Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G31955 Arabidopsis thaliana HOM05D006202 ORTHO05D008227 3.7e-227 791.2 391 100.0
AL4G27290 Arabidopsis lyrata HOM05D006202 ORTHO05D008227 6.2e-219 763.8 391 96.2
Carub.0004s1327 Capsella rubella HOM05D006202 ORTHO05D008227 6.9e-210 733.8 391 93.9
Sp4g14320 Schrenkiella parvula HOM05D006202 ORTHO05D008227 1.1e-202 709.9 391 90.8
Aa31LG5G5070 Aethionema arabicum HOM05D006202 ORTHO05D008227 2.5e-199 698.7 391 87.2
Thhalv10016791m.g Eutrema salsugineum HOM05D006202 ORTHO05D008227 2.1e-198 695.7 392 90.1
BcaC01g05926 Brassica carinata HOM05D006202 ORTHO05D008227 4.5e-193 677.9 391 85.9
BraA03t11059Z Brassica rapa HOM05D006202 ORTHO05D008227 1.0e-192 676.8 391 85.9
BolC3t14483H Brassica oleracea HOM05D006202 ORTHO05D008227 4.2e-191 671.4 392 85.5
THA.LOC104815880 Tarenaya hassleriana HOM05D006202 ORTHO05D008227 5.7e-188 661.0 398 82.7
QL04p001552 Quercus lobata HOM05D006202 ORTHO05D008227 5.4e-178 627.9 399 75.9
Haze_03268 Corylus avellana HOM05D006202 ORTHO05D008227 1.0e-176 623.6 399 75.4
Atru.chr11.2704 Acer truncatum HOM05D006202 ORTHO05D008227 2.9e-176 622.1 391 76.5
Ciclev10031726m.g Citrus clementina HOM05D006202 ORTHO05D008227 2.9e-176 622.1 401 76.1
A03p17940 Brassica napus HOM05D000200 ORTHO05D000262 3.8e-176 621.7 368 84.2
Manes.10G152100 Manihot esculenta HOM05D006202 ORTHO05D008227 6.5e-176 620.9 395 77.2
Lj3g0005275 Lotus japonicus HOM05D006202 ORTHO05D008227 2.5e-175 619.0 400 76.0
TWI73G0821 Tripterygium wilfordii HOM05D006202 ORTHO05D008227 7.2e-175 617.5 399 75.7
GSVIVG01001357001 Vitis vinifera HOM05D006202 ORTHO05D008227 2.1e-174 615.9 423 73.3
C03p21020 Brassica napus HOM05D000200 ORTHO05D000262 2.7e-174 615.5 368 83.2
Prupe.1G561800 Prunus persica HOM05D006202 ORTHO05D008227 2.7e-174 615.5 400 75.2
Lalb_Chr01g0015151 Lupinus albus HOM05D006202 ORTHO05D008227 6.1e-174 614.4 400 74.2
CiPaw.02G012300 Carya illinoinensis HOM05D006202 ORTHO05D008227 1.4e-173 613.2 387 76.5
Cfa010710 Carpinus fangiana HOM05D006202 ORTHO05D008227 4.0e-173 611.7 350 81.4
Cpa.g.sc189.4 Carica papaya HOM05D006202 ORTHO05D008227 8.8e-173 610.5 380 78.9
Glyma.15G268400 Glycine max HOM05D006202 ORTHO05D008227 1.2e-172 610.1 401 74.3
Dinv43939 Davidia involucrata HOM05D006202 ORTHO05D008227 2.0e-172 609.4 400 74.5
PSO384G0467 Papaver somniferum HOM05D006202 ORTHO05D008227 2.0e-172 609.4 405 74.6
Glyma.08G157800 Glycine max HOM05D006202 ORTHO05D008227 4.4e-172 608.2 401 73.6
MBI04_g33961_MAGBIO Magnolia biondii HOM05D006202 ORTHO05D008227 4.4e-172 608.2 410 74.6
Nitab4.5_0000468g0040 Nicotiana tabacum HOM05D006202 ORTHO05D008227 5.7e-172 607.8 384 77.3
Nitab4.5_0010722g0010 Nicotiana tabacum HOM05D006202 ORTHO05D008227 2.2e-171 605.9 384 77.1
