Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G31410 Arabidopsis thaliana HOM05D005729 ORTHO05D007026 1.2e-85 320.1 200 100.0
AL4G26660 Arabidopsis lyrata HOM05D005729 ORTHO05D007026 3.2e-78 295.4 200 93.5
Thhalv10017252m.g Eutrema salsugineum HOM05D005729 ORTHO05D007026 3.2e-70 268.9 204 81.4
Carub.0004s1273 Capsella rubella HOM05D005729 ORTHO05D007026 3.9e-68 261.9 198 85.9
Sp4g13900 Schrenkiella parvula HOM05D005729 ORTHO05D007026 1.5e-67 260.0 204 84.3
CARHR125040 Cardamine hirsuta HOM05D005729 ORTHO05D007026 1.0e-63 247.3 204 74.0
BcaB01g04046 Brassica carinata HOM05D005729 ORTHO05D007026 2.7e-61 239.2 204 81.9
BraA03t11026Z Brassica rapa HOM05D005729 ORTHO05D007026 2.0e-59 233.0 198 81.8
A03p17590 Brassica napus HOM05D005729 ORTHO05D007026 1.7e-58 229.9 190 84.2
BcaC02g07982 Brassica carinata HOM05D005729 ORTHO05D007026 2.2e-58 229.6 199 75.9
C04p61110 Brassica napus HOM05D005729 ORTHO05D007026 2.2e-58 229.6 199 75.9
BolC4t27596H Brassica oleracea HOM05D005729 ORTHO05D007026 2.2e-58 229.6 199 75.9
C03p20700 Brassica napus HOM05D005729 ORTHO05D007026 4.8e-58 228.4 189 84.7
BolC3t14453H Brassica oleracea HOM05D005729 ORTHO05D007026 4.8e-58 228.4 189 84.7
A04p24280 Brassica napus HOM05D005729 ORTHO05D007026 1.2e-56 223.8 193 75.6
BraA04t17947Z Brassica rapa HOM05D005729 ORTHO05D007026 1.2e-56 223.8 193 75.6
Aa31LG5G5560 Aethionema arabicum HOM05D005729 ORTHO05D007026 1.9e-54 216.5 202 74.8
THA.LOC104815860 Tarenaya hassleriana HOM05D005729 ORTHO05D007026 3.7e-50 202.2 203 69.5
EL10As7g23751 Beta vulgaris HOM05D005729 ORTHO05D007026 3.8e-47 192.2 191 69.1
EL10Ac6g13393 Beta vulgaris HOM05D005729 ORTHO05D007026 1.6e-45 186.8 191 69.1
Manes.04G092600 Manihot esculenta HOM05D005729 ORTHO05D007026 2.8e-45 186.0 197 54.8
Potri.002G237000 Populus trichocarpa HOM05D005729 ORTHO05D007026 3.0e-44 182.6 198 65.2
THA.LOC104826200 Tarenaya hassleriana HOM05D005729 ORTHO05D007026 6.8e-44 181.4 191 70.7
CANSAT64G2014 Cannabis sativa HOM05D005729 ORTHO05D007026 1.2e-43 180.6 195 58.5
Actinidia19554 Actinidia chinensis HOM05D005729 ORTHO05D007026 2.6e-43 179.5 206 56.8
Cpa.g.sc9.286 Carica papaya HOM05D005729 ORTHO05D007026 2.6e-43 179.5 202 58.9
Duzib187G1006 Durio zibethinus HOM05D005729 ORTHO05D007026 7.5e-43 177.9 197 58.4
PGSC0003DMG400035897 Solanum tuberosum HOM05D005729 ORTHO05D007026 9.8e-43 177.6 200 64.0
TWI34G0826 Tripterygium wilfordii HOM05D005729 ORTHO05D007026 1.7e-42 176.8 200 64.0
FvH4_4g34010 Fragaria vesca HOM05D005729 ORTHO05D007026 2.8e-42 176.0 197 55.3
FAN12G1178 Fragaria x ananassa HOM05D005729 ORTHO05D007026 6.3e-42 174.9 197 55.3
PGR142G3540 Punica granatum HOM05D005729 ORTHO05D007026 6.3e-42 174.9 194 55.2
Lsat_1_v5_gn_2_94961 Lactuca sativa HOM05D005729 ORTHO05D007026 8.3e-42 174.5 188 68.6
