Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G34090 Arabidopsis thaliana HOM05D005057 ORTHO05D006570 2.7e-258 894.8 446 100.0
AL4G30000 Arabidopsis lyrata HOM05D005057 ORTHO05D006570 3.4e-245 851.3 446 96.4
Sp4g16440 Schrenkiella parvula HOM05D005057 ORTHO05D006570 4.4e-237 824.3 452 92.7
Carub.0004s1572 Capsella rubella HOM05D005057 ORTHO05D006570 2.5e-232 808.5 451 92.2
Thhalv10016658m.g Eutrema salsugineum HOM05D005057 ORTHO05D006570 6.9e-230 800.4 447 91.3
A05p11560 Brassica napus HOM05D005057 ORTHO05D006570 1.7e-228 795.8 450 91.1
C04p15030 Brassica napus HOM05D005057 ORTHO05D006570 1.1e-224 783.1 473 86.5
BraA05t20104Z Brassica rapa HOM05D005057 ORTHO05D006570 1.9e-224 782.3 479 85.6
BolC4t23078H Brassica oleracea HOM05D005057 ORTHO05D006570 4.8e-223 777.7 478 86.2
BcaB02g10615 Brassica carinata HOM05D005057 ORTHO05D006570 1.1e-219 766.5 411 93.4
Aa31LG9G13900 Aethionema arabicum HOM05D005057 ORTHO05D006570 5.1e-217 757.7 451 85.8
CARHR128190 Cardamine hirsuta HOM05D005057 ORTHO05D006570 4.2e-211 738.0 386 95.3
THA.LOC104814250 Tarenaya hassleriana HOM05D005057 ORTHO05D006570 2.1e-202 709.1 474 77.8
MELO3C002642.2 Cucumis melo HOM05D005057 ORTHO05D006570 3.8e-180 635.2 432 75.2
CsaV3_1G033430 Cucumis sativus L. HOM05D005057 ORTHO05D006570 5.0e-180 634.8 432 74.8
Thecc.06G172400 Theobroma cacao HOM05D005057 ORTHO05D006570 1.1e-179 633.6 449 73.3
Actinidia16804 Actinidia chinensis HOM05D005057 ORTHO05D006570 3.2e-179 632.1 428 75.2
MD10G1281300 Malus domestica HOM05D005057 ORTHO05D006570 7.2e-179 630.9 432 73.1
Gorai.010G158900 Gossypium raimondii HOM05D005057 ORTHO05D006570 2.7e-178 629.0 434 75.1
ClCG03G007800 Citrullus lanatus HOM05D005057 ORTHO05D006570 2.3e-177 625.9 432 74.8
PSO063G4235 Papaver somniferum HOM05D005057 ORTHO05D006570 2.3e-177 625.9 393 79.1
CiPaw.09G069000 Carya illinoinensis HOM05D005057 ORTHO05D006570 4.0e-177 625.2 435 72.6
Gohir.A06G130800 Gossypium hirsutum HOM05D005057 ORTHO05D006570 4.0e-177 625.2 434 74.7
Ciclev10014965m.g Citrus clementina HOM05D005057 ORTHO05D006570 5.2e-177 624.8 438 72.4
Migut.H01447 Erythranthe guttata HOM05D005057 ORTHO05D006570 5.2e-177 624.8 436 73.2
Manes.16G037800 Manihot esculenta HOM05D005057 ORTHO05D006570 5.2e-177 624.8 401 79.1
PGR004G2757 Punica granatum HOM05D005057 ORTHO05D006570 1.5e-176 623.2 432 73.4
Sabra11G0046800 Salix brachista HOM05D005057 ORTHO05D006570 9.7e-176 620.5 429 74.4
Potri.011G065000 Populus trichocarpa HOM05D005057 ORTHO05D006570 1.7e-175 619.8 459 71.2
Eucgr.D00512 Eucalyptus grandis HOM05D005057 ORTHO05D006570 4.8e-175 618.2 434 73.3
Aqoxy4G00443 Aquilegia oxysepala HOM05D005057 ORTHO05D006570 6.3e-175 617.8 396 78.3
Prupe.4G059900 Prunus persica HOM05D005057 ORTHO05D006570 6.3e-175 617.8 431 72.2
FAN07G2484 Fragaria x ananassa HOM05D005057 ORTHO05D006570 2.4e-174 615.9 428 73.1
Hma1.2p1_0155F.1_g068170 Hydrangea macrophylla HOM05D005057 ORTHO05D006570 3.1e-174 615.5 392 79.1
CANSAT35G0522 Cannabis sativa HOM05D005057 ORTHO05D006570 9.1e-174 614.0 422 74.6
