Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G34050 Arabidopsis thaliana HOM05D004920 ORTHO05D005998 1.0e-137 493.4 249 100.0
Carub.0004s1568 Capsella rubella HOM05D004920 ORTHO05D005998 4.5e-130 468.0 249 96.0
Sp4g16400 Schrenkiella parvula HOM05D004920 ORTHO05D005998 3.0e-126 455.3 249 92.0
AL4G29930 Arabidopsis lyrata HOM05D004920 ORTHO05D005998 1.8e-123 446.0 252 92.5
Thhalv10017133m.g Eutrema salsugineum HOM05D004920 ORTHO05D005998 1.8e-123 446.0 252 90.5
BcaC02g07783 Brassica carinata HOM05D004920 ORTHO05D005998 1.2e-122 443.4 249 90.8
BolC4t27823H Brassica oleracea HOM05D004920 ORTHO05D005998 1.1e-120 436.8 249 89.2
BcaB02g10610 Brassica carinata HOM05D004920 ORTHO05D005998 1.6e-119 433.0 247 88.7
CARHR128130 Cardamine hirsuta HOM05D004920 ORTHO05D005998 1.4e-118 429.9 257 86.4
A05p11610 Brassica napus HOM05D004920 ORTHO05D005998 1.2e-117 426.8 249 86.7
BraA05t20108Z Brassica rapa HOM05D004920 ORTHO05D005998 1.2e-117 426.8 249 86.7
C04p15060 Brassica napus HOM05D004920 ORTHO05D005998 7.5e-117 424.1 254 86.2
BolC4t23082H Brassica oleracea HOM05D004920 ORTHO05D005998 3.7e-116 421.8 254 85.8
A04p26140 Brassica napus HOM05D004920 ORTHO05D005998 5.4e-115 417.9 249 87.1
BcaB06g28727 Brassica carinata HOM05D004920 ORTHO05D005998 7.0e-115 417.5 250 86.0
C04p63520 Brassica napus HOM05D004920 ORTHO05D005998 2.0e-114 416.0 249 86.7
BraA04t18117Z Brassica rapa HOM05D004920 ORTHO05D005998 2.0e-114 416.0 249 86.7
Aa31LG9G13860 Aethionema arabicum HOM05D004920 ORTHO05D005998 3.8e-113 411.8 248 82.7
THA.LOC104812631 Tarenaya hassleriana HOM05D004920 ORTHO05D005998 1.4e-102 376.7 255 77.3
Cpa.g.sc80.25 Carica papaya HOM05D004920 ORTHO05D005998 1.4e-94 350.1 248 71.0
Thecc.06G177000 Theobroma cacao HOM05D004920 ORTHO05D005998 1.1e-91 340.5 250 69.2
Glyma.12G114600 Glycine max HOM05D004920 ORTHO05D005998 9.2e-91 337.4 211 73.9
Cfa000557 Carpinus fangiana HOM05D004920 ORTHO05D005998 1.6e-90 336.7 247 66.8
Duzib235G1063 Durio zibethinus HOM05D004920 ORTHO05D005998 1.6e-90 336.7 243 67.5
Manes.17G051900 Manihot esculenta HOM05D004920 ORTHO05D005998 2.0e-90 336.3 249 67.5
Haze_06318 Corylus avellana HOM05D004920 ORTHO05D005998 3.5e-90 335.5 247 66.8
Potri.004G052200 Populus trichocarpa HOM05D004920 ORTHO05D005998 4.6e-90 335.1 243 67.5
Gohir.D01G045600 Gossypium hirsutum HOM05D004920 ORTHO05D005998 7.8e-90 334.3 239 69.9
Sabra04G0033000 Salix brachista HOM05D004920 ORTHO05D005998 1.0e-89 334.0 208 72.1
CsaV3_6G050600 Cucumis sativus L. HOM05D004920 ORTHO05D005998 3.9e-89 332.0 249 64.3
Gohir.A05G157100 Gossypium hirsutum HOM05D004920 ORTHO05D005998 5.0e-89 331.6 239 70.3
Gohir.D05G160000 Gossypium hirsutum HOM05D004920 ORTHO05D005998 5.0e-89 331.6 240 70.4
