Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G31945 Arabidopsis thaliana HOM05D004722 ORTHO05D005453 5.4e-31 137.5 74 100.0
Carub.0004s1325 Capsella rubella HOM05D004722 ORTHO05D005453 5.6e-28 127.5 74 91.9
AL4G27260 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 7.3e-28 127.1 74 90.5
BcaC02g11308 Brassica carinata HOM05D004722 ORTHO05D005453 7.5e-25 117.1 74 83.8
C04p17690 Brassica napus HOM05D004722 ORTHO05D005453 7.5e-25 117.1 74 83.8
BolC4t23317H Brassica oleracea HOM05D004722 ORTHO05D005453 7.5e-25 117.1 74 83.8
A05p13590 Brassica napus HOM05D004722 ORTHO05D005453 2.9e-24 115.2 74 82.4
BraA05t20296Z Brassica rapa HOM05D004722 ORTHO05D005453 2.9e-24 115.2 74 82.4
Thhalv10017532m.g Eutrema salsugineum HOM05D004722 ORTHO05D005453 2.9e-24 115.2 74 79.7
AL80U10030 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 1.9e-23 112.5 67 89.6
Sp4g14310 Schrenkiella parvula HOM05D004722 ORTHO05D005453 5.4e-23 110.9 74 79.7
Aa31LG1G19080 Aethionema arabicum HOM05D004722 ORTHO05D005453 1.8e-18 95.9 73 68.5
AT1G05575 Arabidopsis thaliana HOM05D004722 ORTHO05D005453 2.3e-18 95.5 73 68.5
AL1G15450 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 5.2e-18 94.4 66 74.2
BolC5t29171H Brassica oleracea HOM05D004722 ORTHO05D005453 9.9e-17 90.1 73 67.1
Carub.0001s0489 Capsella rubella HOM05D004722 ORTHO05D005453 2.9e-16 88.6 73 65.8
A10p04290 Brassica napus HOM05D004722 ORTHO05D005453 3.7e-16 88.2 73 64.4
BraA10t42697Z Brassica rapa HOM05D004722 ORTHO05D005453 3.7e-16 88.2 73 64.4
CARHR005060 Cardamine hirsuta HOM05D004722 ORTHO05D005453 3.2e-15 85.1 66 69.7
BcaB02g06840 Brassica carinata HOM05D004722 ORTHO05D005453 4.1e-15 84.7 66 68.2
BraA10t42701Z Brassica rapa HOM05D000875 ORTHO05D000684 7.1e-15 84.0 66 68.2
Potri.009G024300 Populus trichocarpa HOM05D004722 ORTHO05D005453 7.1e-15 84.0 74 59.5
Prupe.2G002500 Prunus persica HOM05D004722 ORTHO05D005453 1.2e-14 83.2 74 59.5
TWI60G0560 Tripterygium wilfordii HOM05D004722 ORTHO05D005453 2.7e-14 82.0 73 60.3
FAN01G1424 Fragaria x ananassa HOM05D000082 ORTHO05D005453 3.5e-14 81.6 73 58.9
BcaC05g24363 Brassica carinata HOM05D004722 ORTHO05D005453 4.6e-14 81.3 73 63.0
Manes.10G152300 Manihot esculenta HOM05D004722 ORTHO05D005453 7.8e-14 80.5 72 59.7
RcHm_v2.0_Chr1g0313231 Rosa chinensis HOM05D004722 ORTHO05D005453 7.8e-14 80.5 73 58.9
Atru.chr11.2706 Acer truncatum HOM05D004722 ORTHO05D005453 1.3e-13 79.7 73 58.9
Sabra16G0138300 Salix brachista HOM05D004722 ORTHO05D005453 2.3e-13 79.0 74 56.8
CANSAT11G0834 Cannabis sativa HOM05D004722 ORTHO05D005453 5.1e-13 77.8 67 62.7
Potri.001G230900 Populus trichocarpa HOM05D004722 ORTHO05D005453 5.1e-13 77.8 74 54.1
THA.LOC104800946 Tarenaya hassleriana HOM05D004722 ORTHO05D005453 5.1e-13 77.8 66 68.2
CiPaw.13G035000 Carya illinoinensis HOM05D004722 ORTHO05D005453 8.6e-13 77.0 73 58.9
MD02G1319500 Malus domestica HOM05D004722 ORTHO05D005453 8.6e-13 77.0 74 56.8
