Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G32900 Arabidopsis thaliana HOM05D004734 ORTHO05D006019 0.0e+00 1421.8 743 100.0
AL4G28410 Arabidopsis lyrata HOM05D004734 ORTHO05D006019 0.0e+00 1342.8 758 92.9
CARHR126840 Cardamine hirsuta HOM05D004734 ORTHO05D006019 0.0e+00 1307.4 758 89.4
Carub.0004s1431 Capsella rubella HOM05D004734 ORTHO05D006019 0.0e+00 1298.1 756 90.2
Thhalv10016293m.g Eutrema salsugineum HOM05D004734 ORTHO05D006019 0.0e+00 1275.0 759 87.4
Sp4g15270 Schrenkiella parvula HOM05D004734 ORTHO05D006019 0.0e+00 1261.9 756 86.8
BcaC01g05869 Brassica carinata HOM05D004734 ORTHO05D006019 0.0e+00 1245.3 755 84.6
BcaB01g03944 Brassica carinata HOM05D004734 ORTHO05D006019 0.0e+00 1237.2 755 84.2
BraA03t11112Z Brassica rapa HOM05D004734 ORTHO05D006019 0.0e+00 1236.1 778 82.5
BolC3t14542H Brassica oleracea HOM05D004734 ORTHO05D006019 0.0e+00 1231.9 778 81.9
BcaB02g10504 Brassica carinata HOM05D004734 ORTHO05D006019 0.0e+00 1223.0 753 83.5
Aa31LG5G4570 Aethionema arabicum HOM05D004734 ORTHO05D006019 0.0e+00 1191.0 753 81.4
A05p12730 Brassica napus HOM05D004734 ORTHO05D006019 0.0e+00 1178.7 762 80.2
BraA05t20212Z Brassica rapa HOM05D004734 ORTHO05D006019 0.0e+00 1178.3 771 79.1
BolC4t23215H Brassica oleracea HOM05D004734 ORTHO05D006019 0.0e+00 1174.5 770 79.4
THA.LOC104826129 Tarenaya hassleriana HOM05D004734 ORTHO05D006019 0.0e+00 1157.9 757 78.9
A03p18530 Brassica napus HOM05D004734 ORTHO05D006019 0.0e+00 1154.0 731 82.6
C03p21580 Brassica napus HOM05D004734 ORTHO05D006019 0.0e+00 1146.0 729 82.0
C04p16650 Brassica napus HOM05D004734 ORTHO05D006019 0.0e+00 1142.1 754 79.2
Atru.chr6.3288 Acer truncatum HOM05D004734 ORTHO05D006019 5.6e-277 957.6 756 64.8
Gohir.D07G174400 Gossypium hirsutum HOM05D004734 ORTHO05D006019 3.1e-275 951.8 758 63.6
Ciclev10014379m.g Citrus clementina HOM05D004734 ORTHO05D006019 2.6e-274 948.7 757 64.5
Duzib138G1622 Durio zibethinus HOM05D004734 ORTHO05D006019 3.4e-274 948.3 774 63.4
Potri.002G223600 Populus trichocarpa HOM05D004734 ORTHO05D006019 2.2e-273 945.7 758 64.8
Manes.12G058300 Manihot esculenta HOM05D004734 ORTHO05D006019 1.8e-267 926.0 757 63.1
Cfa014305 Carpinus fangiana HOM05D004734 ORTHO05D006019 3.4e-266 921.8 764 62.2
Glyma.02G266800 Glycine max HOM05D004734 ORTHO05D006019 3.4e-266 921.8 756 62.4
CiPaw.04G108800 Carya illinoinensis HOM05D004734 ORTHO05D006019 1.7e-265 919.5 765 62.0
TWI75G1245 Tripterygium wilfordii HOM05D004734 ORTHO05D006019 1.9e-264 916.0 757 62.9
Gorai.001G195000 Gossypium raimondii HOM05D004734 ORTHO05D006019 7.9e-263 910.6 758 61.5