Potri.009G024100 Populus trichocarpa HOM05D006202 ORTHO05D008227 2.2e-171 605.9 400 74.8
TPR.G16148 Trifolium pratense HOM05D006202 ORTHO05D008227 2.8e-171 605.5 400 74.0
RcHm_v2.0_Chr1g0313251 Rosa chinensis HOM05D006202 ORTHO05D008227 3.7e-171 605.1 396 76.3
TAR369G0651 Trochodendron aralioides HOM05D006202 ORTHO05D008227 8.3e-171 604.0 408 73.3
CSS0029964 Camellia sinensis var. sinensis HOM05D006202 ORTHO05D008227 1.4e-170 603.2 408 72.3
Oeu060701.1 Olea europaea HOM05D006202 ORTHO05D008227 1.8e-170 602.8 393 75.8
Migut.B01400 Erythranthe guttata HOM05D006202 ORTHO05D008227 2.4e-170 602.4 393 76.1
Migut.I00539 Erythranthe guttata HOM05D006202 ORTHO05D008227 3.1e-170 602.1 399 75.2
MD02G1319400 Malus domestica HOM05D006202 ORTHO05D008227 5.4e-170 601.3 378 77.5
Actinidia21584 Actinidia chinensis HOM05D006202 ORTHO05D008227 7.0e-170 600.9 400 74.2
Medtr2g061710 Medicago truncatula HOM05D006202 ORTHO05D008227 9.1e-170 600.5 400 74.2
AL80U10060 Arabidopsis lyrata HOM05D006202 ORTHO05D008227 1.6e-169 599.7 391 80.1
SalBow5G5675 Salvia bowleyana HOM05D006202 ORTHO05D008227 2.0e-169 599.4 394 74.9
arahy.Tifrunner.gnm1.ann1.03K86Q Arachis hypogaea HOM05D006202 ORTHO05D008227 2.7e-169 599.0 351 80.6
arahy.Tifrunner.gnm1.ann1.Y9YBLC Arachis hypogaea HOM05D006202 ORTHO05D008227 2.7e-169 599.0 351 80.9
PSO339G0702 Papaver somniferum HOM05D006202 ORTHO05D008227 3.5e-169 598.6 374 77.3
Peaxi162Scf00402g00616 Petunia axillaris HOM05D006202 ORTHO05D008227 3.5e-169 598.6 355 82.0
MSTRG.28100 Avicennia marina HOM05D006202 ORTHO05D008227 4.5e-169 598.2 355 80.6
VMungo1080G0924 Vigna mungo HOM05D006202 ORTHO05D008227 4.5e-169 598.2 401 73.6
Lj9C620G10 Lonicera japonica HOM05D006202 ORTHO05D008227 5.9e-169 597.8 348 81.3
CAN.G129.48 Capsicum annuum HOM05D006202 ORTHO05D008227 7.7e-169 597.4 395 74.2
Aqoxy1G00030 Aquilegia oxysepala HOM05D006202 ORTHO05D008227 1.0e-168 597.0 337 83.4
Nn2g15679 Nelumbo nucifera HOM05D006202 ORTHO05D008227 1.7e-168 596.3 376 76.1
PGSC0003DMG401028974 Solanum tuberosum HOM05D006202 ORTHO05D008227 6.6e-168 594.3 348 81.0
SGA_v2.0_scaffold5G03106 Striga asiatica HOM05D006202 ORTHO05D008227 8.6e-168 594.0 371 78.2
Phvul.005G042000 Phaseolus vulgaris HOM05D006202 ORTHO05D008227 2.5e-167 592.4 348 80.5
Sopen01g033340 Solanum pennellii HOM05D006202 ORTHO05D008227 4.2e-167 591.7 377 75.6
vmacro21164 Vaccinium macrocarpon HOM05D006202 ORTHO05D008227 4.2e-167 591.7 353 80.5
Solyc01g073730.4 Solanum lycopersicum HOM05D006202 ORTHO05D008227 9.5e-167 590.5 375 75.2
Cc02_g26930 Coffea canephora HOM05D006202 ORTHO05D008227 1.2e-166 590.1 347 81.0
ECA234G4350 Erigeron canadensis HOM05D006202 ORTHO05D008227 1.6e-166 589.7 337 81.6
arahy.Tifrunner.gnm1.ann1.YK6119 Arachis hypogaea HOM05D006202 ORTHO05D008227 2.8e-166 589.0 351 79.8
