Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G31725 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 8.3e-79 297.0 150 100.0
AL4G26980 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 5.9e-77 290.8 150 96.7
C04p18050 Brassica napus HOM05D003922 ORTHO05D004492 1.5e-75 286.2 150 95.3
BolC4t23353H Brassica oleracea HOM05D003922 ORTHO05D004492 1.5e-75 286.2 150 95.3
BcaB02g10413 Brassica carinata HOM05D003922 ORTHO05D004492 1.9e-75 285.8 150 95.3
Thhalv10017374m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 1.9e-75 285.8 150 94.0
Sp4g14200 Schrenkiella parvula HOM05D003922 ORTHO05D004492 5.6e-75 284.3 150 94.0
BcaC02g11282 Brassica carinata HOM05D003922 ORTHO05D004492 7.3e-75 283.9 150 94.7
CARHR125410 Cardamine hirsuta HOM05D003922 ORTHO05D004492 2.3e-73 278.9 149 91.3
BraA05t20315Z Brassica rapa HOM05D003922 ORTHO05D004492 8.9e-73 276.9 162 88.3
Carub.0004s1303 Capsella rubella HOM05D003922 ORTHO05D004492 2.4e-70 268.9 149 89.3
Aa31LG5G5270 Aethionema arabicum HOM05D003922 ORTHO05D004492 4.6e-69 264.6 150 84.7
THA.LOC104815872 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 1.3e-68 263.1 147 87.8
THA.LOC104800922 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 5.0e-68 261.2 147 85.7
A09p67310 Brassica napus HOM05D003922 ORTHO05D004492 7.3e-67 257.3 150 85.3
BcaC07g42112 Brassica carinata HOM05D003922 ORTHO05D004492 1.6e-66 256.1 150 84.0
Sp1g04550 Schrenkiella parvula HOM05D003922 ORTHO05D004492 6.2e-66 254.2 150 84.0
Thhalv10009017m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 1.1e-65 253.4 150 82.7
BraA09t42062Z Brassica rapa HOM05D003922 ORTHO05D004492 8.9e-65 250.4 157 81.5
BolC8t52690H Brassica oleracea HOM05D003922 ORTHO05D004492 1.7e-63 246.1 160 78.8
AL1G15640 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 2.2e-63 245.7 150 80.0
Thecc.04G164400 Theobroma cacao HOM05D003922 ORTHO05D004492 2.2e-63 245.7 147 77.6
Duzib268G1060 Durio zibethinus HOM05D003922 ORTHO05D004492 6.4e-63 244.2 150 76.0
Gohir.A09G213608 Gossypium hirsutum HOM05D003922 ORTHO05D004492 8.3e-63 243.8 147 77.6
Gohir.D09G212300 Gossypium hirsutum HOM05D003922 ORTHO05D004492 8.3e-63 243.8 147 77.6
Gorai.006G232100 Gossypium raimondii HOM05D003922 ORTHO05D004492 8.3e-63 243.8 147 77.6
AT1G05730 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 1.1e-62 243.4 150 79.3
C08p51620 Brassica napus HOM05D003922 ORTHO05D004492 3.2e-62 241.9 161 78.3
Cpa.g.sc9.377 Carica papaya HOM05D003922 ORTHO05D004492 9.2e-62 240.4 150 77.3
CARHR005250 Cardamine hirsuta HOM05D003922 ORTHO05D004492 1.6e-61 239.6 147 78.9
Manes.05G137000 Manihot esculenta HOM05D003922 ORTHO05D004492 3.5e-61 238.4 150 76.0
Ciclev10022699m.g Citrus clementina HOM05D003922 ORTHO05D004492 1.0e-60 236.9 150 74.7
GSVIVG01035132001 Vitis vinifera HOM05D003922 ORTHO05D004492 2.5e-59 232.3 150 74.0
TWI63G0384 Tripterygium wilfordii HOM05D003922 ORTHO05D004492 3.3e-59 231.9 150 72.7
Sed0023559 Sechium edule HOM05D003922 ORTHO05D004492 1.6e-58 229.6 150 73.3
PGR142G3702 Punica granatum HOM05D003922 ORTHO05D004492 2.8e-58 228.8 150 72.0
