Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G32200 Arabidopsis thaliana HOM05D002385 ORTHO05D002245 1.9e-56 222.2 110 100.0
AL4G27560 Arabidopsis lyrata HOM05D002385 ORTHO05D002245 1.5e-32 142.9 76 92.1
AT2G32210 Arabidopsis thaliana HOM05D002385 ORTHO05D002245 4.9e-28 127.9 73 86.3
BcaB02g10483 Brassica carinata HOM05D002385 ORTHO05D002245 6.4e-28 127.5 73 84.9
A05p12990 Brassica napus HOM05D002385 ORTHO05D002245 6.4e-28 127.5 73 84.9
BraA05t20239Z Brassica rapa HOM05D002385 ORTHO05D002245 6.4e-28 127.5 73 84.9
AL4G27570 Arabidopsis lyrata HOM05D002385 ORTHO05D002245 8.3e-28 127.1 73 86.3
Sp4g14570 Schrenkiella parvula HOM05D002385 ORTHO05D002245 1.9e-27 125.9 73 83.6
AL4G27550 Arabidopsis lyrata HOM05D002385 ORTHO05D002245 2.4e-27 125.6 73 83.6
BcaC02g11342 Brassica carinata HOM05D002385 ORTHO05D002245 2.4e-27 125.6 73 83.6
C04p17420 Brassica napus HOM05D002385 ORTHO05D002245 2.4e-27 125.6 73 83.6
CARHR125980 Cardamine hirsuta HOM05D002385 ORTHO05D002245 1.2e-26 123.2 75 85.3
Sp4g14580 Schrenkiella parvula HOM05D002385 ORTHO05D002245 1.2e-26 123.2 73 82.2
Carub.0004s1351 Capsella rubella HOM05D002385 ORTHO05D002245 5.1e-25 117.9 74 81.1
Carub.0004s1352 Capsella rubella HOM05D002385 ORTHO05D002245 6.6e-25 117.5 80 77.5
BcaC02g07945 Brassica carinata HOM05D002385 ORTHO05D002245 2.5e-24 115.5 73 76.7
BcaB06g28585 Brassica carinata HOM05D002385 ORTHO05D002245 5.6e-24 114.4 73 76.7
BraA04t17993Z Brassica rapa HOM05D002385 ORTHO05D002245 5.6e-24 114.4 87 65.5
C04p61680 Brassica napus HOM05D002385 ORTHO05D002245 1.6e-23 112.8 73 75.3
AT2G32190 Arabidopsis thaliana HOM05D002385 ORTHO05D002245 4.9e-20 101.3 65 78.5
THA.LOC109116124 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 2.4e-19 99.0 75 68.0
THA.LOC104826161 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 5.4e-19 97.8 75 70.7
Aa31LG5G4320 Aethionema arabicum HOM05D002385 ORTHO05D002245 3.5e-18 95.1 75 66.7
A04p24750 Brassica napus HOM05D002385 ORTHO05D002245 5.1e-17 91.3 59 76.3
Carub.0001s0465 Capsella rubella HOM05D002385 ORTHO05D002245 8.7e-17 90.5 75 65.3
CARHR004830 Cardamine hirsuta HOM05D002385 ORTHO05D002245 7.3e-16 87.4 75 62.7
BraA10t42676Z Brassica rapa HOM05D002385 ORTHO05D002245 4.7e-15 84.7 75 62.7
BolC5t29144H Brassica oleracea HOM05D002385 ORTHO05D002245 8.1e-15 84.0 75 62.7
C05p03670 Brassica napus HOM05D002385 ORTHO05D002245 1.4e-14 83.2 75 62.7
Thhalv10009262m.g Eutrema salsugineum HOM05D002385 ORTHO05D002245 2.4e-14 82.4 76 61.8
Sp1g04210 Schrenkiella parvula HOM05D002385 ORTHO05D002245 2.2e-12 75.9 75 54.7
TWI60G1403 Tripterygium wilfordii HOM05D002385 ORTHO05D002245 8.4e-12 73.9 76 56.6
AT1G05340 Arabidopsis thaliana HOM05D002385 ORTHO05D002245 1.9e-11 72.8 75 57.3
Cpa.g.sc7.104 Carica papaya HOM05D002385 ORTHO05D002245 2.4e-11 72.4 62 64.5
AL1G15140 Arabidopsis lyrata HOM05D002385 ORTHO05D002245 5.4e-11 71.2 75 56.0
A10p04050 Brassica napus HOM05D002385 ORTHO05D002245 1.2e-10 70.1 75 53.3
Oeu056976.2 Olea europaea HOM05D002385 ORTHO05D002245 1.6e-10 69.7 83 49.4
Potri.016G019201 Populus trichocarpa HOM05D002385 ORTHO05D002245 2.1e-10 69.3 73 57.5
Aa31LG1G19350 Aethionema arabicum HOM05D002385 ORTHO05D002245 7.8e-10 67.4 61 63.9
PGR031G2469 Punica granatum HOM05D002385 ORTHO05D002245 2.3e-09 65.9 78 55.1
C05p41120 Brassica napus HOM05D002385 ORTHO05D002245 3.0e-09 65.5 57 59.6
C09p55310 Brassica napus HOM05D002385 ORTHO05D002245 3.0e-09 65.5 57 59.6
C09p55320 Brassica napus HOM05D002385 ORTHO05D002245 3.0e-09 65.5 57 59.6
