Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G33450 Arabidopsis thaliana HOM05D006230 ORTHO05D007598 1.9e-72 275.8 144 100.0
Carub.0004s1508 Capsella rubella HOM05D006230 ORTHO05D007598 3.4e-69 265.0 144 95.1
AL4G29120 Arabidopsis lyrata HOM05D006230 ORTHO05D007598 5.7e-69 264.2 144 95.1
CARHR127460 Cardamine hirsuta HOM05D006230 ORTHO05D007598 1.3e-68 263.1 144 95.1
Sp4g15790 Schrenkiella parvula HOM05D006230 ORTHO05D007598 1.2e-66 256.5 145 93.1
Thhalv10017390m.g Eutrema salsugineum HOM05D006230 ORTHO05D007598 3.4e-61 238.4 147 88.4
Aa31LG5G3840 Aethionema arabicum HOM05D006230 ORTHO05D007598 3.7e-60 235.0 146 87.0
Sp1g03290 Schrenkiella parvula HOM05D006230 ORTHO05D007598 8.3e-60 233.8 146 85.6
BolC4t27775H Brassica oleracea HOM05D006230 ORTHO05D007598 1.1e-59 233.4 147 87.8
BraA04t18078Z Brassica rapa HOM05D006230 ORTHO05D007598 2.4e-59 232.3 147 87.1
C04p62980 Brassica napus HOM05D006230 ORTHO05D007598 9.2e-59 230.3 147 87.1
A04p25750 Brassica napus HOM05D006230 ORTHO05D007598 5.9e-58 227.6 148 86.5
BcaB02g10562 Brassica carinata HOM05D006230 ORTHO05D007598 1.3e-57 226.5 143 87.4
BcaC02g11431 Brassica carinata HOM05D006230 ORTHO05D007598 2.3e-57 225.7 146 84.9
C04p15650 Brassica napus HOM05D006230 ORTHO05D007598 2.3e-57 225.7 146 84.9
BcaB06g28689 Brassica carinata HOM05D006230 ORTHO05D007598 2.9e-57 225.3 148 85.1
Carub.0001s0365 Capsella rubella HOM05D006230 ORTHO05D007598 3.3e-56 221.9 143 83.2
AL1G14110 Arabidopsis lyrata HOM05D006230 ORTHO05D007598 2.8e-55 218.8 144 83.3
BolC4t23134H Brassica oleracea HOM05D006230 ORTHO05D007598 1.0e-54 216.9 147 83.0
THA.LOC104801077 Tarenaya hassleriana HOM05D006230 ORTHO05D007598 2.3e-54 215.7 147 77.6
BcaC02g07821 Brassica carinata HOM05D006230 ORTHO05D007598 3.7e-52 208.4 148 83.1
Cfa014753 Carpinus fangiana HOM05D006230 ORTHO05D007598 3.9e-49 198.4 152 71.7
Ciclev10006136m.g Citrus clementina HOM05D006230 ORTHO05D007598 3.3e-48 195.3 155 70.3
Haze_11428 Corylus avellana HOM05D006230 ORTHO05D007598 5.6e-48 194.5 152 70.4
Potri.010G068500 Populus trichocarpa HOM05D006230 ORTHO05D007598 1.2e-47 193.4 133 75.9
Sabra10G0038500 Salix brachista HOM05D006230 ORTHO05D007598 1.2e-47 193.4 133 75.9
Atru.chr4.1981 Acer truncatum HOM05D006230 ORTHO05D007598 3.6e-47 191.8 146 73.3
CiPaw.02G108600 Carya illinoinensis HOM05D006230 ORTHO05D007598 8.0e-47 190.7 135 77.0
Lalb_Chr01g0020881 Lupinus albus HOM05D006230 ORTHO05D007598 8.0e-47 190.7 129 77.5
MD16G1223800 Malus domestica HOM05D006230 ORTHO05D007598 3.1e-46 188.7 114 82.5
QL06p019992 Quercus lobata HOM05D006230 ORTHO05D007598 3.1e-46 188.7 130 78.5
Manes.15G043800 Manihot esculenta HOM05D006230 ORTHO05D007598 4.0e-46 188.3 133 71.4