FAN22G1114 Fragaria x ananassa HOM05D005729 ORTHO05D007026 1.4e-41 173.7 197 54.8
Glyma.16G049200 Glycine max HOM05D005729 ORTHO05D007026 3.1e-41 172.6 195 60.5
Oeu003419.1 Olea europaea HOM05D005729 ORTHO05D007026 4.1e-41 172.2 200 60.5
Solyc02g094490.4 Solanum lycopersicum HOM05D005729 ORTHO05D007026 4.1e-41 172.2 198 55.6
Glyma.19G102200 Glycine max HOM05D005729 ORTHO05D007026 9.2e-41 171.0 192 58.3
Lalb_Chr22g0359961 Lupinus albus HOM05D005729 ORTHO05D007026 1.2e-40 170.6 197 58.9
RcHm_v2.0_Chr5g0049531 Rosa chinensis HOM05D005729 ORTHO05D007026 1.2e-40 170.6 198 57.1
FAN17G0918 Fragaria x ananassa HOM05D005729 ORTHO05D007026 1.6e-40 170.2 197 54.3
Potri.014G145600 Populus trichocarpa HOM05D005729 ORTHO05D007026 1.6e-40 170.2 196 55.6
FAN21G1155 Fragaria x ananassa HOM05D005729 ORTHO05D007026 3.5e-40 169.1 197 56.3
SGA_v2.0_scaffold47G17637 Striga asiatica HOM05D005729 ORTHO05D007026 3.5e-40 169.1 205 60.0
Phvul.001G085400 Phaseolus vulgaris HOM05D005729 ORTHO05D007026 4.5e-40 168.7 193 58.5
Sopen02g039170 Solanum pennellii HOM05D005729 ORTHO05D007026 4.5e-40 168.7 198 63.1
Ah.02g128910 Amaranthus hybridus HOM05D005729 ORTHO05D007026 1.3e-39 167.2 191 64.4
CiPaw.03G002600 Carya illinoinensis HOM05D005729 ORTHO05D007026 1.7e-39 166.8 190 62.1
Thecc.04G047000 Theobroma cacao HOM05D005729 ORTHO05D007026 2.3e-39 166.4 199 57.8
ClCG01G007820 Citrullus lanatus HOM05D005729 ORTHO05D007026 2.9e-39 166.0 192 55.2
MELO3C005111.2 Cucumis melo HOM05D005729 ORTHO05D007026 3.8e-39 165.6 193 57.5
HanXRQChr14g0451391 Helianthus annuus HOM05D005729 ORTHO05D007026 5.0e-39 165.2 195 63.6
CAN.G473.157 Capsicum annuum HOM05D005729 ORTHO05D007026 1.5e-38 163.7 188 63.3
Dinv33283 Davidia involucrata HOM05D005729 ORTHO05D007026 1.9e-38 163.3 204 54.4
SalBow7G1413 Salvia bowleyana HOM05D005729 ORTHO05D007026 1.9e-38 163.3 198 57.6
Sed0018343 Sechium edule HOM05D005729 ORTHO05D007026 1.9e-38 163.3 187 59.4
Sed0006238 Sechium edule HOM05D005729 ORTHO05D007026 3.3e-38 162.5 192 55.7
Medtr7g083930 Medicago truncatula HOM05D005729 ORTHO05D007026 5.6e-38 161.8 193 59.6
Sc07g0003710 Simmondsia chinensis HOM05D005729 ORTHO05D007026 5.6e-38 161.8 191 66.0
CsaV3_5G024890 Cucumis sativus L. HOM05D005729 ORTHO05D007026 1.2e-37 160.6 193 56.5
TPR.G10334 Trifolium pratense HOM05D005729 ORTHO05D007026 1.2e-37 160.6 191 59.2
Ciclev10016760m.g Citrus clementina HOM05D005729 ORTHO05D007026 2.1e-37 159.8 204 59.3
Ca_08134_v3 Cicer arietinum L. HOM05D005729 ORTHO05D007026 3.6e-37 159.1 192 63.5
FAN25G1272 Fragaria x ananassa HOM05D005729 ORTHO05D007026 3.6e-37 159.1 197 54.8
unitig_92.g28207 Utricularia gibba HOM05D005729 ORTHO05D007026 3.6e-37 159.1 208 57.2
Aqoxy5G03167 Aquilegia oxysepala HOM05D005729 ORTHO05D007026 4.7e-37 158.7 192 59.4
