Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G31710 Arabidopsis thaliana HOM05D005271 ORTHO05D006072 1.5e-50 202.6 106 100.0
AL4G26950 Arabidopsis lyrata HOM05D005271 ORTHO05D006072 1.7e-49 199.1 106 98.1
Thhalv10017819m.g Eutrema salsugineum HOM05D005271 ORTHO05D006072 3.1e-48 194.9 106 95.3
Carub.0004s1300 Capsella rubella HOM05D005271 ORTHO05D006072 5.4e-48 194.1 106 95.3
BcaB06g28531 Brassica carinata HOM05D005271 ORTHO05D006072 9.1e-48 193.4 106 93.4
C04p60870 Brassica napus HOM05D005271 ORTHO05D006072 9.1e-48 193.4 106 93.4
BolC4t27578H Brassica oleracea HOM05D005271 ORTHO05D006072 9.1e-48 193.4 106 93.4
BcaC01g05934 Brassica carinata HOM05D000364 ORTHO05D006072 1.2e-47 193.0 106 94.3
C03p20920 Brassica napus HOM05D000364 ORTHO05D006072 1.2e-47 193.0 106 94.3
Aa31LG5G5280 Aethionema arabicum HOM05D005271 ORTHO05D006072 1.6e-47 192.6 106 92.5
A04p24140 Brassica napus HOM05D005271 ORTHO05D006072 2.7e-47 191.8 106 92.5
BraA04t17934Z Brassica rapa HOM05D005271 ORTHO05D006072 3.5e-47 191.4 106 93.4
BraA03t11049Z Brassica rapa HOM05D000364 ORTHO05D006072 4.5e-47 191.0 106 93.4
A03p17850 Brassica napus HOM05D000364 ORTHO05D006072 1.3e-46 189.5 106 92.5
THA.LOC104800917 Tarenaya hassleriana HOM05D005271 ORTHO05D006072 1.6e-44 182.6 106 84.9
CARHR125350 Cardamine hirsuta HOM05D005271 ORTHO05D006072 2.8e-44 181.8 106 87.7
BcaB01g04025 Brassica carinata HOM05D005271 ORTHO05D006072 3.6e-44 181.4 99 92.9
THA.LOC104815870 Tarenaya hassleriana HOM05D005271 ORTHO05D006072 3.0e-43 178.3 106 83.0
C04p18180 Brassica napus HOM05D005271 ORTHO05D006072 8.8e-43 176.8 107 89.7
BolC4t23374H Brassica oleracea HOM05D005271 ORTHO05D006072 2.6e-42 175.3 106 88.7
AL1G15680 Arabidopsis lyrata HOM05D005271 ORTHO05D006072 4.4e-42 174.5 107 86.0
A05p13810 Brassica napus HOM05D005271 ORTHO05D006072 5.7e-42 174.1 104 88.5
BcaB02g10411 Brassica carinata HOM05D000896 ORTHO05D006072 9.8e-42 173.3 107 88.8
AT1G05780 Arabidopsis thaliana HOM05D005271 ORTHO05D006072 1.7e-41 172.6 107 84.1
BcaC02g11279 Brassica carinata HOM05D005271 ORTHO05D006072 2.4e-40 168.7 107 86.0
CARHR005290 Cardamine hirsuta HOM05D005271 ORTHO05D006072 2.7e-39 165.2 107 79.4
Cpa.g.sc51.137 Carica papaya HOM05D005271 ORTHO05D006072 3.7e-33 144.8 106 67.9
Manes.05G190800 Manihot esculenta HOM05D005271 ORTHO05D006072 6.4e-33 144.1 106 68.9
Duzib212G0597 Durio zibethinus HOM05D005271 ORTHO05D006072 2.0e-31 139.0 105 63.8
CiPaw.09G137400 Carya illinoinensis HOM05D005271 ORTHO05D006072 3.5e-31 138.3 106 65.1