FvH4_3g07940 Fragaria vesca HOM05D005057 ORTHO05D006570 9.1e-174 614.0 393 77.4
RcHm_v2.0_Chr5g0010551 Rosa chinensis HOM05D005057 ORTHO05D006570 1.2e-173 613.6 438 71.7
Sopen02g021880 Solanum pennellii HOM05D005057 ORTHO05D006570 1.6e-173 613.2 400 77.0
GSVIVG01021196001 Vitis vinifera HOM05D005057 ORTHO05D006570 1.3e-172 610.1 393 77.6
ECA236G3111 Erigeron canadensis HOM05D005057 ORTHO05D006570 1.7e-172 609.8 433 73.9
Glyma.13G230500 Glycine max HOM05D005057 ORTHO05D006570 1.7e-172 609.8 393 77.1
arahy.Tifrunner.gnm1.ann1.E17GNY Arachis hypogaea HOM05D005057 ORTHO05D006570 2.9e-172 609.0 393 76.8
HanXRQChr13g0397391 Helianthus annuus HOM05D005057 ORTHO05D006570 3.8e-172 608.6 399 77.2
arahy.Tifrunner.gnm1.ann1.9TM733 Arachis hypogaea HOM05D005057 ORTHO05D006570 8.5e-172 607.4 393 76.6
Cc02_g14710 Coffea canephora HOM05D005057 ORTHO05D006570 8.5e-172 607.4 453 70.2
TWI38G0714 Tripterygium wilfordii HOM05D005057 ORTHO05D006570 1.1e-171 607.1 447 71.4
Atru.chr10.1683 Acer truncatum HOM05D005057 ORTHO05D006570 2.5e-171 605.9 434 72.1
Rhsim13G0191300 Rhododendron simsii HOM05D005057 ORTHO05D006570 1.2e-170 603.6 386 77.2
CAN.G370.63 Capsicum annuum HOM05D005057 ORTHO05D006570 1.6e-170 603.2 386 78.0
Medtr2g015860 Medicago truncatula HOM05D005057 ORTHO05D006570 2.1e-170 602.8 394 76.4
Lalb_Chr15g0089481 Lupinus albus HOM05D005057 ORTHO05D006570 1.0e-169 600.5 394 76.1
Lj6g0017686 Lotus japonicus HOM05D005057 ORTHO05D006570 5.2e-169 598.2 423 72.3
Sc12g0008060 Simmondsia chinensis HOM05D005057 ORTHO05D006570 1.2e-168 597.0 393 75.8
SalBow7G0088 Salvia bowleyana HOM05D005057 ORTHO05D006570 5.7e-168 594.7 404 75.0
DCAR_004016 Daucus carota HOM05D005057 ORTHO05D006570 1.7e-164 583.2 432 71.1
FvH4_4g20380 Fragaria vesca HOM05D005057 ORTHO05D006570 1.1e-163 580.5 372 77.2
EL10Ac8g20510 Beta vulgaris HOM05D005057 ORTHO05D006570 1.9e-163 579.7 428 69.4
Oeu041787.3 Olea europaea HOM05D005057 ORTHO05D006570 7.2e-163 577.8 381 76.6
Ah.09g233650 Amaranthus hybridus HOM05D005057 ORTHO05D006570 2.8e-162 575.9 400 73.0
Ca_00428_v3 Cicer arietinum L. HOM05D005057 ORTHO05D006570 6.1e-162 574.7 377 76.9
SGA_v2.0_scaffold307G48045 Striga asiatica HOM05D005057 ORTHO05D006570 3.0e-161 572.4 477 63.7
ATR0602G189 Amborella trichopoda HOM05D005057 ORTHO05D006570 6.8e-161 571.2 428 70.8
VMungo0540G0206 Vigna mungo HOM05D005057 ORTHO05D006570 4.4e-160 568.5 394 73.1
CDE10G0488 Ceratophyllum demersum HOM05D005057 ORTHO05D006570 1.1e-158 563.9 399 74.4
AUR62031175 Chenopodium quinoa HOM05D005057 ORTHO05D006570 1.0e-156 557.4 361 77.6
Gohir.D06G136700 Gossypium hirsutum HOM05D005057 ORTHO05D006570 2.9e-156 555.8 434 68.2
Lj2A297G103 Lonicera japonica HOM05D005057 ORTHO05D006570 2.9e-156 555.8 380 74.7
vmacro03932 Vaccinium macrocarpon HOM05D005057 ORTHO05D006570 3.1e-153 545.8 530 57.5
Haze_06250 Corylus avellana HOM05D005057 ORTHO05D006570 1.7e-151 540.0 426 68.1
Phvul.006G176700 Phaseolus vulgaris HOM05D005057 ORTHO05D006570 4.1e-150 535.4 394 70.3