Glyma.14G050700 Glycine max HOM05D004734 ORTHO05D006019 1.3e-262 909.8 752 62.2
CANSAT64G0097 Cannabis sativa HOM05D004734 ORTHO05D006019 7.4e-261 904.0 756 62.4
Phvul.008G215200 Phaseolus vulgaris HOM05D004734 ORTHO05D006019 4.8e-260 901.4 756 61.4
FAN14G4409 Fragaria x ananassa HOM05D004734 ORTHO05D006019 2.4e-259 899.0 752 61.6
Prupe.3G208500 Prunus persica HOM05D004734 ORTHO05D006019 5.3e-259 897.9 753 62.2
FAN09G1456 Fragaria x ananassa HOM05D004734 ORTHO05D006019 9.0e-259 897.1 769 60.5
RcHm_v2.0_Chr2g0157781 Rosa chinensis HOM05D004734 ORTHO05D006019 2.0e-258 896.0 752 61.6
Dinv08709 Davidia involucrata HOM05D004734 ORTHO05D006019 2.2e-257 892.5 764 60.7
MD09G1116200 Malus domestica HOM05D004734 ORTHO05D006019 7.9e-255 884.0 752 61.2
Hma1.2p1_2840F.1_g329320 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 6.7e-254 880.9 754 61.1
MD17G1107900 Malus domestica HOM05D004734 ORTHO05D006019 1.5e-253 879.8 752 61.2
FAN02G4553 Fragaria x ananassa HOM05D004734 ORTHO05D006019 1.3e-252 876.7 751 60.2
FAN05G4875 Fragaria x ananassa HOM05D004734 ORTHO05D006019 4.8e-252 874.8 764 59.4
Haze_12752 Corylus avellana HOM05D004734 ORTHO05D006019 6.2e-252 874.4 744 61.3
Atru.chr6.3273 Acer truncatum HOM05D004734 ORTHO05D006019 1.8e-251 872.8 718 62.7
PGR042G3679 Punica granatum HOM05D004734 ORTHO05D006019 6.9e-251 870.9 762 59.6
TAR629G0221 Trochodendron aralioides HOM05D004734 ORTHO05D006019 9.0e-251 870.5 761 59.4
CSS0018671 Camellia sinensis var. sinensis HOM05D004734 ORTHO05D006019 4.5e-250 868.2 767 59.6
arahy.Tifrunner.gnm1.ann1.L0FFGY Arachis hypogaea HOM05D004734 ORTHO05D006019 7.6e-250 867.5 767 58.8
vmacro12148 Vaccinium macrocarpon HOM05D004734 ORTHO05D006019 1.3e-249 866.7 805 57.6
Eucgr.A01088 Eucalyptus grandis HOM05D004734 ORTHO05D006019 1.5e-245 853.2 759 58.4
arahy.Tifrunner.gnm1.ann1.LYY30L Arachis hypogaea HOM05D004734 ORTHO05D006019 9.6e-245 850.5 785 57.5
VMungo0647G1710 Vigna mungo HOM05D004734 ORTHO05D006019 4.8e-244 848.2 729 60.2
Lalb_Chr10g0105531 Lupinus albus HOM05D004734 ORTHO05D006019 5.3e-243 844.7 761 58.1
Actinidia09755 Actinidia chinensis HOM05D004734 ORTHO05D006019 8.5e-241 837.4 733 59.5
Sed0026816 Sechium edule HOM05D004734 ORTHO05D006019 1.1e-240 837.0 757 58.0
QL01p037797 Quercus lobata HOM05D004734 ORTHO05D006019 1.6e-239 833.2 714 60.4
Solyc05g043350.4 Solanum lycopersicum HOM05D004734 ORTHO05D006019 7.9e-239 830.9 755 56.6
ClCG02G018160 Citrullus lanatus HOM05D004734 ORTHO05D006019 3.9e-238 828.6 758 57.1
Sc21g0001080 Simmondsia chinensis HOM05D004734 ORTHO05D006019 5.1e-238 828.2 757 56.4