Peaxi162Scf00245g00096 Petunia axillaris HOM05D004722 ORTHO05D005453 8.6e-13 77.0 67 64.2
Sabra09G0015700 Salix brachista HOM05D004722 ORTHO05D005453 1.5e-12 76.3 74 55.4
PGR102G1407 Punica granatum HOM05D004722 ORTHO05D005453 1.9e-12 75.9 68 61.8
Sed0000285 Sechium edule HOM05D004722 ORTHO05D005453 1.9e-12 75.9 73 57.5
MD00G1055400 Malus domestica HOM05D004722 ORTHO05D005453 2.5e-12 75.5 67 61.2
SalBow4G0755 Salvia bowleyana HOM05D004722 ORTHO05D005453 2.5e-12 75.5 73 58.9
Medtr2g061780 Medicago truncatula HOM05D004722 ORTHO05D005453 3.3e-12 75.1 73 58.9
Cc02_g26900 Coffea canephora HOM05D004722 ORTHO05D005453 7.3e-12 73.9 70 58.6
Haze_03270 Corylus avellana HOM05D004722 ORTHO05D005453 7.3e-12 73.9 67 62.7
Sopen01g033290 Solanum pennellii HOM05D004722 ORTHO05D005453 7.3e-12 73.9 66 63.6
PGSC0003DMG400028984 Solanum tuberosum HOM05D004722 ORTHO05D005453 7.3e-12 73.9 66 63.6
Nitab4.5_0000468g0090 Nicotiana tabacum HOM05D004722 ORTHO05D005453 9.6e-12 73.6 66 60.6
Solyc01g073720.2 Solanum lycopersicum HOM05D004722 ORTHO05D005453 9.6e-12 73.6 66 62.1
PGSC0003DMG400028988 Solanum tuberosum HOM05D004722 ORTHO05D005453 9.6e-12 73.6 67 61.2
TPR.G16145 Trifolium pratense HOM05D004722 ORTHO05D005453 9.6e-12 73.6 73 58.9
TAR633G0462 Trochodendron aralioides HOM05D004722 ORTHO05D005453 9.6e-12 73.6 72 54.2
Hma1.2p1_1373F.1_g278710 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 1.2e-11 73.2 66 62.1
Hma1.2p1_2663F.1_g326415 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 1.2e-11 73.2 66 62.1
Ciclev10033110m.g Citrus clementina HOM05D004722 ORTHO05D005453 1.6e-11 72.8 67 61.2
CSS0017159 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 2.1e-11 72.4 74 55.4
Phvul.005G042200 Phaseolus vulgaris HOM05D004722 ORTHO05D005453 2.1e-11 72.4 72 56.9
Actinidia05843 Actinidia chinensis HOM05D004722 ORTHO05D005453 2.8e-11 72.0 63 66.7
arahy.Tifrunner.gnm1.ann1.3B9L35 Arachis hypogaea HOM05D004722 ORTHO05D005453 2.8e-11 72.0 73 56.2
Psat1g129080 Pisum sativum HOM05D004722 ORTHO05D005453 2.8e-11 72.0 73 57.5
Zm00001eb193270 Zea mays HOM05D004722 ORTHO05D005453 2.8e-11 72.0 65 64.6
Zm00001eb373570 Zea mays HOM05D004722 ORTHO05D005453 2.8e-11 72.0 73 57.5
Aqoxy2G00098 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 3.6e-11 71.6 73 54.8
Aqoxy3G01856 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 3.6e-11 71.6 73 54.8
CAN.G129.50 Capsicum annuum HOM05D004722 ORTHO05D005453 3.6e-11 71.6 66 62.1
Cc02_g26920 Coffea canephora HOM05D004722 ORTHO05D005453 3.6e-11 71.6 70 55.7
GSVIVG01025254001 Vitis vinifera HOM05D004722 ORTHO05D005453 3.6e-11 71.6 74 54.1
Cpa.g.sc189.2 Carica papaya HOM05D004722 ORTHO05D005453 4.7e-11 71.2 71 57.7
ECA236G3701 Erigeron canadensis HOM05D004722 ORTHO05D005453 4.7e-11 71.2 67 59.7
Nn2g15722 Nelumbo nucifera HOM05D004722 ORTHO05D005453 4.7e-11 71.2 71 60.6
