Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G33180 Arabidopsis thaliana HOM05D007635 ORTHO05D009612 2.2e-88 328.9 167 100.0
AL4G28740 Arabidopsis lyrata HOM05D007635 ORTHO05D009612 6.0e-78 294.3 167 89.2
AL569U10010 Arabidopsis lyrata HOM05D007635 ORTHO05D009612 6.0e-78 294.3 167 89.2
Carub.0004s1461 Capsella rubella HOM05D007635 ORTHO05D009612 6.6e-77 290.8 167 88.0
CARHR127160 Cardamine hirsuta HOM05D007635 ORTHO05D009612 1.7e-72 276.2 167 83.8
Thhalv10017331m.g Eutrema salsugineum HOM05D007635 ORTHO05D009612 1.1e-71 273.5 167 83.2
Sp4g15480 Schrenkiella parvula HOM05D007635 ORTHO05D009612 1.4e-71 273.1 167 82.0
BcaB06g28657 Brassica carinata HOM05D007635 ORTHO05D009612 1.1e-68 263.5 167 81.4
BcaC02g07856 Brassica carinata HOM05D007635 ORTHO05D009612 6.2e-67 257.7 167 79.0
BolC4t27744H Brassica oleracea HOM05D007635 ORTHO05D009612 6.2e-67 257.7 167 79.0
BraA04t18051Z Brassica rapa HOM05D007635 ORTHO05D009612 8.1e-67 257.3 167 79.6
C04p62620 Brassica napus HOM05D007635 ORTHO05D009612 9.0e-66 253.8 167 77.8
A04p25480 Brassica napus HOM05D007635 ORTHO05D009612 4.5e-65 251.5 167 77.8
Aa31LG5G4080 Aethionema arabicum HOM05D007635 ORTHO05D009612 5.6e-60 234.6 167 71.9
Eucgr.K02034 Eucalyptus grandis HOM05D007635 ORTHO05D009612 5.9e-41 171.4 121 70.2
Eucgr.L01778 Eucalyptus grandis HOM05D007635 ORTHO05D009612 1.7e-40 169.9 103 78.6
Gorai.011G162800 Gossypium raimondii HOM05D007635 ORTHO05D009612 2.9e-40 169.1 160 58.8
Duzib268G0659 Durio zibethinus HOM05D007635 ORTHO05D009612 5.0e-40 168.3 110 73.6
COL.COLO4_05721 Corchorus olitorius HOM05D001044 ORTHO05D007204 2.5e-39 166.0 119 70.6
Potri.001G053700 Populus trichocarpa HOM05D007635 ORTHO05D009612 9.3e-39 164.1 172 55.8
QL07p037425 Quercus lobata HOM05D007635 ORTHO05D009612 2.7e-38 162.5 116 69.8
PGR142G1826 Punica granatum HOM05D007635 ORTHO05D009612 3.6e-38 162.2 121 68.6
GSVIVG01030149001 Vitis vinifera HOM05D007635 ORTHO05D009612 3.9e-37 158.7 114 68.4
CANSAT64G1146 Cannabis sativa HOM05D007635 ORTHO05D009612 6.7e-37 157.9 109 72.5
Cfa016671 Carpinus fangiana HOM05D003127 ORTHO05D003709 8.8e-37 157.5 129 65.1
Ciclev10006014m.g Citrus clementina HOM05D007635 ORTHO05D009612 1.1e-36 157.1 133 62.4
Haze_19686 Corylus avellana HOM05D007635 ORTHO05D009612 1.1e-36 157.1 116 70.7
Ca_09045_v3 Cicer arietinum L. HOM05D007635 ORTHO05D009612 3.3e-36 155.6 147 57.1
Manes.15G049600 Manihot esculenta HOM05D007635 ORTHO05D009612 4.3e-36 155.2 134 61.2
FAN02G0889 Fragaria x ananassa HOM05D007635 ORTHO05D009612 5.7e-36 154.8 124 66.9
RcHm_v2.0_Chr3g0475481 Rosa chinensis HOM05D007635 ORTHO05D009612 5.7e-36 154.8 124 65.3
CiPaw.09G019400 Carya illinoinensis HOM05D007635 ORTHO05D009612 7.4e-36 154.5 165 53.3
Dinv26633 Davidia involucrata HOM05D007635 ORTHO05D009612 7.4e-36 154.5 113 67.3
FvH4_6g20030 Fragaria vesca HOM05D007635 ORTHO05D009612 7.4e-36 154.5 124 66.1