Sc10g0005310 Simmondsia chinensis HOM05D006202 ORTHO05D008227 3.6e-166 588.6 377 75.3
Lsat_1_v5_gn_4_46560 Lactuca sativa HOM05D006202 ORTHO05D008227 4.7e-166 588.2 399 71.7
Gohir.D08G018900 Gossypium hirsutum HOM05D006202 ORTHO05D008227 6.1e-166 587.8 393 72.8
Sed0014986 Sechium edule HOM05D006202 ORTHO05D008227 1.4e-165 586.6 380 74.7
Gorai.004G013400 Gossypium raimondii HOM05D006202 ORTHO05D008227 1.8e-165 586.3 393 72.8
Rhsim03G0068600 Rhododendron simsii HOM05D006202 ORTHO05D008227 1.8e-165 586.3 379 75.5
Thecc.09G200100 Theobroma cacao HOM05D006202 ORTHO05D008227 1.8e-165 586.3 391 73.4
FAN04G1730 Fragaria x ananassa HOM05D006202 ORTHO05D008227 2.3e-165 585.9 332 83.1
COL.COLO4_07529 Corchorus olitorius HOM05D006202 ORTHO05D008227 3.0e-165 585.5 393 74.6
FvH4_5g30330 Fragaria vesca HOM05D006202 ORTHO05D008227 8.9e-165 583.9 332 83.1
Duzib168G0949 Durio zibethinus HOM05D006202 ORTHO05D008227 1.5e-164 583.2 391 73.1
Gohir.A08G008900 Gossypium hirsutum HOM05D006202 ORTHO05D008227 1.5e-164 583.2 393 72.0
HanXRQChr16g0520351 Helianthus annuus HOM05D006202 ORTHO05D008227 2.0e-164 582.8 393 72.3
ATR0605G327 Amborella trichopoda HOM05D006202 ORTHO05D008227 2.6e-164 582.4 357 76.5
FAN18G2168 Fragaria x ananassa HOM05D006202 ORTHO05D008227 3.4e-164 582.0 332 82.8
FAN08G1924 Fragaria x ananassa HOM05D006202 ORTHO05D008227 4.4e-164 581.6 332 82.5
Os02g0258900 Oryza sativa ssp. japonica HOM05D006202 ORTHO05D008227 5.7e-164 581.3 355 76.6
ClCG09G003710 Citrullus lanatus HOM05D006202 ORTHO05D008227 7.5e-164 580.9 398 71.6
FAN13G0191 Fragaria x ananassa HOM05D006202 ORTHO05D008227 9.8e-164 580.5 334 82.6
Eucgr.A00079 Eucalyptus grandis HOM05D006202 ORTHO05D008227 1.3e-163 580.1 387 73.1
Os12g0507000 Oryza sativa ssp. japonica HOM05D006202 ORTHO05D008227 1.3e-163 580.1 395 70.9
CANSAT80G0703 Cannabis sativa HOM05D006202 ORTHO05D008227 1.7e-163 579.7 407 72.0
Eucgr.A00275 Eucalyptus grandis HOM05D006202 ORTHO05D008227 2.2e-163 579.3 337 81.0
Phvul.005G041900 Phaseolus vulgaris HOM05D006202 ORTHO05D008227 1.4e-162 576.6 327 82.9
Ca_03201_v3 Cicer arietinum L. HOM05D006202 ORTHO05D008227 2.4e-162 575.9 334 80.8
Zm00001eb244230 Zea mays HOM05D006202 ORTHO05D008227 1.2e-161 573.5 364 75.0
Ah.14g085700 Amaranthus hybridus HOM05D006202 ORTHO05D008227 1.0e-160 570.5 337 79.5
DCAR_001807 Daucus carota HOM05D006202 ORTHO05D008227 1.5e-159 566.6 332 80.4
AUR62034625 Chenopodium quinoa HOM05D006202 ORTHO05D008227 2.5e-159 565.8 347 76.4
Sabra09G0015400 Salix brachista HOM05D006202 ORTHO05D008227 2.5e-159 565.8 460 64.3
AUR62036652 Chenopodium quinoa HOM05D006202 ORTHO05D008227 3.3e-159 565.5 347 76.1
CsaV3_7G031490 Cucumis sativus L. HOM05D006202 ORTHO05D008227 1.6e-158 563.1 391 70.8
unitig_749.g13486 Utricularia gibba HOM05D006202 ORTHO05D008227 2.8e-158 562.4 356 75.8
