Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G33510 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 1.7e-81 306.2 190 100.0
AL4G29180 Arabidopsis lyrata HOM05D003968 ORTHO05D004077 1.2e-77 293.5 190 96.3
Thhalv10017284m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 1.4e-70 270.0 189 92.6
CARHR127520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 8.4e-68 260.8 188 88.8
Carub.0004s1514 Capsella rubella HOM05D003968 ORTHO05D004077 1.0e-65 253.8 197 87.3
BcaB02g10569 Brassica carinata HOM05D003968 ORTHO05D004077 1.7e-65 253.1 199 87.4
A05p12030 Brassica napus HOM05D003968 ORTHO05D004077 6.6e-65 251.1 197 87.8
BcaC02g07799 Brassica carinata HOM05D003968 ORTHO05D004077 1.6e-63 246.5 202 81.2
C04p63030 Brassica napus HOM05D003968 ORTHO05D004077 1.6e-63 246.5 202 82.7
BcaC02g11436 Brassica carinata HOM05D003968 ORTHO05D004077 2.8e-63 245.7 204 83.8
C04p15610 Brassica napus HOM05D003968 ORTHO05D004077 2.8e-63 245.7 204 83.8
A04p25820 Brassica napus HOM05D003968 ORTHO05D004077 6.2e-63 244.6 197 84.8
Sp4g15850 Schrenkiella parvula HOM05D003968 ORTHO05D004077 3.1e-62 242.3 195 83.1
BraA05t20145Z Brassica rapa HOM05D003968 ORTHO05D004077 3.4e-61 238.8 210 80.0
BolC4t27780H Brassica oleracea HOM05D003968 ORTHO05D004077 9.9e-61 237.3 215 77.7
BcaC01g05837 Brassica carinata HOM05D003968 ORTHO05D004077 2.2e-60 236.1 195 81.0
BcaB06g28694 Brassica carinata HOM05D003968 ORTHO05D004077 4.9e-60 235.0 208 73.6
A03p18770 Brassica napus HOM05D003968 ORTHO05D004077 2.4e-59 232.6 189 82.5
BraA03t11137Z Brassica rapa HOM05D003968 ORTHO05D004077 3.2e-59 232.3 189 82.0
BolC4t23129H Brassica oleracea HOM05D003968 ORTHO05D004077 5.4e-59 231.5 217 77.9
C03p21930 Brassica napus HOM05D003968 ORTHO05D004077 2.1e-58 229.6 189 81.5
BraA04t18084Z Brassica rapa HOM05D003968 ORTHO05D004077 7.8e-58 227.6 210 77.6
BcaB01g03931 Brassica carinata HOM05D003968 ORTHO05D004077 1.6e-55 219.9 184 80.4
Aa31LG9G13440 Aethionema arabicum HOM05D003968 ORTHO05D004077 2.2e-52 209.5 177 78.5
THA.LOC104814203 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 7.3e-48 194.5 195 64.1
THA.LOC104820530 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 4.8e-47 191.8 190 60.5
Carub.0001s2650 Capsella rubella HOM05D003968 ORTHO05D004077 1.4e-46 190.3 186 74.2
THA.LOC104812600 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 1.4e-46 190.3 199 63.8
Aa31sc415G10 Aethionema arabicum HOM05D003968 ORTHO05D004077 1.2e-45 187.2 192 68.8
Sp1g24250 Schrenkiella parvula HOM05D003968 ORTHO05D004077 4.5e-45 185.3 192 70.8
CARHR027520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 4.2e-43 178.7 184 66.3
AT1G28070 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 5.5e-43 178.3 187 71.1
Cfa009411 Carpinus fangiana HOM05D003968 ORTHO05D004077 1.8e-41 173.3 192 56.2
Manes.08G103100 Manihot esculenta HOM05D003968 ORTHO05D004077 1.8e-41 173.3 204 56.9
BraA08t34544Z Brassica rapa HOM05D003968 ORTHO05D004077 6.7e-41 171.4 187 60.4
Haze_12469 Corylus avellana HOM05D003968 ORTHO05D004077 1.5e-40 170.2 192 53.1