MELO3C019721.2 Cucumis melo HOM05D004734 ORTHO05D006019 7.4e-237 824.3 772 56.9
Cc00_g21460 Coffea canephora HOM05D004734 ORTHO05D006019 9.7e-237 823.9 762 56.4
GSVIVG01030526001 Vitis vinifera HOM05D004734 ORTHO05D006019 3.7e-236 822.0 756 58.5
Nn1g07321 Nelumbo nucifera HOM05D004734 ORTHO05D006019 2.4e-235 819.3 758 56.3
Nitab4.5_0009060g0010 Nicotiana tabacum HOM05D004734 ORTHO05D006019 4.1e-235 818.5 762 56.4
DCAR_012916 Daucus carota HOM05D004734 ORTHO05D006019 1.2e-234 817.0 763 56.2
Duzib211G0196 Durio zibethinus HOM05D004734 ORTHO05D006019 1.7e-233 813.1 746 57.6
Nitab4.5_0000006g0360 Nicotiana tabacum HOM05D004734 ORTHO05D006019 2.9e-233 812.4 770 55.8
CAN.G387.3 Capsicum annuum HOM05D004734 ORTHO05D006019 5.5e-232 808.1 758 55.0
Migut.A01159 Erythranthe guttata HOM05D004734 ORTHO05D006019 1.5e-229 800.0 763 54.5
SalBow7G0507 Salvia bowleyana HOM05D004734 ORTHO05D006019 4.3e-229 798.5 760 53.9
TPR.G25656 Trifolium pratense HOM05D004734 ORTHO05D006019 4.8e-228 795.0 679 60.4
Aqoxy2G03788 Aquilegia oxysepala HOM05D004734 ORTHO05D006019 6.3e-228 794.7 774 55.6
HanXRQChr16g0508221 Helianthus annuus HOM05D004734 ORTHO05D006019 3.8e-225 785.4 754 54.6
SGA_v2.0_scaffold73G24401 Striga asiatica HOM05D004734 ORTHO05D006019 3.0e-222 775.8 784 52.0
Oeu054514.1 Olea europaea HOM05D004734 ORTHO05D006019 3.9e-222 775.4 763 55.7
HanXRQChr14g0438421 Helianthus annuus HOM05D004734 ORTHO05D006019 1.5e-221 773.5 754 54.4
EL10Ac9g22816 Beta vulgaris HOM05D004734 ORTHO05D006019 1.1e-216 757.3 794 51.3
PSO017G2150 Papaver somniferum HOM05D004734 ORTHO05D006019 5.7e-213 745.0 767 52.5
Lsat_1_v5_gn_7_94920 Lactuca sativa HOM05D004734 ORTHO05D006019 4.8e-212 741.9 725 53.9
Thecc.01G184100 Theobroma cacao HOM05D004734 ORTHO05D006019 1.1e-208 730.7 575 65.7
Lj8A131T30 Lonicera japonica HOM05D004734 ORTHO05D006019 2.5e-208 729.6 733 55.0
AUR62017577 Chenopodium quinoa HOM05D004734 ORTHO05D006019 1.2e-207 727.2 750 51.2
Gohir.A07G168100 Gossypium hirsutum HOM05D004734 ORTHO05D006019 3.0e-206 722.6 573 64.0
Ah.01g001840 Amaranthus hybridus HOM05D004734 ORTHO05D006019 1.8e-203 713.4 759 50.6
Cpa.g.sc132.37 Carica papaya HOM05D004734 ORTHO05D006019 1.8e-203 713.4 694 55.9
CDE07G0136 Ceratophyllum demersum HOM05D004734 ORTHO05D006019 9.5e-200 701.0 745 49.7
Rhsim06G0169400 Rhododendron simsii HOM05D004734 ORTHO05D006019 9.8e-197 691.0 754 51.2
FvH4_6g41900 Fragaria vesca HOM05D004734 ORTHO05D006019 3.5e-194 682.6 560 62.5
Psat2g026760 Pisum sativum HOM05D004734 ORTHO05D006019 8.6e-193 677.9 564 62.1