MELO3C023928.2 Cucumis melo HOM05D004722 ORTHO05D005453 6.2e-11 70.9 68 57.4
TAR636G1609 Trochodendron aralioides HOM05D004722 ORTHO05D005453 6.2e-11 70.9 72 55.6
CSS0018564 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 8.1e-11 70.5 72 55.6
Glyma.08G158100 Glycine max HOM05D004722 ORTHO05D005453 8.1e-11 70.5 72 55.6
Thecc.09G215900 Theobroma cacao HOM05D004722 ORTHO05D005453 8.1e-11 70.5 67 58.2
CSS0019299 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 1.1e-10 70.1 72 55.6
Ca_03203_v3 Cicer arietinum L. HOM05D004722 ORTHO05D005453 1.1e-10 70.1 73 57.5
Hma1.2p1_0541F.1_g174840 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 1.1e-10 70.1 67 59.7
Rhsim13G0228000 Rhododendron simsii HOM05D004722 ORTHO05D005453 1.1e-10 70.1 71 56.3
SalBow4G0008 Salvia bowleyana HOM05D004722 ORTHO05D005453 1.1e-10 70.1 68 58.8
DCAR_029591 Daucus carota HOM05D004722 ORTHO05D005453 1.4e-10 69.7 70 61.4
Oeu034890.1 Olea europaea HOM05D004722 ORTHO05D005453 1.4e-10 69.7 72 55.6
RhsimUnG0154700 Rhododendron simsii HOM05D004722 ORTHO05D005453 1.4e-10 69.7 71 56.3
Sed0020970 Sechium edule HOM05D004722 ORTHO05D005453 1.4e-10 69.7 73 54.8
ClCG10G012700 Citrullus lanatus HOM05D004722 ORTHO05D005453 1.8e-10 69.3 72 52.8
HanXRQChr15g0480671 Helianthus annuus HOM05D004722 ORTHO05D005453 1.8e-10 69.3 68 55.9
Lj3g0007026 Lotus japonicus HOM05D004722 ORTHO05D005453 1.8e-10 69.3 74 56.8
TAR636G0988 Trochodendron aralioides HOM05D004722 ORTHO05D005453 1.8e-10 69.3 72 54.2
Glyma.15G268200 Glycine max HOM05D004722 ORTHO05D005453 2.4e-10 68.9 72 54.2
Sopen01g033320 Solanum pennellii HOM05D004722 ORTHO05D005453 2.4e-10 68.9 67 56.7
Migut.N01655 Erythranthe guttata HOM05D004722 ORTHO05D005453 3.1e-10 68.6 64 60.9
Lsat_1_v5_gn_1_68380 Lactuca sativa HOM05D004722 ORTHO05D005453 3.1e-10 68.6 74 51.4
vmacro13608 Vaccinium macrocarpon HOM05D004722 ORTHO05D005453 3.1e-10 68.6 73 56.2
Cfa010708 Carpinus fangiana HOM05D004722 ORTHO05D005453 4.0e-10 68.2 67 56.7
PSO339G1234 Papaver somniferum HOM05D004722 ORTHO05D005453 4.0e-10 68.2 66 56.1
Peaxi162Scf00402g00810 Petunia axillaris HOM05D004722 ORTHO05D005453 4.0e-10 68.2 63 60.3
PGR119G0776 Punica granatum HOM05D004722 ORTHO05D005453 4.0e-10 68.2 66 57.6
Rhsim07G0049700 Rhododendron simsii HOM05D004722 ORTHO05D005453 4.0e-10 68.2 72 55.6
HanXRQChr11g0344951 Helianthus annuus HOM05D004722 ORTHO05D005453 6.8e-10 67.4 67 53.7
Lalb_Chr25g0283671 Lupinus albus HOM05D004722 ORTHO05D005453 6.8e-10 67.4 73 52.1
COL.COLO4_35454 Corchorus olitorius HOM05D004722 ORTHO05D005453 8.9e-10 67.0 68 54.4
Eucgr.B03635 Eucalyptus grandis HOM05D004722 ORTHO05D005453 8.9e-10 67.0 67 55.2
Os02g0774200 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 8.9e-10 67.0 67 56.7
COL.COLO4_10444 Corchorus olitorius HOM05D004722 ORTHO05D005453 1.2e-09 66.6 74 52.7
Gohir.A05G401550 Gossypium hirsutum HOM05D004722 ORTHO05D005453 2.0e-09 65.9 65 52.3