Thhalv10008849m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 3.3e-40 169.1 204 61.8
Manes.09G185900 Manihot esculenta HOM05D003968 ORTHO05D004077 4.3e-40 168.7 219 53.9
Ciclev10032280m.g Citrus clementina HOM05D003968 ORTHO05D004077 5.6e-40 168.3 197 69.0
BcaB03g13960 Brassica carinata HOM05D003968 ORTHO05D004077 7.4e-40 167.9 185 52.4
Eucgr.H03380 Eucalyptus grandis HOM05D003968 ORTHO05D004077 7.4e-40 167.9 202 54.5
Duzib251G0690 Durio zibethinus HOM05D003968 ORTHO05D004077 6.2e-39 164.9 204 61.8
Nitab4.5_0007554g0020 Nicotiana tabacum HOM05D003968 ORTHO05D004077 6.2e-39 164.9 196 52.0
QL03p050330 Quercus lobata HOM05D003968 ORTHO05D004077 1.8e-38 163.3 196 45.4
Duzib052G1223 Durio zibethinus HOM05D003968 ORTHO05D004077 2.4e-38 162.9 213 61.5
Duzib248G0844 Durio zibethinus HOM05D003968 ORTHO05D004077 2.4e-38 162.9 196 56.6
PGR057G0001 Punica granatum HOM05D003968 ORTHO05D004077 5.3e-38 161.8 197 60.9
PGR119G2322 Punica granatum HOM05D003968 ORTHO05D004077 5.3e-38 161.8 197 60.9
Glyma.18G302000 Glycine max HOM05D003968 ORTHO05D004077 6.9e-38 161.4 203 59.1
A07p11490 Brassica napus HOM05D003968 ORTHO05D004077 1.2e-37 160.6 185 50.8
BraA07t28938Z Brassica rapa HOM05D003968 ORTHO05D004077 1.2e-37 160.6 185 50.8
Thecc.02G196200 Theobroma cacao HOM05D003968 ORTHO05D004077 1.2e-37 160.6 202 61.9
A08p25930 Brassica napus HOM05D003968 ORTHO05D004077 2.0e-37 159.8 187 57.8
CiPaw.06G107600 Carya illinoinensis HOM05D003968 ORTHO05D004077 2.0e-37 159.8 190 55.8
Peaxi162Scf00128g01760 Petunia axillaris HOM05D003968 ORTHO05D004077 7.6e-37 157.9 200 45.0
Phvul.008G000400 Phaseolus vulgaris HOM05D003968 ORTHO05D004077 7.6e-37 157.9 204 47.1
Potri.003G165800 Populus trichocarpa HOM05D003968 ORTHO05D004077 7.6e-37 157.9 195 52.8
VMungo1383G2332 Vigna mungo HOM05D003968 ORTHO05D004077 7.6e-37 157.9 201 46.8
FvH4_4g23070 Fragaria vesca HOM05D003968 ORTHO05D004077 2.9e-36 156.0 216 56.5
BolC3t19720H Brassica oleracea HOM05D003968 ORTHO05D004077 3.8e-36 155.6 187 58.8
CSS0002178 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 3.8e-36 155.6 191 56.5
TWI75G0242 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 3.8e-36 155.6 202 52.5
Lalb_Chr04g0257091 Lupinus albus HOM05D003968 ORTHO05D004077 4.9e-36 155.2 195 65.1
Gohir.D12G145000 Gossypium hirsutum HOM05D003968 ORTHO05D004077 6.5e-36 154.8 197 61.4
MD16G1126900 Malus domestica HOM05D003968 ORTHO05D004077 6.5e-36 154.8 218 60.1
vmacro22632 Vaccinium macrocarpon HOM05D003968 ORTHO05D004077 6.5e-36 154.8 199 63.3
Gorai.008G156400 Gossypium raimondii HOM05D003968 ORTHO05D004077 8.4e-36 154.5 199 60.8
RcHm_v2.0_Chr4g0429341 Rosa chinensis HOM05D003968 ORTHO05D004077 8.4e-36 154.5 215 60.5
TWI18G0914 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 8.4e-36 154.5 204 50.5
Gohir.A12G140400 Gossypium hirsutum HOM05D003968 ORTHO05D004077 1.1e-35 154.1 200 60.0
Lalb_Chr14g0375131 Lupinus albus HOM05D003968 ORTHO05D004077 1.1e-35 154.1 186 66.1
GSVIVG01000957001 Vitis vinifera HOM05D003968 ORTHO05D004077 1.1e-35 154.1 193 57.0
arahy.Tifrunner.gnm1.ann1.25I2B1 Arachis hypogaea HOM05D003968 ORTHO05D004077 1.4e-35 153.7 213 54.5