FvH4_3g12930 Fragaria vesca HOM05D005271 ORTHO05D006072 4.6e-31 137.9 106 63.2
FAN11G1405 Fragaria x ananassa HOM05D005271 ORTHO05D006072 4.6e-31 137.9 106 63.2
FAN16G1303 Fragaria x ananassa HOM05D005271 ORTHO05D006072 5.9e-31 137.5 106 63.2
RcHm_v2.0_Chr5g0021041 Rosa chinensis HOM05D005271 ORTHO05D006072 7.8e-31 137.1 106 63.2
Thecc.04G266100 Theobroma cacao HOM05D005271 ORTHO05D006072 7.8e-31 137.1 105 62.9
FvH4_4g01060 Fragaria vesca HOM05D005271 ORTHO05D006072 1.0e-30 136.7 106 63.2
FAN12G2425 Fragaria x ananassa HOM05D005271 ORTHO05D006072 1.0e-30 136.7 106 63.2
Cfa001130 Carpinus fangiana HOM05D005271 ORTHO05D006072 1.7e-30 136.0 106 64.2
Duzib151G0973 Durio zibethinus HOM05D005271 ORTHO05D006072 1.7e-30 136.0 105 63.8
Gohir.D09G227900 Gossypium hirsutum HOM05D005271 ORTHO05D006072 3.0e-30 135.2 105 62.9
Gorai.006G250600 Gossypium raimondii HOM05D005271 ORTHO05D006072 3.0e-30 135.2 105 62.9
Lalb_Chr02g0160001 Lupinus albus HOM05D005271 ORTHO05D006072 3.0e-30 135.2 103 67.0
Lalb_Chr02g0160211 Lupinus albus HOM05D005271 ORTHO05D006072 3.0e-30 135.2 103 67.0
Ca_28197_v3 Cicer arietinum L. HOM05D005271 ORTHO05D006072 5.0e-30 134.4 103 65.0
Dinv31186 Davidia involucrata HOM05D005271 ORTHO05D006072 5.0e-30 134.4 88 75.0
FAN22G0530 Fragaria x ananassa HOM05D005271 ORTHO05D006072 5.0e-30 134.4 106 63.2
Gohir.A09G226900 Gossypium hirsutum HOM05D005271 ORTHO05D006072 5.0e-30 134.4 105 61.9
Atru.chr1.851 Acer truncatum HOM05D005271 ORTHO05D006072 6.6e-30 134.0 106 67.0
FAN21G0135 Fragaria x ananassa HOM05D005271 ORTHO05D006072 8.6e-30 133.7 104 61.5
Medtr6g017185 Medicago truncatula HOM05D005271 ORTHO05D006072 8.6e-30 133.7 103 64.1
arahy.Tifrunner.gnm1.ann1.0KQV7A Arachis hypogaea HOM05D005271 ORTHO05D006072 1.5e-29 132.9 103 63.1
arahy.Tifrunner.gnm1.ann1.31Z3CL Arachis hypogaea HOM05D005271 ORTHO05D006072 1.5e-29 132.9 103 63.1
Prupe.4G117300 Prunus persica HOM05D005271 ORTHO05D006072 1.5e-29 132.9 106 62.3
arahy.Tifrunner.gnm1.ann1.VX2J7C Arachis hypogaea HOM05D005271 ORTHO05D006072 3.3e-29 131.7 103 63.1
ECA238G4336 Erigeron canadensis HOM05D005271 ORTHO05D006072 3.3e-29 131.7 105 61.9
Manes.01G042100 Manihot esculenta HOM05D005271 ORTHO05D006072 4.3e-29 131.3 106 62.3
Potri.001G160500 Populus trichocarpa HOM05D005271 ORTHO05D006072 4.3e-29 131.3 106 59.4
PGR142G2670 Punica granatum HOM05D005271 ORTHO05D006072 4.3e-29 131.3 106 63.2
Ciclev10017270m.g Citrus clementina HOM05D005271 ORTHO05D006072 5.6e-29 131.0 106 62.3