MSTRG.13217 Avicennia marina HOM05D005057 ORTHO05D006570 1.6e-149 533.5 400 69.0
MBI06_g25988_MAGBIO Magnolia biondii HOM05D005057 ORTHO05D006570 2.5e-147 526.2 403 68.5
Aqoxy12s001 Aquilegia oxysepala HOM05D005057 ORTHO05D006570 9.5e-147 524.2 345 78.6
AagrBONN_evm.TU.Sc2ySwM_344.2851 Anthoceros agrestis HOM05D005057 ORTHO05D006570 1.2e-146 523.9 401 65.6
FAN11G1223 Fragaria x ananassa HOM05D005057 ORTHO05D006570 6.8e-145 518.1 444 63.5
Mapoly0152s0011 Marchantia polymorpha HOM05D005057 ORTHO05D006570 7.5e-144 514.6 402 66.4
Lsat_1_v5_gn_7_23040 Lactuca sativa HOM05D005057 ORTHO05D006570 6.0e-141 505.0 415 67.2
SMO142G0032 Selaginella moellendorffii HOM05D005057 ORTHO05D006570 1.7e-140 503.4 385 65.5
COL.COLO4_31315 Corchorus olitorius HOM05D005057 ORTHO05D006570 2.3e-140 503.1 385 68.8
Pp3c16_13000 Physcomitrium patens HOM05D005057 ORTHO05D006570 7.3e-139 498.0 401 64.3
Sed0014368 Sechium edule HOM05D005057 ORTHO05D006570 6.2e-138 495.0 439 61.7
AUR62036592 Chenopodium quinoa HOM05D005057 ORTHO05D006570 4.0e-137 492.3 391 66.8
Hund21184 Selenicereus undatus HOM05D005057 ORTHO05D006570 2.2e-135 486.5 407 65.6
Dinv04618 Davidia involucrata HOM05D005057 ORTHO05D006570 6.4e-135 485.0 416 63.5
FAN25G1331 Fragaria x ananassa HOM05D005057 ORTHO05D006570 4.1e-134 482.3 437 62.5
Zm00001eb162010 Zea mays HOM05D005057 ORTHO05D006570 1.2e-133 480.7 293 82.3
Duzib160G0357 Durio zibethinus HOM05D005057 ORTHO05D006570 3.5e-133 479.2 428 60.3
FAN16G2413 Fragaria x ananassa HOM05D005057 ORTHO05D006570 5.2e-129 465.3 404 63.6
Hma1.2p1_0155F.1_g068180 Hydrangea macrophylla HOM05D005057 ORTHO05D006570 5.2e-129 465.3 357 69.2
Cpa.g.sc7.56 Carica papaya HOM05D005057 ORTHO05D006570 8.1e-122 441.4 385 63.1
PSO782G3653 Papaver somniferum HOM05D005057 ORTHO05D006570 1.2e-120 437.6 359 67.1
PRCOL_00006187 Prasinoderma coloniale HOM05D005057 ORTHO05D006570 4.3e-115 419.1 400 55.0
MCO11G641 Micromonas commoda HOM05D005057 ORTHO05D006570 5.4e-110 402.1 394 54.3
Psat1g199000 Pisum sativum HOM05D005057 ORTHO05D006570 1.8e-108 397.1 296 70.6
Cre01.g033700 Chlamydomonas reinhardtii HOM05D005057 ORTHO05D006570 2.8e-106 389.8 457 49.2
Nn1g09052 Nelumbo nucifera HOM05D005057 ORTHO05D006570 3.2e-102 376.3 257 75.1
TPR.G11697 Trifolium pratense HOM05D005057 ORTHO05D006570 6.0e-101 372.1 257 74.3
Solyc02g076950.2 Solanum lycopersicum HOM05D005057 ORTHO05D006570 7.7e-88 328.6 196 83.2
Nitab4.5_0000681g0230 Nicotiana tabacum HOM05D005057 ORTHO05D006570 2.6e-80 303.5 238 70.2
Nitab4.5_0003322g0070 Nicotiana tabacum HOM05D005057 ORTHO05D006570 4.5e-80 302.8 220 72.3
Peaxi162Scf00261g01011 Petunia axillaris HOM05D005057 ORTHO05D006570 1.6e-77 294.3 204 71.1
BcaC04g22954 Brassica carinata HOM05D005057 ORTHO05D006570 1.8e-76 290.8 248 68.5
C09p55570 Brassica napus HOM05D005057 ORTHO05D006570 1.8e-76 290.8 248 68.5
BolC9t54241H Brassica oleracea HOM05D005057 ORTHO05D006570 1.8e-76 290.8 248 68.5
Lalb_Chr18g0059151 Lupinus albus HOM05D005057 ORTHO05D006570 4.8e-74 282.7 245 65.7