Carub.0001s0508 Capsella rubella HOM05D003922 ORTHO05D004492 4.7e-58 228.0 150 74.7
Potri.013G127400 Populus trichocarpa HOM05D003922 ORTHO05D004492 1.1e-57 226.9 146 74.7
Sabra13G0106500 Salix brachista HOM05D003922 ORTHO05D004492 1.1e-57 226.9 146 74.7
CsaV3_5G030170 Cucumis sativus L. HOM05D003922 ORTHO05D004492 3.1e-57 225.3 150 72.0
ClCG11G013550 Citrullus lanatus HOM05D003922 ORTHO05D004492 5.2e-57 224.6 150 72.0
MELO3C011855.2 Cucumis melo HOM05D003922 ORTHO05D004492 3.4e-56 221.9 150 71.3
TAR633G0046 Trochodendron aralioides HOM05D003922 ORTHO05D004492 2.2e-55 219.2 149 68.5
CSS0038398 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 4.9e-55 218.0 150 68.0
Eucgr.H00289 Eucalyptus grandis HOM05D003922 ORTHO05D004492 4.9e-55 218.0 150 70.7
Atru.chr4.1453 Acer truncatum HOM05D003922 ORTHO05D004492 6.4e-55 217.6 150 69.3
Actinidia27120 Actinidia chinensis HOM05D003922 ORTHO05D004492 6.4e-55 217.6 147 70.1
CSS0002835 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 6.4e-55 217.6 150 68.0
COL.COLO4_38113 Corchorus olitorius HOM05D003922 ORTHO05D004492 3.2e-54 215.3 135 76.3
PGSC0003DMG400016054 Solanum tuberosum HOM05D003922 ORTHO05D004492 3.2e-54 215.3 150 66.7
Cc03_g14390 Coffea canephora HOM05D003922 ORTHO05D004492 4.1e-54 214.9 150 67.3
Oeu050329.1 Olea europaea HOM05D003922 ORTHO05D004492 5.4e-54 214.5 150 68.0
DCAR_005455 Daucus carota HOM05D003922 ORTHO05D004492 9.2e-54 213.8 150 66.0
Solyc08g014300.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 1.2e-53 213.4 150 66.0
Sopen08g005210 Solanum pennellii HOM05D003922 ORTHO05D004492 1.2e-53 213.4 150 66.0
RcHm_v2.0_Chr4g0405841 Rosa chinensis HOM05D003922 ORTHO05D004492 1.6e-53 213.0 150 64.7
MD04G1037100 Malus domestica HOM05D003922 ORTHO05D004492 4.6e-53 211.5 150 66.0
Rhsim09G0008700 Rhododendron simsii HOM05D003922 ORTHO05D004492 4.6e-53 211.5 150 64.7
Sopen06g018570 Solanum pennellii HOM05D003922 ORTHO05D004492 6.0e-53 211.1 150 68.7
CSS0049854 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 1.0e-52 210.3 150 66.7
Dinv18325 Davidia involucrata HOM05D003922 ORTHO05D004492 1.0e-52 210.3 150 66.7
Duzib151G1155 Durio zibethinus HOM05D003922 ORTHO05D004492 1.3e-52 209.9 181 58.6
Cfa015673 Carpinus fangiana HOM05D003922 ORTHO05D004492 1.7e-52 209.5 150 66.7
CANSAT56G1338 Cannabis sativa HOM05D003922 ORTHO05D004492 3.0e-52 208.8 146 64.4
vmacro00688 Vaccinium macrocarpon HOM05D003922 ORTHO05D004492 3.0e-52 208.8 150 64.7
Nn2g13969 Nelumbo nucifera HOM05D003922 ORTHO05D004492 3.9e-52 208.4 147 66.7
ECA248G0756 Erigeron canadensis HOM05D003922 ORTHO05D004492 5.1e-52 208.0 148 66.2
PGSC0003DMG400016330 Solanum tuberosum HOM05D003922 ORTHO05D004492 5.1e-52 208.0 150 66.7
HanXRQChr11g0343091 Helianthus annuus HOM05D003922 ORTHO05D004492 6.6e-52 207.6 147 65.3
Lj6A217G7 Lonicera japonica HOM05D003922 ORTHO05D004492 6.6e-52 207.6 150 62.7
Lsat_1_v5_gn_1_74581 Lactuca sativa HOM05D003922 ORTHO05D004492 1.1e-51 206.8 147 63.9
QL10p056544 Quercus lobata HOM05D003922 ORTHO05D004492 1.1e-51 206.8 149 65.1