Potri.008G169800 Populus trichocarpa HOM05D006230 ORTHO05D007598 8.9e-46 187.2 120 80.0
MD13G1218400 Malus domestica HOM05D006230 ORTHO05D007598 2.0e-45 186.0 111 83.8
TWI73G0434 Tripterygium wilfordii HOM05D006230 ORTHO05D007598 2.0e-45 186.0 116 81.9
RcHm_v2.0_Chr4g0394691 Rosa chinensis HOM05D006230 ORTHO05D007598 3.4e-45 185.3 129 72.9
CSS0007771 Camellia sinensis var. sinensis HOM05D006230 ORTHO05D007598 4.4e-45 184.9 135 71.1
Dinv27088 Davidia involucrata HOM05D006230 ORTHO05D007598 5.8e-45 184.5 130 76.9
FvH4_4g04200 Fragaria vesca HOM05D006230 ORTHO05D007598 5.8e-45 184.5 130 71.5
Lalb_Chr03g0037521 Lupinus albus HOM05D006230 ORTHO05D007598 5.8e-45 184.5 131 76.3
FAN12G2171 Fragaria x ananassa HOM05D006230 ORTHO05D007598 7.5e-45 184.1 130 71.5
FAN17G1889 Fragaria x ananassa HOM05D006230 ORTHO05D007598 7.5e-45 184.1 128 72.7
COL.COLO4_15930 Corchorus olitorius HOM05D006230 ORTHO05D007598 1.7e-44 183.0 146 69.2
Lj6g0026311 Lotus japonicus HOM05D006230 ORTHO05D007598 1.7e-44 183.0 133 72.9
Aqoxy2G03714 Aquilegia oxysepala HOM05D006230 ORTHO05D007598 2.9e-44 182.2 132 75.0
Thecc.04G260000 Theobroma cacao HOM05D006230 ORTHO05D007598 2.9e-44 182.2 146 69.2
Phvul.007G278700 Phaseolus vulgaris HOM05D006230 ORTHO05D007598 4.9e-44 181.4 116 79.3
EL10Ac3g04971 Beta vulgaris HOM05D006230 ORTHO05D007598 3.2e-43 178.7 126 78.6
Sed0003219 Sechium edule HOM05D006230 ORTHO05D007598 3.2e-43 178.7 134 73.1
Ca_05177_v3 Cicer arietinum L. HOM05D006230 ORTHO05D007598 4.1e-43 178.3 138 74.6
Duzib151G0304 Durio zibethinus HOM05D006230 ORTHO05D007598 5.4e-43 177.9 146 68.5
Eucgr.H02995 Eucalyptus grandis HOM05D006230 ORTHO05D007598 5.4e-43 177.9 118 79.7
Prupe.1G045100 Prunus persica HOM05D006230 ORTHO05D007598 5.4e-43 177.9 140 67.9
Gohir.A02G041200 Gossypium hirsutum HOM05D006230 ORTHO05D007598 7.0e-43 177.6 147 68.7
CANSAT78G0887 Cannabis sativa HOM05D006230 ORTHO05D007598 1.2e-42 176.8 125 77.6
Peaxi162Scf00602g00421 Petunia axillaris HOM05D006230 ORTHO05D007598 1.6e-42 176.4 117 80.3
Duzib212G0996 Durio zibethinus HOM05D006230 ORTHO05D007598 2.1e-42 176.0 146 67.1
Sc13g0005900 Simmondsia chinensis HOM05D006230 ORTHO05D007598 2.1e-42 176.0 144 66.0
Oeu023312.1 Olea europaea HOM05D006230 ORTHO05D007598 2.7e-42 175.6 125 76.0
CsaV3_3G011880 Cucumis sativus L. HOM05D006230 ORTHO05D007598 3.5e-42 175.3 135 73.3
Gohir.D02G047000 Gossypium hirsutum HOM05D006230 ORTHO05D007598 3.5e-42 175.3 147 68.0
CANSAT78G0232 Cannabis sativa HOM05D006230 ORTHO05D007598 4.6e-42 174.9 143 70.6
Gorai.005G052000 Gossypium raimondii HOM05D006230 ORTHO05D007598 4.6e-42 174.9 147 68.0
AUR62015538 Chenopodium quinoa HOM05D006230 ORTHO05D007598 6.0e-42 174.5 123 75.6
Medtr1g041320 Medicago truncatula HOM05D006230 ORTHO05D007598 6.0e-42 174.5 132 73.5