CSS0020873 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 4.7e-37 158.7 198 52.0
Gohir.D07G239700 Gossypium hirsutum HOM05D005729 ORTHO05D007026 6.1e-37 158.3 192 60.4
Cfa007167 Carpinus fangiana HOM05D005729 ORTHO05D007026 8.0e-37 157.9 197 63.5
MD05G1139400 Malus domestica HOM05D005729 ORTHO05D007026 8.0e-37 157.9 200 54.5
ECA238G1999 Erigeron canadensis HOM05D005729 ORTHO05D007026 1.0e-36 157.5 189 62.4
DCAR_014472 Daucus carota HOM05D005729 ORTHO05D007026 1.4e-36 157.1 197 59.9
Lju41C60T1 Lonicera japonica HOM05D005729 ORTHO05D007026 1.4e-36 157.1 202 62.4
MD00G1041400 Malus domestica HOM05D005729 ORTHO05D007026 1.4e-36 157.1 200 52.0
Lj1g0015500 Lotus japonicus HOM05D005729 ORTHO05D007026 3.0e-36 156.0 192 60.9
QL11p027744 Quercus lobata HOM05D005729 ORTHO05D007026 4.0e-36 155.6 198 57.6
AUR62036639 Chenopodium quinoa HOM05D005729 ORTHO05D007026 5.2e-36 155.2 201 61.2
TAR629G2671 Trochodendron aralioides HOM05D005729 ORTHO05D007026 8.9e-36 154.5 194 62.4
Peaxi162Scf00420g00083 Petunia axillaris HOM05D005729 ORTHO05D007026 1.2e-35 154.1 198 60.6
Psat3g093680 Pisum sativum HOM05D005729 ORTHO05D007026 1.5e-35 153.7 193 58.5
Nitab4.5_0002172g0090 Nicotiana tabacum HOM05D005729 ORTHO05D007026 2.0e-35 153.3 196 61.2
Prupe.2G125900 Prunus persica HOM05D005729 ORTHO05D007026 2.0e-35 153.3 194 54.6
MBI07_g07331_MAGBIO Magnolia biondii HOM05D005729 ORTHO05D007026 3.4e-35 152.5 190 60.5
Cfa016824 Carpinus fangiana HOM05D005729 ORTHO05D007026 4.4e-35 152.1 197 61.9
Aqoxy5G03273 Aquilegia oxysepala HOM05D005729 ORTHO05D007026 5.8e-35 151.8 193 52.8
arahy.Tifrunner.gnm1.ann1.33W0XH Arachis hypogaea HOM05D005729 ORTHO05D007026 7.5e-35 151.4 199 53.3
Gorai.001G275800 Gossypium raimondii HOM05D005729 ORTHO05D007026 7.5e-35 151.4 192 58.9
Nn4g22156 Nelumbo nucifera HOM05D005729 ORTHO05D007026 9.8e-35 151.0 204 50.0
TAR371G0439 Trochodendron aralioides HOM05D005729 ORTHO05D007026 1.3e-34 150.6 190 54.2
TAR628G1373 Trochodendron aralioides HOM05D005729 ORTHO05D007026 1.3e-34 150.6 194 61.9
Dinv25620 Davidia involucrata HOM05D000884 ORTHO05D002127 3.7e-34 149.1 192 62.5
Haze_14943 Corylus avellana HOM05D005729 ORTHO05D007026 4.9e-34 148.7 197 61.4
Eucgr.G01937 Eucalyptus grandis HOM05D005729 ORTHO05D007026 6.4e-34 148.3 192 52.1
Migut.K01484 Erythranthe guttata HOM05D005729 ORTHO05D007026 2.4e-33 146.4 192 56.2
Haze_19869 Corylus avellana HOM05D005729 ORTHO05D007026 3.2e-33 146.0 197 60.9
Atru.chr6.2652 Acer truncatum HOM05D005729 ORTHO05D007026 1.6e-32 143.7 194 59.8
Gohir.A07G232500 Gossypium hirsutum HOM05D005729 ORTHO05D007026 6.0e-32 141.7 189 56.1
Duzib264G0852 Durio zibethinus HOM05D005729 ORTHO05D007026 1.3e-31 140.6 205 52.7