CiPaw.01G168800 Carya illinoinensis HOM05D003922 ORTHO05D004492 1.9e-51 206.1 150 66.0
PSO017G0931 Papaver somniferum HOM05D003922 ORTHO05D004492 1.9e-51 206.1 147 65.3
PSO573G0028 Papaver somniferum HOM05D003922 ORTHO05D004492 1.9e-51 206.1 147 64.6
Sc19g0002260 Simmondsia chinensis HOM05D003922 ORTHO05D004492 1.9e-51 206.1 147 66.7
Hund03208 Selenicereus undatus HOM05D003922 ORTHO05D004492 2.5e-51 205.7 147 66.0
Aqoxy2G04156 Aquilegia oxysepala HOM05D003922 ORTHO05D004492 4.3e-51 204.9 151 64.2
CAN.G759.3 Capsicum annuum HOM05D003922 ORTHO05D004492 1.2e-50 203.4 150 63.3
TPR.G16707 Trifolium pratense HOM05D003922 ORTHO05D004492 1.2e-50 203.4 147 64.6
A05p13780 Brassica napus HOM05D003922 ORTHO05D004492 2.8e-50 202.2 153 72.5
Migut.N03060 Erythranthe guttata HOM05D003922 ORTHO05D004492 2.8e-50 202.2 150 64.0
EL10Ac3g06102 Beta vulgaris HOM05D003922 ORTHO05D004492 4.7e-50 201.4 149 63.8
Glyma.06G319900 Glycine max HOM05D003922 ORTHO05D004492 4.7e-50 201.4 149 61.7
Ca_14117_v3 Cicer arietinum L. HOM05D003922 ORTHO05D004492 6.2e-50 201.1 147 63.9
FAN21G3935 Fragaria x ananassa HOM05D003922 ORTHO05D004492 6.2e-50 201.1 143 65.0
FvH4_3g34590 Fragaria vesca HOM05D003922 ORTHO05D004492 1.4e-49 199.9 143 64.3
FAN11G1624 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.4e-49 199.9 143 64.3
FAN16G1833 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.4e-49 199.9 143 64.3
FAN25G1394 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.4e-49 199.9 143 64.3
SalBow6G3114 Salvia bowleyana HOM05D003922 ORTHO05D004492 1.4e-49 199.9 143 68.5
FAN02G1921 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.8e-49 199.5 145 63.4
FAN06G3125 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.8e-49 199.5 145 63.4
Glyma.02G058200 Glycine max HOM05D003922 ORTHO05D004492 1.8e-49 199.5 149 61.7
Psat5g230680 Pisum sativum HOM05D003922 ORTHO05D004492 2.4e-49 199.1 147 63.9
Medtr3g009130 Medicago truncatula HOM05D003922 ORTHO05D004492 5.2e-49 198.0 147 62.6
Prupe.1G185700 Prunus persica HOM05D003922 ORTHO05D004492 5.2e-49 198.0 149 62.4
Lj3g0023756 Lotus japonicus HOM05D003922 ORTHO05D004492 6.9e-49 197.6 147 63.9
Glyma.04G117900 Glycine max HOM05D003922 ORTHO05D004492 9.0e-49 197.2 147 62.6
unitig_578.g16270 Utricularia gibba HOM05D003922 ORTHO05D004492 9.0e-49 197.2 142 64.1
DCAR_027517 Daucus carota HOM05D003922 ORTHO05D004492 1.2e-48 196.8 149 60.4
Lalb_Chr18g0048821 Lupinus albus HOM05D003922 ORTHO05D004492 1.2e-48 196.8 147 63.3
Os11g0256200 Oryza sativa ssp. japonica HOM05D003922 ORTHO05D004492 1.2e-48 196.8 147 60.5
Phvul.005G007000 Phaseolus vulgaris HOM05D003922 ORTHO05D004492 1.2e-48 196.8 147 61.9
MSTRG.24564 Avicennia marina HOM05D003922 ORTHO05D004492 1.5e-48 196.4 150 62.7
Peaxi162Scf00075g01329 Petunia axillaris HOM05D003922 ORTHO05D004492 2.0e-48 196.1 150 63.3
CDE09G1276 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 2.6e-48 195.7 147 63.9
AT2G43720 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 7.6e-48 194.1 144 63.9