arahy.Tifrunner.gnm1.ann1.GKU1A2 Arachis hypogaea HOM05D003968 ORTHO05D004077 1.4e-35 153.7 213 54.5
CiPaw.05G103900 Carya illinoinensis HOM05D003968 ORTHO05D004077 1.9e-35 153.3 195 50.3
Dinv17895 Davidia involucrata HOM05D003968 ORTHO05D004077 2.5e-35 152.9 194 62.9
MD13G1126400 Malus domestica HOM05D003968 ORTHO05D004077 3.2e-35 152.5 211 61.6
C03p74720 Brassica napus HOM05D003968 ORTHO05D004077 5.5e-35 151.8 188 58.5
Peaxi162Scf00758g00054 Petunia axillaris HOM05D003968 ORTHO05D004077 5.5e-35 151.8 195 64.1
ClCG07G011730 Citrullus lanatus HOM05D003968 ORTHO05D004077 7.1e-35 151.4 190 63.7
FAN12G2512 Fragaria x ananassa HOM05D003968 ORTHO05D004077 7.1e-35 151.4 215 55.8
BcaC01g00004 Brassica carinata HOM05D003968 ORTHO05D004077 9.3e-35 151.0 187 57.2
Potri.001G062000 Populus trichocarpa HOM05D003968 ORTHO05D004077 9.3e-35 151.0 199 51.3
Oeu003280.1 Olea europaea HOM05D003968 ORTHO05D004077 1.2e-34 150.6 197 43.1
TWI36G1280 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 1.6e-34 150.2 208 42.8
Sabra01G0044600 Salix brachista HOM05D003968 ORTHO05D004077 3.5e-34 149.1 199 50.3
Sabra03G0121000 Salix brachista HOM05D003968 ORTHO05D004077 3.5e-34 149.1 196 50.0
Sed0024018 Sechium edule HOM05D003968 ORTHO05D004077 3.5e-34 149.1 187 64.7
Hma1.2p1_0459F.1_g157230 Hydrangea macrophylla HOM05D003968 ORTHO05D004077 4.6e-34 148.7 202 57.9
HanXRQChr08g0210131 Helianthus annuus HOM05D003968 ORTHO05D004077 7.9e-34 147.9 203 56.2
Prupe.1G219000 Prunus persica HOM05D003968 ORTHO05D004077 7.9e-34 147.9 224 48.2
TAR629G0662 Trochodendron aralioides HOM05D003968 ORTHO05D004077 7.9e-34 147.9 186 54.3
Nitab4.5_0001600g0080 Nicotiana tabacum HOM05D003968 ORTHO05D004077 3.0e-33 146.0 178 47.8
BcaC06g35328 Brassica carinata HOM05D003968 ORTHO05D004077 3.9e-33 145.6 186 48.4
C07p17340 Brassica napus HOM05D003968 ORTHO05D004077 3.9e-33 145.6 186 48.4
BolC7t42238H Brassica oleracea HOM05D003968 ORTHO05D004077 3.9e-33 145.6 186 48.4
COL.COLO4_11740 Corchorus olitorius HOM05D003968 ORTHO05D004077 3.9e-33 145.6 211 47.4
MSTRG.8041 Avicennia marina HOM05D003968 ORTHO05D004077 5.1e-33 145.2 203 49.8
BcaC05g26810 Brassica carinata HOM05D003968 ORTHO05D004077 6.7e-33 144.8 173 50.9
Atru.chr11.2403 Acer truncatum HOM05D003968 ORTHO05D004077 1.5e-32 143.7 208 54.8
CANSAT56G0023 Cannabis sativa HOM05D003968 ORTHO05D004077 1.9e-32 143.3 225 51.1
ECA233G5077 Erigeron canadensis HOM05D003968 ORTHO05D004077 2.5e-32 142.9 194 61.9
Lj1g0012774 Lotus japonicus HOM05D003968 ORTHO05D004077 3.3e-32 142.5 201 47.8
Nn3g16325 Nelumbo nucifera HOM05D003968 ORTHO05D004077 3.3e-32 142.5 189 47.6
Actinidia30604 Actinidia chinensis HOM05D003968 ORTHO05D004077 4.3e-32 142.1 189 49.7
Medtr7g005500 Medicago truncatula HOM05D003968 ORTHO05D004077 4.3e-32 142.1 207 50.7
Sc11g0000210 Simmondsia chinensis HOM05D003968 ORTHO05D004077 5.7e-32 141.7 222 39.2
Actinidia22131 Actinidia chinensis HOM05D003968 ORTHO05D004077 2.1e-31 139.8 188 63.3
FAN17G1317 Fragaria x ananassa HOM05D003968 ORTHO05D004077 2.1e-31 139.8 245 52.7