DCAR_002456 Daucus carota HOM05D005271 ORTHO05D006072 5.6e-29 131.0 105 61.9
DCAR_002458 Daucus carota HOM05D005271 ORTHO05D006072 5.6e-29 131.0 105 61.9
CSS0040197 Camellia sinensis var. sinensis HOM05D005271 ORTHO05D006072 7.3e-29 130.6 105 61.0
arahy.Tifrunner.gnm1.ann1.5IT82G Arachis hypogaea HOM05D005271 ORTHO05D006072 1.2e-28 129.8 103 62.1
Phvul.004G017800 Phaseolus vulgaris HOM05D005271 ORTHO05D006072 1.2e-28 129.8 103 61.2
TWI15G1056 Tripterygium wilfordii HOM05D005271 ORTHO05D006072 1.6e-28 129.4 106 64.2
ClCG01G025510 Citrullus lanatus HOM05D005271 ORTHO05D006072 2.1e-28 129.0 105 60.0
Cc10_g11580 Coffea canephora HOM05D005271 ORTHO05D006072 2.1e-28 129.0 88 71.6
Psat0s5346g0120 Pisum sativum HOM05D005271 ORTHO05D006072 2.8e-28 128.6 103 60.2
Sed0007631 Sechium edule HOM05D005271 ORTHO05D006072 2.8e-28 128.6 105 62.9
CANSAT25G1004 Cannabis sativa HOM05D005271 ORTHO05D006072 3.6e-28 128.3 89 69.7
QL11p012305 Quercus lobata HOM05D005271 ORTHO05D006072 3.6e-28 128.3 92 67.4
HanXRQChr14g0428301 Helianthus annuus HOM05D005271 ORTHO05D006072 4.7e-28 127.9 105 60.0
Oeu017888.1 Olea europaea HOM05D005271 ORTHO05D006072 6.2e-28 127.5 106 58.5
Nitab4.5_0002741g0010 Nicotiana tabacum HOM05D005271 ORTHO05D006072 8.0e-28 127.1 90 65.6
arahy.Tifrunner.gnm1.ann1.FU3306 Arachis hypogaea HOM05D005271 ORTHO05D006072 1.0e-27 126.7 103 62.1
TAR627G0156 Trochodendron aralioides HOM05D005271 ORTHO05D006072 1.0e-27 126.7 93 66.7
CAN.G350.33 Capsicum annuum HOM05D005271 ORTHO05D006072 1.4e-27 126.3 90 66.7
VMungo0464G2009 Vigna mungo HOM05D005271 ORTHO05D006072 1.4e-27 126.3 103 60.2
Nn7g38328 Nelumbo nucifera HOM05D005271 ORTHO05D006072 1.8e-27 125.9 95 66.3
TAR629G0996 Trochodendron aralioides HOM05D005271 ORTHO05D006072 1.8e-27 125.9 107 60.7
MELO3C007032.2 Cucumis melo HOM05D005271 ORTHO05D006072 2.3e-27 125.6 105 60.0
Nitab4.5_0004741g0030 Nicotiana tabacum HOM05D005271 ORTHO05D006072 2.3e-27 125.6 90 65.6
TWI63G0865 Tripterygium wilfordii HOM05D005271 ORTHO05D006072 2.3e-27 125.6 91 65.9
Sabra01G0131700 Salix brachista HOM05D005271 ORTHO05D006072 3.1e-27 125.2 119 55.5
vmacro03554 Vaccinium macrocarpon HOM05D005271 ORTHO05D006072 3.1e-27 125.2 106 57.5
CsaV3_6G052780 Cucumis sativus L. HOM05D005271 ORTHO05D006072 4.0e-27 124.8 105 59.0
Glyma.13G170400 Glycine max HOM05D005271 ORTHO05D006072 4.0e-27 124.8 105 61.0
Hma1.2p1_0088F.1_g045170 Hydrangea macrophylla HOM05D005271 ORTHO05D006072 4.0e-27 124.8 107 61.7