EL10Ac3g06182 Beta vulgaris HOM05D006202 ORTHO05D008227 3.2e-154 548.9 337 76.6
HPP92_023784 Vanilla planifolia HOM05D006202 ORTHO05D008227 1.2e-153 547.0 347 74.4
CARHR125690 Cardamine hirsuta HOM05D006202 ORTHO05D008227 6.4e-147 524.6 278 93.5
Pp3c5_22480 Physcomitrium patens HOM05D006202 ORTHO05D008227 4.6e-145 518.5 330 74.2
Mapoly0045s0149 Marchantia polymorpha HOM05D006202 ORTHO05D008227 5.1e-144 515.0 353 70.0
SMO361G0213 Selaginella moellendorffii HOM05D006202 ORTHO05D008227 7.3e-143 511.1 346 71.1
SEGI_40145 Sequoiadendron giganteum HOM05D006202 ORTHO05D008227 8.1e-142 507.7 363 69.1
CDE06G1615 Ceratophyllum demersum HOM05D006202 ORTHO05D008227 5.8e-140 501.5 364 68.1
CBR_g36677 Chara braunii HOM05D006202 ORTHO05D008227 3.2e-138 495.7 346 67.1
Actinidia15848 Actinidia chinensis HOM05D006202 ORTHO05D008227 9.2e-138 494.2 394 64.2
Potri.001G230604 Populus trichocarpa HOM05D006202 ORTHO05D008227 2.4e-130 469.5 399 62.4
arahy.Tifrunner.gnm1.ann1.JS3HL2 Arachis hypogaea HOM05D006202 ORTHO05D008227 9.3e-130 467.6 351 66.7
MCO15G349 Micromonas commoda HOM05D006202 ORTHO05D008227 3.1e-125 452.6 329 64.7
Cre13.g602901 Chlamydomonas reinhardtii HOM05D006202 ORTHO05D008227 9.9e-116 421.0 376 57.7
TAR369G1105 Trochodendron aralioides HOM05D006202 ORTHO05D008227 9.6e-111 404.4 295 68.1
PRCOL_00002201 Prasinoderma coloniale HOM05D006202 ORTHO05D008227 9.0e-109 397.9 328 57.9
MELO3C023505.2 Cucumis melo HOM05D006202 ORTHO05D008227 3.2e-106 389.4 288 67.7
Hund12940 Selenicereus undatus HOM05D006202 ORTHO05D008227 5.5e-106 388.7 249 73.9
Psat1g128920 Pisum sativum HOM05D006202 ORTHO05D008227 1.6e-105 387.1 284 66.5
Pp3c6_6420 Physcomitrium patens HOM05D006202 ORTHO05D008227 1.8e-104 383.6 327 59.0
Cfa022704 Carpinus fangiana HOM05D006202 ORTHO05D008227 2.5e-98 363.2 371 50.1
Haze_27006 Corylus avellana HOM05D006202 ORTHO05D008699 8.2e-70 268.5 287 46.7
SHI12251 Sapria himalayana HOM05D006202 ORTHO05D008227 2.7e-65 253.4 210 61.0
SHI12244 Sapria himalayana HOM05D006202 ORTHO05D008227 1.2e-63 248.1 165 72.7
AagrBONN_evm.TU.Sc2ySwM_344.4902 Anthoceros agrestis HOM05D006202 ORTHO05D008227 1.6e-60 237.7 183 63.4
SHI12245 Sapria himalayana HOM05D006202 ORTHO05D008227 8.0e-49 198.7 175 57.7
ATR0605G108 Amborella trichopoda HOM05D006202 ORTHO05D008227 1.8e-45 187.6 131 67.9
A05p13580 Brassica napus HOM05D006202 ORTHO05D033532 2.6e-15 87.4 88 53.4
BraA05t20295Z Brassica rapa HOM05D006202 ORTHO05D033532 2.6e-15 87.4 88 53.4
SHI34064 Sapria himalayana HOM05D006202 ORTHO05D367267 7.1e-13 79.3 164 34.1
TAR623G0116 Trochodendron aralioides HOM05D006202 ORTHO05D414173 3.6e-09 67.0 35 80.0
BcaB05g23580 Brassica carinata HOM05D000207 ORTHO05D091031 3.8e-06 57.0 68 51.5


User provided reference genes

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