CiPaw.09G066500 Carya illinoinensis HOM05D004920 ORTHO05D005998 6.6e-89 331.3 244 66.4
Lj4g0024893 Lotus japonicus HOM05D004920 ORTHO05D005998 6.6e-89 331.3 211 73.0
Eucgr.D00572 Eucalyptus grandis HOM05D004920 ORTHO05D005998 8.6e-89 330.9 208 71.6
Atru.chr10.1743 Acer truncatum HOM05D004920 ORTHO05D005998 1.1e-88 330.5 239 67.8
Gorai.002G065200 Gossypium raimondii HOM05D004920 ORTHO05D005998 1.1e-88 330.5 247 67.2
Hund21192 Selenicereus undatus HOM05D004920 ORTHO05D005998 1.1e-88 330.5 226 69.5
TWI38G1999 Tripterygium wilfordii HOM05D004920 ORTHO05D005998 1.5e-88 330.1 207 72.9
ClCG01G023480 Citrullus lanatus HOM05D004920 ORTHO05D005998 3.3e-88 328.9 208 71.2
Ca_10660_v3 Cicer arietinum L. HOM05D004920 ORTHO05D005998 4.3e-88 328.6 210 71.4
Dinv40630 Davidia involucrata HOM05D004920 ORTHO05D005998 4.3e-88 328.6 250 65.2
Oeu043091.1 Olea europaea HOM05D004920 ORTHO05D005998 5.6e-88 328.2 256 62.9
TPR.G17014 Trifolium pratense HOM05D004920 ORTHO05D005998 5.6e-88 328.2 210 72.4
Nn2g14559 Nelumbo nucifera HOM05D004920 ORTHO05D005998 7.3e-88 327.8 215 70.7
VMungo1127G0753 Vigna mungo HOM05D004920 ORTHO05D005998 7.3e-88 327.8 211 71.6
Oeu025561.1 Olea europaea HOM05D004920 ORTHO05D005998 9.5e-88 327.4 248 64.5
Peaxi162Scf00367g00049 Petunia axillaris HOM05D004920 ORTHO05D005998 1.2e-87 327.0 249 63.9
Phvul.001G005700 Phaseolus vulgaris HOM05D004920 ORTHO05D005998 1.6e-87 326.6 211 70.6
CANSAT35G1037 Cannabis sativa HOM05D004920 ORTHO05D005998 2.8e-87 325.9 245 66.1
Cc02_g14330 Coffea canephora HOM05D004920 ORTHO05D005998 2.8e-87 325.9 208 71.6
Ah.05g178940 Amaranthus hybridus HOM05D004920 ORTHO05D005998 4.7e-87 325.1 201 73.6
CAN.G1961.2 Capsicum annuum HOM05D004920 ORTHO05D005998 4.7e-87 325.1 248 65.3
AUR62014920 Chenopodium quinoa HOM05D004920 ORTHO05D005998 4.7e-87 325.1 215 71.2
Actinidia07625 Actinidia chinensis HOM05D004920 ORTHO05D005998 6.2e-87 324.7 248 64.5
Medtr4g087955 Medicago truncatula HOM05D004920 ORTHO05D005998 6.2e-87 324.7 210 72.4
TPR.G16259 Trifolium pratense HOM05D004920 ORTHO05D005998 8.1e-87 324.3 247 65.2
RcHm_v2.0_Chr5g0009901 Rosa chinensis HOM05D004920 ORTHO05D005998 1.1e-86 323.9 251 64.5
FvH4_7g02080 Fragaria vesca HOM05D004920 ORTHO05D005998 1.4e-86 323.6 235 66.0
FAN06G4868 Fragaria x ananassa HOM05D004920 ORTHO05D005998 1.4e-86 323.6 235 66.0
AUR62031127 Chenopodium quinoa HOM05D004920 ORTHO05D005998 1.8e-86 323.2 209 72.7
PGR004G0415 Punica granatum HOM05D004920 ORTHO05D005998 1.8e-86 323.2 204 73.0
PGR046G0004 Punica granatum HOM05D004920 ORTHO05D005998 1.8e-86 323.2 204 73.0
FvH4_3g08250 Fragaria vesca HOM05D004920 ORTHO05D005998 4.0e-86 322.0 251 64.1
FAN03G1929 Fragaria x ananassa HOM05D004920 ORTHO05D005998 4.0e-86 322.0 235 65.5