THA.LOC104804105 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 2.2e-47 192.6 152 61.2
CAN.G1401.2 Capsicum annuum HOM05D003922 ORTHO05D004492 2.9e-47 192.2 150 62.0
Zm00001eb169120 Zea mays HOM05D003922 ORTHO05D004492 2.9e-47 192.2 139 62.6
Nitab4.5_0004700g0050 Nicotiana tabacum HOM05D003922 ORTHO05D004492 3.8e-47 191.8 170 58.2
CARHR138910 Cardamine hirsuta HOM05D003922 ORTHO05D004492 4.9e-47 191.4 144 63.2
AL4G42550 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 6.4e-47 191.0 144 63.2
SGA_v2.0_scaffold25G11004 Striga asiatica HOM05D003922 ORTHO05D004492 6.4e-47 191.0 150 58.7
VMungo1080G1004 Vigna mungo HOM05D003922 ORTHO05D004492 6.4e-47 191.0 147 60.5
MSTRG.22037 Avicennia marina HOM05D003922 ORTHO05D004492 3.2e-46 188.7 150 60.0
HPP92_023724 Vanilla planifolia HOM05D003922 ORTHO05D004492 4.2e-46 188.3 148 59.5
arahy.Tifrunner.gnm1.ann1.D9AT9V Arachis hypogaea HOM05D003922 ORTHO05D004492 9.3e-46 187.2 147 58.5
AUR62002412 Chenopodium quinoa HOM05D003922 ORTHO05D004492 2.1e-45 186.0 149 60.4
Carub.0004s2626 Capsella rubella HOM05D003922 ORTHO05D004492 2.7e-45 185.7 144 61.1
ATR0743G180 Amborella trichopoda HOM05D003922 ORTHO05D004492 4.6e-45 184.9 137 63.5
Sp4g25790 Schrenkiella parvula HOM05D003922 ORTHO05D004492 6.0e-45 184.5 144 61.1
SGA_v2.0_scaffold19G08849 Striga asiatica HOM05D003922 ORTHO05D004492 7.8e-45 184.1 161 54.7
BcaC07g42117 Brassica carinata HOM05D003922 ORTHO05D004492 1.0e-44 183.7 151 68.9
Zm00001eb169100 Zea mays HOM05D003922 ORTHO05D004492 1.7e-44 183.0 139 61.2
Oeu015712.2 Olea europaea HOM05D003922 ORTHO05D004492 3.0e-44 182.2 222 45.5
BcaC02g07156 Brassica carinata HOM05D000941 ORTHO05D004492 5.1e-44 181.4 150 57.3
BcaC07g42114 Brassica carinata HOM05D003922 ORTHO05D004492 5.1e-44 181.4 151 65.6
BolC4t28571H Brassica oleracea HOM05D003922 ORTHO05D004492 5.1e-44 181.4 150 57.3
Thhalv10001669m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 2.5e-43 179.1 142 60.6
Peaxi162Scf00579g00013 Petunia axillaris HOM05D003922 ORTHO05D004492 4.3e-43 178.3 148 61.5
BcaB06g29344 Brassica carinata HOM05D003922 ORTHO05D004492 5.6e-43 177.9 143 59.4
C04p70710 Brassica napus HOM05D003922 ORTHO05D004492 1.3e-42 176.8 151 57.0
A04p33020 Brassica napus HOM05D003922 ORTHO05D004492 1.6e-42 176.4 143 58.0
BraA04t18761Z Brassica rapa HOM05D003922 ORTHO05D004492 1.6e-42 176.4 143 58.0
CiPaw.02G099200 Carya illinoinensis HOM05D003922 ORTHO05D004492 2.4e-41 172.6 143 55.9
Lj6A207G21 Lonicera japonica HOM05D003922 ORTHO05D004492 4.5e-40 168.3 193 45.6
MBI07_g11491_MAGBIO Magnolia biondii HOM05D003922 ORTHO05D004492 1.2e-37 160.2 142 58.5
arahy.Tifrunner.gnm1.ann1.1Q5EFH Arachis hypogaea HOM05D003922 ORTHO05D004492 4.3e-35 151.8 147 50.3
Glyma.06G288100 Glycine max HOM05D003922 ORTHO05D004492 6.2e-34 147.9 129 58.1
Glyma.06G288300 Glycine max HOM05D003922 ORTHO05D004492 6.2e-34 147.9 129 58.1
Lj3P164T1 Lonicera japonica HOM05D003922 ORTHO05D004492 1.1e-33 147.1 108 61.1
Lju359P1T4 Lonicera japonica HOM05D003922 ORTHO05D004492 1.1e-33 147.1 108 61.1
Aa31LG1G25440 Aethionema arabicum HOM05D003922 ORTHO05D004492 5.3e-33 144.8 105 62.9