Medtr5g084830 Medicago truncatula HOM05D004734 ORTHO05D006019 1.9e-192 676.8 565 61.9
TPR.G6822 Trifolium pratense HOM05D004734 ORTHO05D006019 3.3e-192 676.0 576 59.9
LjContig00029g0002265 Lotus japonicus HOM05D004734 ORTHO05D006019 8.0e-191 671.4 565 61.6
HPP92_000196 Vanilla planifolia HOM05D004734 ORTHO05D006019 1.5e-189 667.2 755 47.7
MBI16_g26176_MAGBIO Magnolia biondii HOM05D004734 ORTHO05D006019 1.7e-188 663.7 761 49.0
Sopen05g026560 Solanum pennellii HOM05D004734 ORTHO05D006019 3.3e-184 649.4 572 58.9
AUR62015114 Chenopodium quinoa HOM05D004734 ORTHO05D006019 1.2e-183 647.5 750 48.3
ECA236G2537 Erigeron canadensis HOM05D004734 ORTHO05D006019 2.1e-183 646.7 618 54.2
ATR1128G058 Amborella trichopoda HOM05D004734 ORTHO05D006019 1.2e-181 641.0 733 49.0
CsaV3_6G015550 Cucumis sativus L. HOM05D004734 ORTHO05D006019 2.6e-181 639.8 568 59.3
PSO675G0915 Papaver somniferum HOM05D004734 ORTHO05D006019 8.6e-177 624.8 658 51.1
PGSC0003DMG400019206 Solanum tuberosum HOM05D004734 ORTHO05D006019 6.4e-172 608.6 528 59.7
Dinv39761 Davidia involucrata HOM05D004734 ORTHO05D006019 2.1e-170 603.6 516 61.0
Hma1.2p1_2840F.1_g329330 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 1.1e-163 581.3 520 59.6
Hma1.2p1_0445F.1_g154190 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 1.3e-161 574.3 456 64.7
Sabra02G0171200 Salix brachista HOM05D004734 ORTHO05D006019 1.3e-161 574.3 502 60.6
Hund08442 Selenicereus undatus HOM05D004734 ORTHO05D006019 3.9e-161 572.8 750 44.0
Zm00001eb114880 Zea mays HOM05D004734 ORTHO05D006019 1.9e-147 527.3 601 47.4
SEGI_13952 Sequoiadendron giganteum HOM05D004734 ORTHO05D006019 4.6e-146 522.7 768 39.2
HPP92_000240 Vanilla planifolia HOM05D004734 ORTHO05D006019 5.6e-144 515.8 521 52.4
COL.COLO4_07254 Corchorus olitorius HOM05D004734 ORTHO05D006019 5.5e-123 446.0 546 48.7
SHI10094 Sapria himalayana HOM05D004734 ORTHO05D006019 3.0e-121 440.3 429 53.1
Ca_06067_v3 Cicer arietinum L. HOM05D004734 ORTHO05D006019 4.8e-119 433.0 482 50.6
Psat1g135920 Pisum sativum HOM05D004734 ORTHO05D006019 3.1e-118 430.3 332 65.4
Psat0s1468g0040 Pisum sativum HOM05D004734 ORTHO05D006019 2.6e-109 400.6 325 64.3
Mapoly0004s0108 Marchantia polymorpha HOM05D004734 ORTHO05D006019 6.7e-105 386.0 805 30.9
Peaxi162Scf00977g00312 Petunia axillaris HOM05D004734 ORTHO05D006019 1.8e-102 377.9 286 65.0
unitig_8.g4607 Utricularia gibba HOM05D004734 ORTHO05D006019 5.0e-100 369.8 377 53.6
Psat0s1468g0080 Pisum sativum HOM05D004734 ORTHO05D006019 1.5e-99 368.2 284 66.5
Peaxi162Scf00977g00315 Petunia axillaris HOM05D004734 ORTHO05D006019 2.8e-95 354.0 476 45.4