FAN11G1044 Fragaria x ananassa HOM05D004920 ORTHO05D005998 4.0e-86 322.0 251 64.1
FAN16G1146 Fragaria x ananassa HOM05D004920 ORTHO05D005998 4.0e-86 322.0 251 64.1
Peaxi162Scf00016g00346 Petunia axillaris HOM05D004920 ORTHO05D005998 4.0e-86 322.0 254 62.6
PSO063G1259 Papaver somniferum HOM05D004920 ORTHO05D005998 5.2e-86 321.6 247 64.4
Solyc02g031770.4 Solanum lycopersicum HOM05D004920 ORTHO05D005998 1.2e-85 320.5 248 62.9
Sed0019770 Sechium edule HOM05D004920 ORTHO05D005998 1.5e-85 320.1 252 63.9
Ciclev10016425m.g Citrus clementina HOM05D004920 ORTHO05D005998 2.0e-85 319.7 234 65.8
Sopen02g010080 Solanum pennellii HOM05D004920 ORTHO05D005998 2.0e-85 319.7 248 62.5
MSTRG.14155 Avicennia marina HOM05D004920 ORTHO05D005998 3.4e-85 318.9 253 61.7
BcaB06g28732 Brassica carinata HOM05D004920 ORTHO05D005998 4.4e-85 318.5 221 77.4
TAR624G0520 Trochodendron aralioides HOM05D004920 ORTHO05D005998 4.4e-85 318.5 255 62.4
Sc17g0005830 Simmondsia chinensis HOM05D004920 ORTHO05D005998 5.8e-85 318.2 233 67.0
PSO675G0526 Papaver somniferum HOM05D004920 ORTHO05D005998 2.2e-84 316.2 248 62.5
PSO541G3866 Papaver somniferum HOM05D004920 ORTHO05D005998 2.9e-84 315.8 248 62.5
SGA_v2.0_scaffold16G07660 Striga asiatica HOM05D004920 ORTHO05D005998 2.9e-84 315.8 246 64.2
Migut.M01075 Erythranthe guttata HOM05D004920 ORTHO05D005998 4.9e-84 315.1 248 63.7
MD10G1285300 Malus domestica HOM05D004920 ORTHO05D005998 8.3e-84 314.3 205 69.3
DCAR_007975 Daucus carota HOM05D004920 ORTHO05D005998 1.1e-83 313.9 202 70.8
Lalb_Chr07g0189681 Lupinus albus HOM05D004920 ORTHO05D005998 1.1e-83 313.9 252 62.7
MBI07_g06434_MAGBIO Magnolia biondii HOM05D004920 ORTHO05D005998 1.9e-83 313.2 200 70.5
MD05G1306300 Malus domestica HOM05D004920 ORTHO05D005998 4.1e-83 312.0 233 65.7
GSVIVG01021153001 Vitis vinifera HOM05D004920 ORTHO05D005998 4.1e-83 312.0 249 61.8
Aqoxy1G02218 Aquilegia oxysepala HOM05D004920 ORTHO05D005998 5.4e-83 311.6 246 62.2
Rhsim02G0138400 Rhododendron simsii HOM05D004920 ORTHO05D005998 5.4e-83 311.6 248 62.5
Nitab4.5_0000138g0010 Nicotiana tabacum HOM05D004920 ORTHO05D005998 7.1e-83 311.2 244 61.9
Hma1.2p1_0155F.1_g068520 Hydrangea macrophylla HOM05D004920 ORTHO05D005998 2.1e-82 309.7 255 62.0
EL10Ac1g01008 Beta vulgaris HOM05D004920 ORTHO05D005998 2.7e-82 309.3 201 70.1
Dinv36435 Davidia involucrata HOM05D004920 ORTHO05D005998 3.5e-82 308.9 238 63.0
Sed0013972 Sechium edule HOM05D004920 ORTHO05D005998 8.6e-81 304.3 207 67.1
Lsat_1_v5_gn_7_23761 Lactuca sativa HOM05D004920 ORTHO05D005998 1.9e-80 303.1 202 68.3
THA.LOC104814688 Tarenaya hassleriana HOM05D004920 ORTHO05D005998 1.9e-80 303.1 221 72.4