Nitab4.5_0006936g0040 Nicotiana tabacum HOM05D006230 ORTHO05D007598 6.0e-42 174.5 117 79.5
Psat6g103800 Pisum sativum HOM05D006230 ORTHO05D007598 6.0e-42 174.5 136 72.1
Glyma.10G002600 Glycine max HOM05D006230 ORTHO05D007598 7.8e-42 174.1 143 69.9
HanXRQChr14g0434851 Helianthus annuus HOM05D006230 ORTHO05D007598 7.8e-42 174.1 145 68.3
PGSC0003DMG400017161 Solanum tuberosum HOM05D006230 ORTHO05D007598 7.8e-42 174.1 118 78.0
CAN.G220.45 Capsicum annuum HOM05D006230 ORTHO05D007598 1.0e-41 173.7 144 66.0
Hma1.2p1_0112F.1_g054490 Hydrangea macrophylla HOM05D006230 ORTHO05D007598 1.3e-41 173.3 130 70.0
Nitab4.5_0001425g0090 Nicotiana tabacum HOM05D006230 ORTHO05D007598 1.3e-41 173.3 119 78.2
Sopen09g033320 Solanum pennellii HOM05D006230 ORTHO05D007598 1.3e-41 173.3 118 77.1
PSO017G6779 Papaver somniferum HOM05D006230 ORTHO05D007598 1.7e-41 172.9 131 72.5
Solyc09g090410.3 Solanum lycopersicum HOM05D006230 ORTHO05D007598 2.3e-41 172.6 118 76.3
TWI53G0221 Tripterygium wilfordii HOM05D006230 ORTHO05D007598 3.9e-41 171.8 142 69.0
Cpa.g.sc44.25 Carica papaya HOM05D006230 ORTHO05D007598 5.0e-41 171.4 126 73.0
ClCG05G004160 Citrullus lanatus HOM05D006230 ORTHO05D007598 5.0e-41 171.4 133 72.2
PSO063G4949 Papaver somniferum HOM05D006230 ORTHO05D007598 5.0e-41 171.4 131 71.8
TAR636G3560 Trochodendron aralioides HOM05D006230 ORTHO05D007598 6.6e-41 171.0 118 76.3
TPR.G32792 Trifolium pratense HOM05D006230 ORTHO05D007598 8.6e-41 170.6 123 75.6
Gohir.A10G109400 Gossypium hirsutum HOM05D006230 ORTHO05D007598 1.5e-40 169.9 146 65.8
Gorai.011G177300 Gossypium raimondii HOM05D006230 ORTHO05D007598 1.9e-40 169.5 146 66.4
GSVIVG01027870001 Vitis vinifera HOM05D006230 ORTHO05D007598 1.9e-40 169.5 120 74.2
ECA234G3973 Erigeron canadensis HOM05D006230 ORTHO05D007598 2.5e-40 169.1 138 68.1
Zm00001eb222850 Zea mays HOM05D006230 ORTHO05D007598 2.5e-40 169.1 144 65.3
Actinidia20827 Actinidia chinensis HOM05D006230 ORTHO05D007598 3.3e-40 168.7 116 75.0
MELO3C006400.2 Cucumis melo HOM05D006230 ORTHO05D007598 3.3e-40 168.7 147 68.0
Gohir.D10G157800 Gossypium hirsutum HOM05D006230 ORTHO05D007598 3.3e-40 168.7 146 66.4
Lsat_1_v5_gn_2_39681 Lactuca sativa HOM05D006230 ORTHO05D007598 4.3e-40 168.3 143 66.4
PGR004G2031 Punica granatum HOM05D006230 ORTHO05D007598 5.6e-40 167.9 136 69.9
Sed0015876 Sechium edule HOM05D006230 ORTHO05D007598 9.5e-40 167.2 135 68.1
Cc03_g05900 Coffea canephora HOM05D006230 ORTHO05D007598 2.1e-39 166.0 119 71.4
ATR0736G074 Amborella trichopoda HOM05D006230 ORTHO05D007598 4.7e-39 164.9 116 77.6
Actinidia35808 Actinidia chinensis HOM05D006230 ORTHO05D007598 8.1e-39 164.1 130 67.7
CDE05G0971 Ceratophyllum demersum HOM05D006230 ORTHO05D007598 8.1e-39 164.1 133 68.4