BolC5t32855H Brassica oleracea HOM05D002385 ORTHO05D002245 3.0e-09 65.5 57 59.6
BolC9t58392H Brassica oleracea HOM05D002385 ORTHO05D002245 3.0e-09 65.5 57 59.6
BolC9t58394H Brassica oleracea HOM05D002385 ORTHO05D002245 3.0e-09 65.5 57 59.6
THA.LOC104822278 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 5.1e-09 64.7 70 50.0
TAR626G0681 Trochodendron aralioides HOM05D002385 ORTHO05D002245 1.1e-08 63.5 86 47.7
Eucgr.A00896 Eucalyptus grandis HOM05D002385 ORTHO05D002245 1.5e-08 63.2 76 52.6
Eucgr.A00898 Eucalyptus grandis HOM05D002385 ORTHO05D002245 3.3e-08 62.0 76 52.6
Eucgr.A00897 Eucalyptus grandis HOM05D002385 ORTHO05D002245 4.3e-08 61.6 78 51.3
CiPaw.03G113600 Carya illinoinensis HOM05D002385 ORTHO05D002245 5.6e-08 61.2 66 56.1
CANSAT64G2629 Cannabis sativa HOM05D002385 ORTHO05D002245 7.3e-08 60.8 94 44.7
GSVIVG01015779001 Vitis vinifera HOM05D002385 ORTHO05D002245 1.3e-07 60.1 96 45.8
Eucgr.A00899 Eucalyptus grandis HOM05D002385 ORTHO05D002245 2.1e-07 59.3 76 52.6
Peaxi162Scf00322g00010 Petunia axillaris HOM05D002385 ORTHO05D002245 2.8e-07 58.9 78 48.7
GSVIVG01015781001 Vitis vinifera HOM05D002385 ORTHO05D002245 2.8e-07 58.9 72 51.4
GSVIVG01015789001 Vitis vinifera HOM05D002385 ORTHO05D002245 2.8e-07 58.9 72 51.4
AL3G36500 Arabidopsis lyrata HOM05D002385 ORTHO05D002245 4.8e-07 58.2 75 48.0
COL.COLO4_07164 Corchorus olitorius HOM05D002385 ORTHO05D002245 6.2e-07 57.8 75 48.0
Sp3g20030 Schrenkiella parvula HOM05D002385 ORTHO05D002245 6.2e-07 57.8 75 49.3
Carub.0003s2241 Capsella rubella HOM05D002385 ORTHO05D002245 8.1e-07 57.4 75 48.0
Thecc.01G172200 Theobroma cacao HOM05D002385 ORTHO05D002245 8.1e-07 57.4 78 48.7
AT3G22240 Arabidopsis thaliana HOM05D002385 ORTHO05D002245 1.4e-06 56.6 75 48.0
Duzib133G0918 Durio zibethinus HOM05D002385 ORTHO05D002245 1.8e-06 56.2 79 46.8
Manes.09G073500 Manihot esculenta HOM05D002385 ORTHO05D002245 1.8e-06 56.2 71 52.1
QL04p061416 Quercus lobata HOM05D002385 ORTHO05D002245 1.8e-06 56.2 65 52.3
Dinv02957 Davidia involucrata HOM05D002385 ORTHO05D002245 2.4e-06 55.8 77 46.8
CAN.G1202.1 Capsicum annuum HOM05D002385 ORTHO05D002245 3.1e-06 55.5 75 49.3
Cfa023028 Carpinus fangiana HOM05D002385 ORTHO05D002245 3.1e-06 55.5 68 54.4
BolC1t05607H Brassica oleracea HOM05D002385 ORTHO05D002245 4.0e-06 55.1 57 50.9
QL04p061381 Quercus lobata HOM05D002385 ORTHO05D002245 4.0e-06 55.1 72 48.6
QL04p061407 Quercus lobata HOM05D002385 ORTHO05D002245 4.0e-06 55.1 72 47.2
ClCG11G016780 Citrullus lanatus HOM05D002385 ORTHO05D002245 5.3e-06 54.7 73 46.6
Thhalv10021881m.g Eutrema salsugineum HOM05D002385 ORTHO05D002245 5.3e-06 54.7 75 49.3
Manes.11G006500 Manihot esculenta HOM05D002385 ORTHO05D002245 5.3e-06 54.7 95 36.8
Dinv18438 Davidia involucrata HOM05D002385 ORTHO05D002245 6.9e-06 54.3 89 43.8
ECA240G4719 Erigeron canadensis HOM05D002385 ORTHO05D002245 6.9e-06 54.3 73 46.6
HanXRQChr11g0335361 Helianthus annuus HOM05D002385 ORTHO05D002245 6.9e-06 54.3 75 44.0
Lj6g0002718 Lotus japonicus HOM05D002385 ORTHO05D002245 6.9e-06 54.3 64 50.0
Actinidia11006 Actinidia chinensis HOM05D002385 ORTHO05D002245 9.0e-06 53.9 80 42.5
BolC9t58393H Brassica oleracea HOM05D002385 ORTHO05D033827 9.0e-06 53.9 57 52.6
CiPaw.11G059900 Carya illinoinensis HOM05D002385 ORTHO05D002245 9.0e-06 53.9 99 40.4
Gohir.D07G190900 Gossypium hirsutum HOM05D002385 ORTHO05D002245 9.0e-06 53.9 80 47.5
Gorai.001G213300 Gossypium raimondii HOM05D002385 ORTHO05D002245 9.0e-06 53.9 80 47.5


User provided reference genes

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