ECA236G4389 Erigeron canadensis HOM05D004920 ORTHO05D005998 2.1e-79 299.7 213 64.8
CDE02G3849 Ceratophyllum demersum HOM05D004920 ORTHO05D005998 2.8e-79 299.3 198 68.2
Rhsim06G0035100 Rhododendron simsii HOM05D004920 ORTHO05D005998 3.6e-79 298.9 262 58.4
HanXRQChr15g0481321 Helianthus annuus HOM05D004920 ORTHO05D005998 4.7e-79 298.5 200 67.5
SGA_v2.0_scaffold341G49353 Striga asiatica HOM05D004920 ORTHO05D005998 4.7e-79 298.5 198 69.2
FAN25G0865 Fragaria x ananassa HOM05D004920 ORTHO05D005998 4.4e-77 292.0 298 52.3
Lj7P478G59 Lonicera japonica HOM05D004920 ORTHO05D005998 4.1e-75 285.4 172 74.4
HPP92_018237 Vanilla planifolia HOM05D004920 ORTHO05D005998 1.1e-72 277.3 233 57.1
Gorai.009G165000 Gossypium raimondii HOM05D004920 ORTHO05D005998 1.9e-72 276.6 240 61.7
Nitab4.5_0008952g0010 Nicotiana tabacum HOM05D004920 ORTHO05D005998 2.5e-72 276.2 316 46.5
ATR0712G057 Amborella trichopoda HOM05D004920 ORTHO05D005998 5.6e-72 275.0 205 62.0
MELO3C007238.2 Cucumis melo HOM05D004920 ORTHO05D005998 6.2e-71 271.6 252 57.9
Glyma.06G291400 Glycine max HOM05D004920 ORTHO05D005998 8.4e-68 261.2 158 77.2
vmacro15953 Vaccinium macrocarpon HOM05D004920 ORTHO05D005998 9.9e-61 237.7 317 44.8
BcaC01g05809 Brassica carinata HOM05D004920 ORTHO05D005998 1.7e-60 236.9 154 77.3
QL04p069154 Quercus lobata HOM05D004920 ORTHO05D005998 1.4e-59 233.8 136 77.9
BolC3t14602H Brassica oleracea HOM05D004920 ORTHO05D005998 1.8e-57 226.9 169 70.4
FAN21G0445 Fragaria x ananassa HOM05D004920 ORTHO05D005998 2.3e-57 226.5 286 46.9
Mapoly0023s0159 Marchantia polymorpha HOM05D004920 ORTHO05D005998 1.5e-56 223.8 206 53.4
Pp3c14_19140 Physcomitrium patens HOM05D004920 ORTHO05D005998 4.3e-56 222.2 191 50.8
AagrBONN_evm.TU.Sc2ySwM_228.2942 Anthoceros agrestis HOM05D004920 ORTHO05D005998 1.2e-53 214.2 206 47.6
DCAR_004027 Daucus carota HOM05D004920 ORTHO05D005998 3.4e-53 212.6 200 54.5
SEGI_15656 Sequoiadendron giganteum HOM05D004920 ORTHO05D005998 8.4e-52 208.0 146 64.4
Glyma.04G173800 Glycine max HOM05D004920 ORTHO05D005998 4.6e-50 202.2 119 78.2
SMO196G0025 Selaginella moellendorffii HOM05D004920 ORTHO05D005998 2.6e-45 186.4 190 43.2
COL.COLO4_31383 Corchorus olitorius HOM05D004920 ORTHO05D005998 4.6e-42 175.6 106 76.4
Ca_26043_v3 Cicer arietinum L. HOM05D004920 ORTHO05D005998 6.7e-41 171.8 99 80.8
Cpa.g.sc80.22 Carica papaya HOM05D004920 ORTHO05D005998 1.9e-40 170.2 99 81.8
SHI18442 Sapria himalayana HOM05D004920 ORTHO05D005998 3.7e-39 166.0 244 39.3
CAN.G160.23 Capsicum annuum HOM05D004920 ORTHO05D005998 4.1e-38 162.5 146 58.9
BcaB01g03906 Brassica carinata HOM05D004920 ORTHO05D005998 2.2e-36 156.8 186 51.1
TAR626G0293 Trochodendron aralioides HOM05D004920 ORTHO05D005998 2.9e-36 156.4 99 70.7