Gohir.D04G014200 Gossypium hirsutum HOM05D004722 ORTHO05D005453 2.0e-09 65.9 65 52.3
Gorai.013G005600 Gossypium raimondii HOM05D004722 ORTHO05D005453 2.0e-09 65.9 70 55.7
Duzib114G0602 Durio zibethinus HOM05D004722 ORTHO05D005453 2.6e-09 65.5 69 53.6
Gorai.012G016800 Gossypium raimondii HOM05D004722 ORTHO05D005453 2.6e-09 65.5 65 52.3
Os06g0207200 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 3.4e-09 65.1 69 56.5
Gohir.A13G005400 Gossypium hirsutum HOM05D004722 ORTHO05D005453 4.4e-09 64.7 70 58.6
Nn7g35982 Nelumbo nucifera HOM05D004722 ORTHO05D005453 5.8e-09 64.3 61 63.9
Thecc.10G172000 Theobroma cacao HOM05D004722 ORTHO05D005453 7.6e-09 63.9 69 53.6
Sc06g0004360 Simmondsia chinensis HOM05D004722 ORTHO05D005453 9.9e-09 63.5 69 50.7
Gohir.D13G005100 Gossypium hirsutum HOM05D004722 ORTHO05D005453 2.2e-08 62.4 66 56.1
Oeu032785.1 Olea europaea HOM05D004722 ORTHO05D005453 2.9e-08 62.0 73 49.3
Potri.003G215300 Populus trichocarpa HOM05D004722 ORTHO05D005453 2.9e-08 62.0 71 53.5
HanXRQChr01g0021201 Helianthus annuus HOM05D004722 ORTHO05D005453 3.8e-08 61.6 62 51.6
Prupe.6G012500 Prunus persica HOM05D004722 ORTHO05D005453 3.8e-08 61.6 65 53.8
Nitab4.5_0009236g0010 Nicotiana tabacum HOM05D004722 ORTHO05D005453 4.9e-08 61.2 68 54.4
CSS0019909 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 6.4e-08 60.8 67 53.7
MD11G1015000 Malus domestica HOM05D004722 ORTHO05D005453 6.4e-08 60.8 58 58.6
Eucgr.B02611 Eucalyptus grandis HOM05D004722 ORTHO05D005453 8.4e-08 60.5 65 55.4
Atru.chr3.2177 Acer truncatum HOM05D004722 ORTHO05D005453 1.4e-07 59.7 53 64.2
MD03G1011900 Malus domestica HOM05D004722 ORTHO05D005453 1.4e-07 59.7 56 60.7
Atru.chr3.2176 Acer truncatum HOM05D004722 ORTHO05D005453 1.9e-07 59.3 53 60.4
Lalb_Chr01g0014951 Lupinus albus HOM05D004722 ORTHO05D005453 3.2e-07 58.5 73 49.3
DCAR_023306 Daucus carota HOM05D004722 ORTHO05D005453 4.2e-07 58.2 66 50.0
Potri.001G010600 Populus trichocarpa HOM05D004722 ORTHO05D005453 7.1e-07 57.4 74 45.9
Zm00001eb100700 Zea mays HOM05D004722 ORTHO05D005453 7.1e-07 57.4 64 53.1
A10p04340 Brassica napus HOM05D000875 ORTHO05D000684 9.3e-07 57.0 42 64.3
DCAR_027044 Daucus carota HOM05D004722 ORTHO05D005453 9.3e-07 57.0 65 49.2
Os09g0446700 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 9.3e-07 57.0 65 56.9
Ciclev10017204m.g Citrus clementina HOM05D004722 ORTHO05D005453 1.2e-06 56.6 71 49.3
DCAR_027045 Daucus carota HOM05D004722 ORTHO05D005453 1.6e-06 56.2 66 47.0
ClCG09G003700 Citrullus lanatus HOM05D004722 ORTHO05D005453 2.7e-06 55.5 65 52.3
Zm00001eb100710 Zea mays HOM05D004722 ORTHO05D005453 4.6e-06 54.7 64 51.6
MBI19_g17416_MAGBIO Magnolia biondii HOM05D004722 ORTHO05D005453 6.0e-06 54.3 67 49.3
HPP92_023476 Vanilla planifolia HOM05D004722 ORTHO05D005453 7.8e-06 53.9 67 47.8


User provided reference genes

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