SMO200G0072 Selaginella moellendorffii HOM05D004734 ORTHO05D006019 5.3e-94 349.7 719 31.3
Os11g0545700 Oryza sativa ssp. japonica HOM05D004734 ORTHO05D006019 6.3e-87 326.2 281 58.7
Ca_06064_v3 Cicer arietinum L. HOM05D004734 ORTHO05D000733 2.3e-84 317.8 277 60.6
Pp3c3_5560 Physcomitrium patens HOM05D004734 ORTHO05D006019 1.8e-78 298.1 744 28.2
Psat5g176200 Pisum sativum HOM05D004734 ORTHO05D006019 3.1e-78 297.4 228 65.8
unitig_8.g4608 Utricularia gibba HOM05D004734 ORTHO05D006019 5.8e-72 276.6 345 42.0
RcHm_v2.0_Chr1g0340131 Rosa chinensis HOM05D004734 ORTHO05D006019 3.1e-65 254.2 177 69.5
Zm00001eb113720 Zea mays HOM05D004734 ORTHO05D006019 1.9e-59 235.0 216 54.6
CBR_g30206 Chara braunii HOM05D004734 ORTHO05D006019 2.6e-56 224.6 752 24.3
Atru.chr12.2374 Acer truncatum HOM05D004734 ORTHO05D006019 5.8e-56 223.4 182 61.0
RcHm_v2.0_Chr1g0340141 Rosa chinensis HOM05D004734 ORTHO05D006019 2.7e-53 214.5 217 51.6
SHI10095 Sapria himalayana HOM05D004734 ORTHO05D006019 6.4e-47 193.4 241 44.8
RcHm_v2.0_Chr0c20g0500271 Rosa chinensis HOM05D004734 ORTHO05D006019 3.3e-43 181.0 237 45.1
Medtr5g084823 Medicago truncatula HOM05D004734 ORTHO05D006019 1.1e-41 176.0 183 48.6
TPR.G146 Trifolium pratense HOM05D004734 ORTHO05D006019 1.2e-40 172.6 136 64.0
HPP92_028626 Vanilla planifolia HOM05D004734 ORTHO05D006019 2.9e-39 167.9 419 32.0
HPP92_028624 Vanilla planifolia HOM05D004734 ORTHO05D006019 1.9e-38 165.2 419 31.7
RcHm_v2.0_Chr1g0340121 Rosa chinensis HOM05D004734 ORTHO05D006019 4.8e-26 124.0 106 62.3
Psat1g136480 Pisum sativum HOM05D002598 ORTHO05D014892 2.0e-24 118.6 84 71.4
Ca_06065_v3 Cicer arietinum L. HOM05D004734 ORTHO05D001394 2.7e-21 108.2 97 59.8
SMO278G0012 Selaginella moellendorffii HOM05D004734 ORTHO05D006019 1.3e-20 105.9 138 41.3
Ca_31316_v3 Cicer arietinum L. HOM05D004734 ORTHO05D006019 2.3e-20 105.1 90 62.2
HPP92_028625 Vanilla planifolia HOM05D004734 ORTHO05D006019 3.4e-16 91.3 76 60.5
HPP92_000155 Vanilla planifolia HOM05D004734 ORTHO05D006019 2.2e-15 88.6 215 29.3
FvH4_1g12421 Fragaria vesca HOM05D058264 ORTHO05D029456 1.4e-14 85.9 112 46.4
HPP92_028623 Vanilla planifolia HOM05D004734 ORTHO05D006019 4.2e-14 84.3 69 60.9
CBR_g3444 Chara braunii HOM05D000019 ORTHO05D000353 1.6e-10 72.4 87 39.1
FvH4_3g20454 Fragaria vesca HOM05D004734 ORTHO05D196162 1.4e-06 59.3 80 45.0
PRCOL_00004220 Prasinoderma coloniale HOM05D004734 ORTHO05D006019 1.9e-06 58.9 450 20.9
SHI10093 Sapria himalayana HOM05D004734 ORTHO05D006019 9.4e-06 56.6 70 42.9


User provided reference genes

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