unitig_60.g25415 Utricularia gibba HOM05D004920 ORTHO05D005998 1.1e-35 154.5 97 74.2
Cpa.g.sc12.156 Carica papaya HOM05D004920 ORTHO05D005998 6.1e-34 148.7 87 82.8
Prupe.4G056300 Prunus persica HOM05D004920 ORTHO05D005998 1.4e-33 147.5 150 52.7
BcaC04g19340 Brassica carinata HOM05D001872 ORTHO05D005998 9.1e-30 134.8 69 95.7
BolC1t01767H Brassica oleracea HOM05D001872 ORTHO05D005998 9.1e-30 134.8 92 77.2
BcaC05g29287 Brassica carinata HOM05D001911 ORTHO05D001951 1.2e-29 134.4 89 78.7
BcaNung00861 Brassica carinata HOM05D001872 ORTHO05D001859 2.6e-29 133.3 72 91.7
BolC7t45617H Brassica oleracea HOM05D001872 ORTHO05D001859 2.6e-29 133.3 72 91.7
C01p18450 Brassica napus HOM05D001872 ORTHO05D001859 4.5e-29 132.5 88 78.4
Os02g0312700 Oryza sativa ssp. japonica HOM05D004920 ORTHO05D005998 5.0e-28 129.0 84 66.7
Zm00001eb237640 Zea mays HOM05D004920 ORTHO05D005998 6.5e-28 128.6 145 48.3
CBR_g54210 Chara braunii HOM05D004920 ORTHO05D005998 3.9e-25 119.4 101 53.5
Cre10.g437050 Chlamydomonas reinhardtii HOM05D004920 ORTHO05D005998 2.2e-23 113.6 203 32.0
Psat4g001400 Pisum sativum HOM05D004920 ORTHO05D005998 3.7e-23 112.8 118 51.7
Medtr1g097870 Medicago truncatula HOM05D004920 ORTHO05D005998 1.4e-19 100.9 102 52.0
A02p38170 Brassica napus HOM05D011482 ORTHO05D001953 5.7e-16 89.0 44 97.7
BraA02t08794Z Brassica rapa HOM05D001897 ORTHO05D001953 5.7e-16 89.0 44 97.7
PRCOL_00005737 Prasinoderma coloniale HOM05D004920 ORTHO05D005998 2.8e-15 86.7 176 27.8
BcaC01g03531 Brassica carinata HOM05D004920 ORTHO05D094784 6.3e-15 85.5 82 54.9
QL04p069158 Quercus lobata HOM05D004920 ORTHO05D005998 1.6e-13 80.9 83 49.4
Cpa.g.sc80.20 Carica papaya HOM05D009365 ORTHO05D000952 3.5e-13 79.7 48 77.1
MCO09G652 Micromonas commoda HOM05D004920 ORTHO05D005998 5.9e-13 79.0 117 29.1
BcaC01g04260 Brassica carinata HOM05D004920 ORTHO05D010632 5.0e-12 75.9 55 70.9
BolC5t34235H Brassica oleracea HOM05D001872 ORTHO05D001859 1.9e-11 73.9 56 69.6
C03p43360 Brassica napus HOM05D004920 ORTHO05D010632 9.4e-11 71.6 35 97.1
BolC3t16607H Brassica oleracea HOM05D008686 ORTHO05D010632 9.4e-11 71.6 35 97.1
Duzib192G0917 Durio zibethinus HOM05D004920 ORTHO05D005998 3.6e-10 69.7 95 45.3
C03p13910 Brassica napus HOM05D004920 ORTHO05D005998 4.7e-10 69.3 35 94.3
Oeu062327.1 Olea europaea HOM05D004920 ORTHO05D005998 3.0e-09 66.6 42 71.4
SEGI_14350 Sequoiadendron giganteum HOM05D004920 ORTHO05D005998 5.7e-08 62.4 54 50.0
Oeu019523.1 Olea europaea HOM05D004920 ORTHO05D005998 6.3e-07 58.9 45 60.0
BcaC03g15720 Brassica carinata HOM05D000589 ORTHO05D039119 2.4e-06 57.0 34 76.5
DCAR_032321 Daucus carota HOM05D004920 ORTHO05D005998 5.3e-06 55.8 103 36.9


User provided reference genes

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