Rhsim04G0167900 Rhododendron simsii HOM05D005271 ORTHO05D006072 5.2e-27 124.4 106 57.5
Actinidia22429 Actinidia chinensis HOM05D005271 ORTHO05D006072 6.8e-27 124.0 107 58.9
Glyma.19G010500 Glycine max HOM05D005271 ORTHO05D006072 6.8e-27 124.0 105 61.0
Lj2g0008924 Lotus japonicus HOM05D005271 ORTHO05D006072 6.8e-27 124.0 103 60.2
Oeu021212.1 Olea europaea HOM05D005271 ORTHO05D006072 6.8e-27 124.0 98 67.3
PSO541G1812 Papaver somniferum HOM05D005271 ORTHO05D006072 6.8e-27 124.0 105 58.1
PSO675G0749 Papaver somniferum HOM05D005271 ORTHO05D006072 6.8e-27 124.0 105 57.1
Aqoxy1G00251 Aquilegia oxysepala HOM05D005271 ORTHO05D006072 1.2e-26 123.2 88 67.0
PSO782G3340 Papaver somniferum HOM05D005271 ORTHO05D006072 2.6e-26 122.1 98 62.2
MD10G1227700 Malus domestica HOM05D005271 ORTHO05D006072 3.4e-26 121.7 94 63.8
Lsat_1_v5_gn_2_4960 Lactuca sativa HOM05D005271 ORTHO05D006072 5.8e-26 120.9 90 65.6
Ah.01g016950 Amaranthus hybridus HOM05D005271 ORTHO05D006072 7.5e-26 120.6 89 64.0
MD05G1247100 Malus domestica HOM05D005271 ORTHO05D006072 2.2e-25 119.0 91 63.7
SGA_v2.0_scaffold149G36579 Striga asiatica HOM05D005271 ORTHO05D006072 2.2e-25 119.0 106 59.4
HanXRQChr06g0184021 Helianthus annuus HOM05D005271 ORTHO05D006072 8.3e-25 117.1 97 59.8
Sc10g0007720 Simmondsia chinensis HOM05D005271 ORTHO05D006072 1.1e-24 116.7 84 65.5
Migut.N03355 Erythranthe guttata HOM05D005271 ORTHO05D006072 1.4e-24 116.3 106 56.6
Peaxi162Scf00004g02726 Petunia axillaris HOM05D005271 ORTHO05D006072 1.4e-24 116.3 108 55.6
Ah.05g173390 Amaranthus hybridus HOM05D005271 ORTHO05D006072 1.9e-24 115.9 90 62.2
Gohir.A10G107101 Gossypium hirsutum HOM05D005271 ORTHO05D006072 9.2e-24 113.6 103 56.3
PSO170G3626 Papaver somniferum HOM05D005271 ORTHO05D006072 9.2e-24 113.6 84 65.5
Sopen11g025310 Solanum pennellii HOM05D005271 ORTHO05D006072 1.2e-23 113.2 76 68.4
Migut.C01265 Erythranthe guttata HOM05D005271 ORTHO05D006072 1.6e-23 112.8 96 62.5
Rhsim12G0144200 Rhododendron simsii HOM05D005271 ORTHO05D006072 2.0e-23 112.5 127 48.0
CDE05G1696 Ceratophyllum demersum HOM05D005271 ORTHO05D006072 2.7e-23 112.1 86 66.3
EL10Ac1g00803 Beta vulgaris HOM05D005271 ORTHO05D006072 3.5e-23 111.7 93 57.0
GSVIVG01012142001 Vitis vinifera HOM05D005271 ORTHO05D006072 6.0e-23 110.9 91 61.5
MSTRG.22460 Avicennia marina HOM05D005271 ORTHO05D006072 7.8e-23 110.5 102 53.9
SalBow1G3231 Salvia bowleyana HOM05D005271 ORTHO05D006072 1.7e-22 109.4 96 63.5