BcaC01g06160 Brassica carinata HOM05D005057 ORTHO05D006570 3.8e-71 273.1 251 66.1
QL05p046449 Quercus lobata HOM05D005057 ORTHO05D006570 7.2e-70 268.9 530 36.4
Nitab4.5_0003322g0060 Nicotiana tabacum HOM05D005057 ORTHO05D006570 1.6e-69 267.7 184 71.2
TAR626G1061 Trochodendron aralioides HOM05D005057 ORTHO05D006570 1.8e-68 264.2 172 78.5
Nitab4.5_0000681g0220 Nicotiana tabacum HOM05D005057 ORTHO05D006570 3.0e-68 263.5 184 69.6
Lalb_Chr18g0059161 Lupinus albus HOM05D005057 ORTHO05D006570 8.2e-66 255.4 185 69.2
MD05G1302500 Malus domestica HOM05D005057 ORTHO05D006570 9.1e-65 251.9 341 45.5
unitig_22.g6755 Utricularia gibba HOM05D005057 ORTHO05D006570 9.1e-65 251.9 155 81.9
Os01g0613900 Oryza sativa ssp. japonica HOM05D005057 ORTHO05D006570 1.5e-62 244.6 144 81.2
QL05p046461 Quercus lobata HOM05D005057 ORTHO05D006570 3.2e-62 243.4 153 77.8
Nn1g09100 Nelumbo nucifera HOM05D005057 ORTHO05D006570 5.5e-62 242.7 139 85.6
TPR.G30010 Trifolium pratense HOM05D005057 ORTHO05D006570 5.4e-57 226.1 174 66.1
Ca_30957_v3 Cicer arietinum L. HOM05D005057 ORTHO05D006570 3.8e-55 219.9 136 77.9
HPP92_020184 Vanilla planifolia HOM05D005057 ORTHO05D006570 4.5e-48 196.4 162 61.7
HPP92_020166 Vanilla planifolia HOM05D005057 ORTHO05D006570 8.9e-44 182.2 159 61.6
Psat1g199040 Pisum sativum HOM05D005057 ORTHO05D006570 9.8e-43 178.7 130 66.9
TAR626G0988 Trochodendron aralioides HOM05D005057 ORTHO05D006570 2.9e-42 177.2 145 68.3
unitig_22.g6756 Utricularia gibba HOM05D005057 ORTHO05D006570 3.1e-36 157.1 135 63.7
BolC7t41970H Brassica oleracea HOM05D005057 ORTHO05D006570 8.9e-36 155.6 98 82.7
BolC4t26729H Brassica oleracea HOM05D005057 ORTHO05D006570 1.2e-35 155.2 98 82.7
CSS0031450 Camellia sinensis var. sinensis HOM05D005057 ORTHO05D006570 1.4e-33 148.3 119 63.9
SEGI_02925 Sequoiadendron giganteum HOM05D005057 ORTHO05D006570 3.2e-33 147.1 92 77.2
unitig_22.g6754 Utricularia gibba HOM05D005057 ORTHO05D006570 8.6e-31 139.0 144 50.0
COL.COLO4_25087 Corchorus olitorius HOM05D005057 ORTHO05D006570 4.0e-28 130.2 74 78.4
Glyma.14G170500 Glycine max HOM05D005057 ORTHO05D006570 1.9e-25 121.3 138 51.4
RcHm_v2.0_Chr5g0010591 Rosa chinensis HOM05D005057 ORTHO05D006570 6.0e-24 116.3 73 76.7
MD16G1033100 Malus domestica HOM05D005057 ORTHO05D006570 6.8e-20 102.8 62 75.8
HPP92_020183 Vanilla planifolia HOM05D005057 ORTHO05D006570 1.5e-19 101.7 86 57.0
BcaC01g03610 Brassica carinata HOM05D005057 ORTHO05D019871 1.4e-17 95.1 73 65.8
CARHR128200 Cardamine hirsuta HOM05D005057 ORTHO05D006570 1.4e-17 95.1 66 80.3
arahy.Tifrunner.gnm1.ann1.XF9LE9 Arachis hypogaea HOM05D005057 ORTHO05D011377 2.7e-16 90.9 161 37.3
PSO063G0949 Papaver somniferum HOM05D005057 ORTHO05D006570 3.0e-15 87.4 182 39.0
BolC8t49834H Brassica oleracea HOM05D005057 ORTHO05D019871 6.2e-13 79.7 132 40.2
Medtr2g015780 Medicago truncatula HOM05D005057 ORTHO05D006570 6.8e-12 76.3 57 64.9
RcHm_v2.0_Chr5g0010491 Rosa chinensis HOM05D005057 ORTHO05D006570 1.5e-06 58.5 85 41.2


User provided reference genes

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