Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G34110 Arabidopsis thaliana HOM05D004393 ORTHO05D004897 1.1e-65 253.1 124 100.0
AL1G48910 Arabidopsis lyrata HOM05D004393 ORTHO05D004897 3.7e-24 115.2 79 77.2
AT1G34355 Arabidopsis thaliana HOM05D004393 ORTHO05D004897 1.4e-23 113.2 79 77.2
Carub.0001s3249 Capsella rubella HOM05D004393 ORTHO05D004897 5.3e-23 111.3 79 75.9
Thhalv10006568m.g Eutrema salsugineum HOM05D004393 ORTHO05D004897 8.8e-18 94.0 79 68.4
Sp1g29580 Schrenkiella parvula HOM05D004393 ORTHO05D004897 9.8e-17 90.5 79 65.8
BcaB07g33130 Brassica carinata HOM05D004393 ORTHO05D004897 2.0e-14 82.8 71 64.8
Aa31LG6G8430 Aethionema arabicum HOM05D004393 ORTHO05D004897 3.2e-12 75.5 63 69.8
BcaC07g37547 Brassica carinata HOM05D004393 ORTHO05D004897 4.2e-12 75.1 68 61.8
BcaB04g17879 Brassica carinata HOM05D004393 ORTHO05D004897 5.5e-12 74.7 63 63.5
A08p08270 Brassica napus HOM05D004393 ORTHO05D004897 4.7e-11 71.6 68 58.8
BraA08t32845Z Brassica rapa HOM05D004393 ORTHO05D004897 4.7e-11 71.6 68 58.8
THA.LOC104813097 Tarenaya hassleriana HOM05D004393 ORTHO05D004897 1.4e-10 70.1 77 53.2
AT4G13870 Arabidopsis thaliana HOM05D006987 ORTHO05D000525 1.2e-09 67.0 39 79.5
BcaC08g43782 Brassica carinata HOM05D004393 ORTHO05D004897 1.2e-09 67.0 71 59.2
BolC6t36294H Brassica oleracea HOM05D004393 ORTHO05D004897 1.2e-09 67.0 71 59.2
AL7G42630 Arabidopsis lyrata HOM05D006987 ORTHO05D000525 3.4e-09 65.5 39 76.9
BcaB02g08645 Brassica carinata HOM05D006987 ORTHO05D000525 5.7e-09 64.7 36 83.3
Sp7g11720 Schrenkiella parvula HOM05D006987 ORTHO05D000525 7.5e-09 64.3 72 47.2
C06p11600 Brassica napus HOM05D004393 ORTHO05D004897 9.8e-09 63.9 71 56.3
Carub.0007s2858 Capsella rubella HOM05D006987 ORTHO05D000525 9.8e-09 63.9 36 83.3
Thhalv10025908m.g Eutrema salsugineum HOM05D006987 ORTHO05D000525 9.8e-09 63.9 36 80.6
BcaC02g09380 Brassica carinata HOM05D006987 ORTHO05D000525 1.3e-08 63.5 36 80.6
C04p41950 Brassica napus HOM05D006987 ORTHO05D000525 1.3e-08 63.5 36 80.6
BolC4t25783H Brassica oleracea HOM05D006987 ORTHO05D000525 1.3e-08 63.5 36 80.6
BraA04t16513Z Brassica rapa HOM05D006987 ORTHO05D000525 1.3e-08 63.5 36 80.6
CARHR219770 Cardamine hirsuta HOM05D006987 ORTHO05D000525 1.3e-08 63.5 36 80.6
Aa31LG9G3650 Aethionema arabicum HOM05D006987 ORTHO05D000525 2.8e-08 62.4 123 35.8
A04p08240 Brassica napus HOM05D006987 ORTHO05D000525 3.7e-08 62.0 36 77.8
A10p12670 Brassica napus HOM05D004393 ORTHO05D004897 4.9e-08 61.6 79 54.4
C09p46070 Brassica napus HOM05D004393 ORTHO05D004897 4.9e-08 61.6 79 54.4
BolC9t57476H Brassica oleracea HOM05D004393 ORTHO05D004897 4.9e-08 61.6 79 54.4
BcaC04g20233 Brassica carinata HOM05D004393 ORTHO05D004897 1.8e-07 59.7 71 54.9
BraA10t43355Z Brassica rapa HOM05D004393 ORTHO05D004897 1.8e-07 59.7 79 53.2
BraA09t38751Z Brassica rapa HOM05D004393 ORTHO05D004897 9.2e-07 57.4 69 52.2
THA.LOC104804799 Tarenaya hassleriana HOM05D006987 ORTHO05D000525 1.2e-06 57.0 36 69.4
Manes.18G099700 Manihot esculenta HOM05D004393 ORTHO05D004897 7.7e-06 54.3 82 45.1
Hund19009 Selenicereus undatus HOM05D006987 ORTHO05D000525 7.7e-06 54.3 45 53.3


User provided reference genes

Program Settings