SalBow6G1192 Salvia bowleyana HOM05D005271 ORTHO05D006072 3.9e-22 108.2 96 62.5
CDE05G0701 Ceratophyllum demersum HOM05D005271 ORTHO05D006072 6.6e-22 107.5 88 62.5
unitig_0.g914 Utricularia gibba HOM05D000362 ORTHO05D000325 6.6e-22 107.5 106 52.8
HPP92_012976 Vanilla planifolia HOM05D005271 ORTHO05D006072 1.5e-21 106.3 106 54.7
Cc03_g07280 Coffea canephora HOM05D005271 ORTHO05D006072 1.9e-21 105.9 93 59.1
SalBow7G2991 Salvia bowleyana HOM05D005271 ORTHO05D006072 5.6e-21 104.4 89 64.0
ATR1120G033 Amborella trichopoda HOM05D005271 ORTHO05D006072 1.2e-20 103.2 107 52.3
AUR62023913 Chenopodium quinoa HOM05D005271 ORTHO05D006072 1.2e-20 103.2 88 58.0
AUR62038333 Chenopodium quinoa HOM05D005271 ORTHO05D006072 2.8e-20 102.1 82 59.8
SGA_v2.0_scaffold118G32500 Striga asiatica HOM05D005271 ORTHO05D006072 1.1e-19 100.1 89 58.4
Os04g0612900 Oryza sativa ssp. japonica HOM05D005271 ORTHO05D006072 4.4e-18 94.7 99 50.5
COL.COLO4_15978 Corchorus olitorius HOM05D005271 ORTHO05D006072 9.8e-18 93.6 74 59.5
Haze_05264 Corylus avellana HOM05D005271 ORTHO05D006072 2.4e-16 89.0 74 62.2
Zm00001eb071020 Zea mays HOM05D005271 ORTHO05D006072 3.2e-16 88.6 99 47.5
CSS0024418 Camellia sinensis var. sinensis HOM05D005271 ORTHO05D006072 3.5e-15 85.1 73 57.5
Mapoly0098s0021 Marchantia polymorpha HOM05D005271 ORTHO05D006072 6.0e-15 84.3 103 47.6
SMO300G0007 Selaginella moellendorffii HOM05D005271 ORTHO05D006072 1.0e-14 83.6 86 53.5
PGSC0003DMG400010917 Solanum tuberosum HOM05D005271 ORTHO05D006072 1.3e-14 83.2 56 67.9
Eucgr.H02355 Eucalyptus grandis HOM05D005271 ORTHO05D006072 1.1e-13 80.1 74 56.8
Pp3c12_11530 Physcomitrium patens HOM05D005271 ORTHO05D006072 4.3e-13 78.2 88 51.1
Hund17073 Selenicereus undatus HOM05D005271 ORTHO05D006072 5.6e-13 77.8 59 64.4
EL10Ac9g21107 Beta vulgaris HOM05D005271 ORTHO05D006072 9.5e-13 77.0 66 59.1
MBI02_g01139_MAGBIO Magnolia biondii HOM05D005271 ORTHO05D006072 3.1e-11 72.0 69 56.5
AUR62004132 Chenopodium quinoa HOM05D005271 ORTHO05D006072 1.5e-10 69.7 51 64.7
Hund00748 Selenicereus undatus HOM05D005271 ORTHO05D006072 2.0e-10 69.3 61 54.1
Sp1g13000 Schrenkiella parvula HOM05D005271 ORTHO05D006072 1.3e-09 66.6 34 94.1
Aqoxy3G03156 Aquilegia oxysepala HOM05D005271 ORTHO05D006072 1.7e-09 66.2 57 57.9
MBI14_g01725_MAGBIO Magnolia biondii HOM05D005271 ORTHO05D006072 2.9e-09 65.5 50 66.0
CBR_g30301 Chara braunii HOM05D005271 ORTHO05D006072 3.2e-08 62.0 91 39.6


User provided reference genes

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