Cpa.g.sc123.52 Carica papaya HOM05D003968 ORTHO05D004077 2.8e-31 139.4 210 47.6
Lsat_1_v5_gn_8_147160 Lactuca sativa HOM05D003968 ORTHO05D004077 2.8e-31 139.4 238 50.4
Psat0s2399g0040 Pisum sativum HOM05D003968 ORTHO05D004077 3.7e-31 139.0 213 43.2
SalBow2G1659 Salvia bowleyana HOM05D003968 ORTHO05D004077 4.8e-31 138.7 208 48.6
MBI07_g37482_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 8.2e-31 137.9 183 52.5
Nn4g22193 Nelumbo nucifera HOM05D003968 ORTHO05D004077 1.8e-30 136.7 187 45.5
HanXRQChr12g0362341 Helianthus annuus HOM05D003968 ORTHO05D004077 2.4e-30 136.3 183 57.9
Migut.K01036 Erythranthe guttata HOM05D003968 ORTHO05D004077 3.1e-30 136.0 213 46.0
Lj6C835T0 Lonicera japonica HOM05D003968 ORTHO05D004077 3.1e-30 136.0 189 51.9
Aqoxy5G03211 Aquilegia oxysepala HOM05D003968 ORTHO05D004077 4.1e-30 135.6 186 58.1
CSS0048086 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 5.3e-30 135.2 202 58.9
MSTRG.468 Avicennia marina HOM05D003968 ORTHO05D004077 6.9e-30 134.8 208 46.6
unitig_747.g21116 Utricularia gibba HOM05D003968 ORTHO05D004077 9.0e-30 134.4 202 42.1
CAN.G1277.6 Capsicum annuum HOM05D003968 ORTHO05D004077 2.6e-29 132.9 191 46.6
FAN07G1723 Fragaria x ananassa HOM05D003968 ORTHO05D004077 3.4e-29 132.5 235 51.9
Lsat_1_v5_gn_4_1260 Lactuca sativa HOM05D003968 ORTHO05D004077 7.6e-29 131.3 189 62.4
PSO478G1150 Papaver somniferum HOM05D003968 ORTHO05D004077 7.6e-29 131.3 196 61.2
BcaC05g26624 Brassica carinata HOM05D003968 ORTHO05D004077 1.7e-28 130.2 172 61.0
C05p26740 Brassica napus HOM05D003968 ORTHO05D004077 1.7e-28 130.2 172 61.0
ClCG06G001810 Citrullus lanatus HOM05D003968 ORTHO05D004077 1.7e-28 130.2 204 52.9
Sed0012192 Sechium edule HOM05D003968 ORTHO05D004077 1.7e-28 130.2 198 57.6
Solyc01g009770.3 Solanum lycopersicum HOM05D003968 ORTHO05D004077 1.7e-28 130.2 205 40.0
TPR.G15634 Trifolium pratense HOM05D003968 ORTHO05D004077 1.7e-28 130.2 193 59.6
PSO017G3780 Papaver somniferum HOM05D003968 ORTHO05D004077 2.2e-28 129.8 196 61.2
Ah.02g131150 Amaranthus hybridus HOM05D003968 ORTHO05D004077 2.9e-28 129.4 223 38.1
A09p38020 Brassica napus HOM05D003968 ORTHO05D004077 2.9e-28 129.4 172 60.5
BraA09t39312Z Brassica rapa HOM05D003968 ORTHO05D004077 2.9e-28 129.4 172 60.5
CSS0023603 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 2.9e-28 129.4 194 42.3
CDE06G0253 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 2.9e-28 129.4 186 39.8
CsaV3_6G007850 Cucumis sativus L. HOM05D003968 ORTHO05D004077 2.9e-28 129.4 201 52.7
MELO3C022347.2 Cucumis melo HOM05D003968 ORTHO05D004077 3.8e-28 129.0 201 50.2
Sopen01g005310 Solanum pennellii HOM05D003968 ORTHO05D004077 5.0e-28 128.6 216 37.5
unitig_749.g13321 Utricularia gibba HOM05D003968 ORTHO05D004077 1.1e-27 127.5 185 42.7
Ah.03g135740 Amaranthus hybridus HOM05D003968 ORTHO05D004077 1.9e-27 126.7 228 41.2
CDE02G3264 Ceratophyllum demersum HOM05D003278 ORTHO05D003738 7.2e-27 124.8 184 40.8
PGSC0003DMG400030000 Solanum tuberosum HOM05D003968 ORTHO05D004077 9.3e-27 124.4 212 37.3
DCAR_024638 Daucus carota HOM05D003968 ORTHO05D004077 4.6e-26 122.1 234 36.8