CDE11G0022 Ceratophyllum demersum HOM05D006230 ORTHO05D007598 1.1e-38 163.7 124 71.8
DCAR_002306 Daucus carota HOM05D006230 ORTHO05D007598 1.8e-38 162.9 124 71.8
Zm00001eb047510 Zea mays HOM05D006230 ORTHO05D007598 2.3e-38 162.5 128 68.0
vmacro08530 Vaccinium macrocarpon HOM05D006230 ORTHO05D007598 5.2e-38 161.4 116 74.1
Os05g0101400 Oryza sativa ssp. japonica HOM05D006230 ORTHO05D007598 8.9e-38 160.6 142 64.8
Oeu059405.1 Olea europaea HOM05D006230 ORTHO05D007598 1.5e-37 159.8 160 58.1
RcHm_v2.0_Chr4g0394651 Rosa chinensis HOM05D006230 ORTHO05D007598 3.4e-37 158.7 128 64.1
Migut.G00496 Erythranthe guttata HOM05D006230 ORTHO05D007598 9.9e-37 157.1 151 60.3
Hund11917 Selenicereus undatus HOM05D006230 ORTHO05D007598 1.7e-36 156.4 128 68.8
HPP92_012809 Vanilla planifolia HOM05D006230 ORTHO05D007598 4.9e-36 154.8 143 61.5
arahy.Tifrunner.gnm1.ann1.ADZ0J4 Arachis hypogaea HOM05D006230 ORTHO05D007598 1.9e-35 152.9 78 94.9
SalBow3G4585 Salvia bowleyana HOM05D006230 ORTHO05D007598 4.1e-35 151.8 138 58.7
unitig_32.g10851 Utricularia gibba HOM05D006230 ORTHO05D007598 1.2e-34 150.2 125 64.0
SGA_v2.0_scaffold67G22731 Striga asiatica HOM05D006230 ORTHO05D007598 2.7e-34 149.1 123 64.2
Thecc.10G124200 Theobroma cacao HOM05D006230 ORTHO05D007598 1.3e-33 146.7 78 91.0
Prupe.8G083300 Prunus persica HOM05D006230 ORTHO05D007598 1.9e-32 142.9 82 84.1
Rhsim04G0174900 Rhododendron simsii HOM05D006230 ORTHO05D007598 1.6e-31 139.8 111 70.3
MD00G1118000 Malus domestica HOM05D006230 ORTHO05D007598 3.6e-31 138.7 75 88.0
SEGI_13554 Sequoiadendron giganteum HOM05D006230 ORTHO05D007598 1.8e-30 136.3 124 62.9
AagrBONN_evm.TU.Sc2ySwM_228.3795 Anthoceros agrestis HOM05D006230 ORTHO05D007598 5.4e-27 124.8 130 55.4
Pp3c6_1140 Physcomitrium patens HOM05D006230 ORTHO05D007598 8.7e-25 117.5 128 54.7
Pp3c5_28500 Physcomitrium patens HOM05D006230 ORTHO05D007598 1.9e-24 116.3 128 55.5
Ah.04g155450 Amaranthus hybridus HOM05D000071 ORTHO05D007598 2.5e-24 115.9 92 67.4
Mapoly0087s0077 Marchantia polymorpha HOM05D006230 ORTHO05D007598 3.6e-23 112.1 118 53.4
Duzib052G0467 Durio zibethinus HOM05D006230 ORTHO05D007598 2.4e-22 109.4 118 54.2
SMO131G0001 Selaginella moellendorffii HOM05D006230 ORTHO05D007598 9.0e-22 107.5 75 66.7
CBR_g23072 Chara braunii HOM05D006230 ORTHO05D007598 4.4e-21 105.1 78 67.9
Cre06.g265800 Chlamydomonas reinhardtii HOM05D006230 ORTHO05D007598 3.9e-17 92.0 110 42.7
MCO07G061 Micromonas commoda HOM05D006230 ORTHO05D007598 5.6e-16 88.2 73 60.3
Nn3g19733 Nelumbo nucifera HOM05D006230 ORTHO05D007598 7.4e-08 61.2 36 86.1
VMungo0684G0001 Vigna mungo HOM05D006230 ORTHO05D007598 1.8e-06 56.6 65 44.6


User provided reference genes

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