Haze_00850 Corylus avellana HOM05D003922 ORTHO05D004492 5.3e-33 144.8 89 76.4
CDE04G0234 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 4.5e-32 141.7 89 74.2
Solyc06g053490.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 4.5e-32 141.7 89 78.7
arahy.Tifrunner.gnm1.ann1.H4TYTD Arachis hypogaea HOM05D003922 ORTHO05D004492 7.6e-32 141.0 147 49.0
Haze_00864 Corylus avellana HOM05D003922 ORTHO05D004492 3.8e-31 138.7 103 67.0
Nitab4.5_0000013g0490 Nicotiana tabacum HOM05D003922 ORTHO05D004492 1.1e-30 137.1 89 74.2
Nitab4.5_0007474g0040 Nicotiana tabacum HOM05D003922 ORTHO05D004492 2.7e-29 132.5 133 49.6
Glyma.06G320000 Glycine max HOM05D003922 ORTHO05D004492 2.3e-28 129.4 145 45.5
Psat3g002600 Pisum sativum HOM05D003321 ORTHO05D004492 1.6e-26 123.2 82 67.1
AT1G05740 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 3.7e-26 122.1 103 59.2
Glyma.06G288000 Glycine max HOM05D003922 ORTHO05D004492 2.4e-25 119.4 144 43.1
Carub.0001s0509 Capsella rubella HOM05D003922 ORTHO05D004492 9.0e-25 117.5 91 59.3
SEGI_40113 Sequoiadendron giganteum HOM05D003922 ORTHO05D004492 4.9e-23 111.7 86 55.8
arahy.Tifrunner.gnm1.ann1.GG9VXM Arachis hypogaea HOM05D003922 ORTHO05D004492 1.4e-22 110.2 147 40.8
Pp3c22_16840 Physcomitrium patens HOM05D003922 ORTHO05D004492 7.1e-22 107.8 133 41.4
AagrBONN_evm.TU.Sc2ySwM_228.3693 Anthoceros agrestis HOM05D003922 ORTHO05D004492 1.3e-20 103.6 138 35.5
BcaB05g24674 Brassica carinata HOM05D001689 ORTHO05D004492 8.2e-18 94.4 52 84.6
Glyma.06G288200 Glycine max HOM05D003922 ORTHO05D004492 9.0e-17 90.9 144 38.2
SMO174G0123 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 3.4e-16 89.0 136 27.9
arahy.Tifrunner.gnm1.ann1.V6LTI0 Arachis hypogaea HOM05D003922 ORTHO05D004492 8.5e-15 84.3 72 54.2
BcaB05g25136 Brassica carinata HOM05D003922 ORTHO05D004492 2.5e-14 82.8 39 92.3
SMO174G0129 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 7.2e-14 81.3 139 27.3
arahy.Tifrunner.gnm1.ann1.DMY77W Arachis hypogaea HOM05D003922 ORTHO05D004492 7.9e-13 77.8 85 45.9
Lsat_1_v5_gn_3_36701 Lactuca sativa HOM05D003922 ORTHO05D004492 7.9e-13 77.8 101 36.6
SMO116G0121 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 1.1e-11 73.9 104 29.8
Mapoly0006s0297 Marchantia polymorpha HOM05D003922 ORTHO05D004492 7.4e-11 71.2 130 28.5
CBR_g3774 Chara braunii HOM05D003922 ORTHO05D004492 8.2e-10 67.8 127 26.8
CiPaw.16G066500 Carya illinoinensis HOM05D003922 ORTHO05D004492 2.0e-08 63.2 81 42.0
BcaC02g08825 Brassica carinata HOM05D003922 ORTHO05D031941 4.5e-08 62.0 49 67.3
AUR62023777 Chenopodium quinoa HOM05D003922 ORTHO05D004492 7.7e-08 61.2 46 65.2
BolC4t26594H Brassica oleracea HOM05D003922 ORTHO05D031941 1.0e-07 60.8 49 65.3
C04p50010 Brassica napus HOM05D003922 ORTHO05D031941 1.3e-07 60.5 49 65.3
Cre12.g551900 Chlamydomonas reinhardtii HOM05D003922 ORTHO05D004492 1.7e-07 60.1 133 26.3
AL1G15650 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 6.5e-07 58.2 80 42.5


User provided reference genes

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