Cc11_g17440 Coffea canephora HOM05D003968 ORTHO05D004077 6.1e-26 121.7 234 45.3
CsaV3_4G002470 Cucumis sativus L. HOM05D003968 ORTHO05D004077 6.1e-26 121.7 203 55.7
Hund25497 Selenicereus undatus HOM05D003968 ORTHO05D004077 1.0e-25 120.9 225 39.1
MBI11_g37080_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 4.3e-24 115.5 149 53.7
unitig_26.g10423 Utricularia gibba HOM05D003968 ORTHO05D004077 7.4e-24 114.8 160 40.6
ATR0582G076 Amborella trichopoda HOM05D003968 ORTHO05D004077 2.4e-22 109.8 183 43.2
MELO3C017796.2 Cucumis melo HOM05D003968 ORTHO05D004077 2.4e-22 109.8 220 50.9
BolC5t31398H Brassica oleracea HOM05D003968 ORTHO05D004077 3.4e-21 105.9 172 57.0
PSO675G4434 Papaver somniferum HOM05D003968 ORTHO05D004077 3.8e-20 102.4 183 43.7
PSO229G0040 Papaver somniferum HOM05D003968 ORTHO05D004077 1.1e-19 100.9 179 40.2
Rhsim12G0020700 Rhododendron simsii HOM05D003968 ORTHO05D004077 1.1e-19 100.9 125 50.4
TAR622G0782 Trochodendron aralioides HOM05D003968 ORTHO05D004077 1.4e-19 100.5 186 39.8
SGA_v2.0_scaffold80G25944 Striga asiatica HOM05D003968 ORTHO05D004077 9.4e-19 97.8 117 47.0
Oeu019428.1 Olea europaea HOM05D003968 ORTHO05D004077 3.6e-18 95.9 189 34.9
AL1G41580 Arabidopsis lyrata HOM05D003968 ORTHO05D004077 1.8e-17 93.6 108 76.9
CSS0031909 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 1.5e-16 90.5 223 34.5
HPP92_023087 Vanilla planifolia HOM05D003968 ORTHO05D004077 1.3e-15 87.4 210 31.0
BcaC05g26622 Brassica carinata HOM05D003968 ORTHO05D004077 8.2e-15 84.7 150 52.7
HPP92_006446 Vanilla planifolia HOM05D003968 ORTHO05D004077 9.1e-14 81.3 218 31.2
HPP92_011550 Vanilla planifolia HOM05D003968 ORTHO05D004077 9.1e-14 81.3 222 31.1
Os02g0516400 Oryza sativa ssp. japonica HOM05D003968 ORTHO05D004077 2.9e-12 76.3 91 44.0
CDE09G1092 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 2.5e-11 73.2 182 30.8
Gorai.002G022000 Gossypium raimondii HOM05D003968 ORTHO05D004077 4.2e-11 72.4 201 46.3
MBI01_g34379_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 5.5e-11 72.0 117 43.6
Gohir.A01G021200 Gossypium hirsutum HOM05D003968 ORTHO05D004077 2.7e-10 69.7 202 45.5
Gohir.D01G019600 Gossypium hirsutum HOM05D003968 ORTHO05D004077 4.7e-10 68.9 201 45.3
CDE02G1122 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 3.9e-09 65.9 137 30.7
Pp3c27_4970 Physcomitrium patens HOM05D013579 ORTHO05D004077 1.3e-07 60.8 42 59.5
Lalb_Chr22g0349911 Lupinus albus HOM05D003968 ORTHO05D004077 2.2e-07 60.1 67 47.8
Pp3c16_12300 Physcomitrium patens HOM05D013579 ORTHO05D001508 2.2e-07 60.1 60 48.3
Mapoly0029s0076 Marchantia polymorpha HOM05D013579 ORTHO05D015305 1.1e-06 57.8 79 40.5
Pp3c5_5250 Physcomitrium patens HOM05D013579 ORTHO05D015305 4.1e-06 55.8 45 55.6
SMO347G0423 Selaginella moellendorffii HOM05D013579 ORTHO05D004077 5.3e-06 55.5 52 50.0
Pp3c6_24870 Physcomitrium patens HOM05D013579 ORTHO05D015305 7.0e-06 55.1 41 53.7
SEGI_23541 Sequoiadendron giganteum HOM05D012184 ORTHO05D004077 9.1e-06 54.7 166 25.9


User provided reference genes

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