FAN14G1263 Fragaria x ananassa HOM05D007635 ORTHO05D009612 7.4e-36 154.5 124 66.1
Ah.05g169970 Amaranthus hybridus HOM05D007635 ORTHO05D009612 9.7e-36 154.1 112 71.4
PGSC0003DMG400021288 Solanum tuberosum HOM05D007635 ORTHO05D009612 9.7e-36 154.1 153 56.9
unitig_26.g8994 Utricularia gibba HOM05D007635 ORTHO05D009612 9.7e-36 154.1 104 75.0
Prupe.7G097800 Prunus persica HOM05D007635 ORTHO05D009612 1.3e-35 153.7 93 79.6
CAN.G904.10 Capsicum annuum HOM05D007635 ORTHO05D009612 1.7e-35 153.3 133 61.7
AUR62038521 Chenopodium quinoa HOM05D007635 ORTHO05D009612 1.7e-35 153.3 96 77.1
Nn1g07615 Nelumbo nucifera HOM05D007635 ORTHO05D009612 1.7e-35 153.3 96 78.1
Sopen10g003580 Solanum pennellii HOM05D007635 ORTHO05D009612 1.7e-35 153.3 117 69.2
Medtr7g105840 Medicago truncatula HOM05D007635 ORTHO05D009612 2.8e-35 152.5 118 65.3
Nitab4.5_0000923g0190 Nicotiana tabacum HOM05D007635 ORTHO05D009612 2.8e-35 152.5 120 65.0
Peaxi162Scf00035g02213 Petunia axillaris HOM05D007635 ORTHO05D009612 2.8e-35 152.5 111 68.5
AUR62027757 Chenopodium quinoa HOM05D007635 ORTHO05D009612 3.7e-35 152.1 112 69.6
FAN05G0948 Fragaria x ananassa HOM05D007635 ORTHO05D009612 3.7e-35 152.1 124 65.3
TWI09G0209 Tripterygium wilfordii HOM05D007635 ORTHO05D009612 3.7e-35 152.1 172 52.9
Solyc10g007670.4 Solanum lycopersicum HOM05D007635 ORTHO05D009612 4.8e-35 151.8 116 69.0
arahy.Tifrunner.gnm1.ann1.X3I9NV Arachis hypogaea HOM05D007635 ORTHO05D009612 1.1e-34 150.6 102 72.5
TAR374G1245 Trochodendron aralioides HOM05D007635 ORTHO05D009612 1.4e-34 150.2 96 75.0
CSS0021722 Camellia sinensis var. sinensis HOM05D007635 ORTHO05D009612 1.8e-34 149.8 96 76.0
CSS0041027 Camellia sinensis var. sinensis HOM05D007635 ORTHO05D009612 1.8e-34 149.8 96 76.0
Lalb_Chr20g0111441 Lupinus albus HOM05D007635 ORTHO05D009612 1.8e-34 149.8 94 75.5
Psat3g030120 Pisum sativum HOM05D003127 ORTHO05D003709 1.8e-34 149.8 135 60.0
ATR0751G143 Amborella trichopoda HOM05D007635 ORTHO05D009612 2.4e-34 149.4 105 70.5
Glyma.19G198300 Glycine max HOM05D007635 ORTHO05D009612 2.4e-34 149.4 105 69.5
Phvul.001G194300 Phaseolus vulgaris HOM05D007635 ORTHO05D009612 2.4e-34 149.4 119 62.2
Cc05_g09950 Coffea canephora HOM05D007635 ORTHO05D009612 3.1e-34 149.1 96 78.1
PSO541G5044 Papaver somniferum HOM05D007635 ORTHO05D009612 3.1e-34 149.1 93 75.3
PSO675G5663 Papaver somniferum HOM05D007635 ORTHO05D009612 3.1e-34 149.1 93 75.3
FAN09G2965 Fragaria x ananassa HOM05D007635 ORTHO05D009612 4.1e-34 148.7 124 64.5
Os09g0481800 Oryza sativa ssp. japonica HOM05D007635 ORTHO05D009612 5.3e-34 148.3 124 64.5
MSTRG.12845 Avicennia marina HOM05D007635 ORTHO05D009612 6.9e-34 147.9 116 65.5
ClCG10G018500 Citrullus lanatus HOM05D003127 ORTHO05D003709 6.9e-34 147.9 115 66.1
VMungo1383G2560 Vigna mungo HOM05D007635 ORTHO05D009612 6.9e-34 147.9 94 73.4
Zm00001eb101710 Zea mays HOM05D007635 ORTHO05D009612 9.1e-34 147.5 119 63.9
CsaV3_3G037770 Cucumis sativus L. HOM05D007635 ORTHO05D009612 1.2e-33 147.1 93 75.3
Lj1g0026019 Lotus japonicus HOM05D007635 ORTHO05D009612 1.2e-33 147.1 94 74.5
TPR.G23321 Trifolium pratense HOM05D007635 ORTHO05D009612 1.2e-33 147.1 136 59.6
CBR_g50773 Chara braunii HOM05D007635 ORTHO05D009612 1.5e-33 146.7 159 52.8
Glyma.03G200700 Glycine max HOM05D007635 ORTHO05D009612 2.6e-33 146.0 121 62.8
Sc26g0000090 Simmondsia chinensis HOM05D007635 ORTHO05D009612 7.7e-33 144.4 96 74.0
Lsat_1_v5_gn_7_99401 Lactuca sativa HOM05D007635 ORTHO05D009612 2.9e-32 142.5 92 72.8
Actinidia12337 Actinidia chinensis HOM05D007635 ORTHO05D009612 6.5e-32 141.4 171 48.5
MBI15_g36010_MAGBIO Magnolia biondii HOM05D007635 ORTHO05D009612 6.5e-32 141.4 167 49.7
AagrBONN_evm.TU.Sc2ySwM_362.2476 Anthoceros agrestis HOM05D007635 ORTHO05D009612 8.5e-32 141.0 93 73.1
Pp3c11_15670 Physcomitrium patens HOM05D007635 ORTHO05D009612 8.5e-32 141.0 100 68.0
MBI15_g47427_MAGBIO Magnolia biondii HOM05D007635 ORTHO05D009612 1.1e-31 140.6 167 49.7
SEGI_23489 Sequoiadendron giganteum HOM05D007635 ORTHO05D009612 2.5e-31 139.4 123 59.3
SGA_v2.0_scaffold130G34228 Striga asiatica HOM05D007635 ORTHO05D009612 4.2e-31 138.7 105 71.4
Rhsim06G0182000 Rhododendron simsii HOM05D007635 ORTHO05D009612 5.5e-31 138.3 164 50.6
Rhsim06G0183000 Rhododendron simsii HOM05D007635 ORTHO05D009612 5.5e-31 138.3 164 50.6
ECA236G3620 Erigeron canadensis HOM05D007635 ORTHO05D009612 1.6e-30 136.7 93 69.9
vmacro12032 Vaccinium macrocarpon HOM05D007635 ORTHO05D009612 2.3e-29 132.9 167 48.5
EL10Ac1g01217 Beta vulgaris HOM05D007635 ORTHO05D009612 1.5e-28 130.2 80 78.8
Atru.BG.99.p Acer truncatum HOM05D007635 ORTHO05D009612 1.7e-27 126.7 71 83.1
MD12G1037400 Malus domestica HOM05D007635 ORTHO05D009612 3.1e-26 122.5 103 64.1
Nitab4.5_0002209g0110 Nicotiana tabacum HOM05D007635 ORTHO05D009612 3.8e-24 115.5 140 47.1
Migut.H02083 Erythranthe guttata HOM05D007635 ORTHO05D009612 2.5e-23 112.8 134 47.8
Cpa.g.sc59.77 Carica papaya HOM05D007635 ORTHO05D009612 3.2e-23 112.5 90 60.0
Aqoxy2G03911 Aquilegia oxysepala HOM05D007635 ORTHO05D009612 5.5e-23 111.7 89 59.6
FAN05G1739 Fragaria x ananassa HOM05D007635 ORTHO05D009612 3.6e-22 109.0 62 80.6
HanXRQChr11g0329581 Helianthus annuus HOM05D007635 ORTHO05D009612 1.8e-21 106.7 64 76.6
Sed0019283 Sechium edule HOM05D003127 ORTHO05D003709 1.8e-21 106.7 76 68.4
MELO3C009519.2 Cucumis melo HOM05D003127 ORTHO05D003709 2.0e-20 103.2 63 76.2
Pp3c11_15610 Physcomitrium patens HOM05D007635 ORTHO05D009612 1.7e-19 100.1 70 67.1
HPP92_017857 Vanilla planifolia HOM05D007635 ORTHO05D009612 5.3e-18 95.1 63 68.3
Gohir.A10G120700 Gossypium hirsutum HOM05D007635 ORTHO05D009612 8.2e-11 71.2 99 45.5
Gohir.D10G145600 Gossypium hirsutum HOM05D007635 ORTHO05D009612 1.4e-10 70.5 99 44.4
Thecc.04G214500 Theobroma cacao HOM05D007635 ORTHO05D009612 7.0e-10 68.2 67 52.2


User provided reference genes

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