ATR0559G324 Amborella trichopoda HOM05D005729 ORTHO05D007026 8.6e-31 137.9 200 48.0
Sabra02G0180500 Salix brachista HOM05D005729 ORTHO05D007026 8.6e-31 137.9 182 49.5
HPP92_011631 Vanilla planifolia HOM05D005729 ORTHO05D007026 2.5e-30 136.3 193 58.0
Zm00001eb183750 Zea mays HOM05D005729 ORTHO05D007026 5.6e-30 135.2 199 44.2
PSO017G0758 Papaver somniferum HOM05D005729 ORTHO05D007026 3.6e-29 132.5 188 57.4
Cc07_g01230 Coffea canephora HOM05D005729 ORTHO05D007026 2.3e-28 129.8 209 55.5
PSO478G2072 Papaver somniferum HOM05D005729 ORTHO05D007026 5.2e-28 128.6 188 43.6
AUR62034632 Chenopodium quinoa HOM05D000604 ORTHO05D004512 1.5e-27 127.1 124 56.5
RcHm_v2.0_Chr6g0252241 Rosa chinensis HOM05D005729 ORTHO05D007026 5.8e-27 125.2 167 47.9
COL.COLO4_13365 Corchorus olitorius HOM05D005729 ORTHO05D007026 1.7e-26 123.6 106 62.3
Nitab4.5_0000519g0260 Nicotiana tabacum HOM05D005729 ORTHO05D007026 4.9e-26 122.1 148 65.5
Rhsim08G0039300 Rhododendron simsii HOM05D005729 ORTHO05D007026 6.4e-26 121.7 143 60.1
Pp3c11_25830 Physcomitrium patens HOM05D005729 ORTHO05D007026 1.4e-25 120.6 186 43.5
Zm00001eb246070 Zea mays HOM05D005729 ORTHO05D007026 5.4e-25 118.6 196 41.8
Os02g0595400 Oryza sativa ssp. japonica HOM05D005729 ORTHO05D007026 2.7e-24 116.3 199 47.7
RcHm_v2.0_Chr2g0115461 Rosa chinensis HOM05D005729 ORTHO05D007026 7.8e-24 114.8 167 44.9
CSS0008758 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 3.0e-23 112.8 138 52.9
RcHm_v2.0_Chr7g0240621 Rosa chinensis HOM05D005729 ORTHO05D007026 3.9e-23 112.5 167 44.3
RcHm_v2.0_Chr2g0117931 Rosa chinensis HOM05D005729 ORTHO05D007026 1.1e-22 110.9 124 52.4
CDE06G2057 Ceratophyllum demersum HOM05D005729 ORTHO05D007026 1.2e-21 107.5 121 51.2
CSS0019060 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 1.6e-21 107.1 138 51.4
Haze_19868 Corylus avellana HOM05D005729 ORTHO05D007026 2.1e-21 106.7 96 60.4
RcHm_v2.0_Chr5g0026441 Rosa chinensis HOM05D005729 ORTHO05D007026 4.7e-21 105.5 124 50.8
RcHm_v2.0_Chr5g0057561 Rosa chinensis HOM05D005729 ORTHO05D007026 8.1e-21 104.8 158 50.6
RcHm_v2.0_Chr1g0315821 Rosa chinensis HOM05D005729 ORTHO05D007026 1.4e-20 104.0 124 50.8
Mapoly0127s0012 Marchantia polymorpha HOM05D005729 ORTHO05D007026 2.6e-19 99.8 187 53.5
RcHm_v2.0_Chr6g0272931 Rosa chinensis HOM05D005729 ORTHO05D007026 1.3e-18 97.4 124 50.0
Sc14g0008230 Simmondsia chinensis HOM05D005729 ORTHO05D007026 1.6e-16 90.5 113 51.3
Solyc03g083260.1 Solanum lycopersicum HOM05D005729 ORTHO05D007026 3.0e-15 86.3 87 55.2
Hma1.2p1_0033F.1_g021130 Hydrangea macrophylla HOM05D005729 ORTHO05D007026 1.2e-13 80.9 106 65.1
Psat4g074560 Pisum sativum HOM05D005729 ORTHO05D007026 8.1e-13 78.2 126 43.7
EL10Ac1g01380 Beta vulgaris HOM05D005729 ORTHO05D007026 1.4e-12 77.4 68 60.3
RcHm_v2.0_Chr6g0295141 Rosa chinensis HOM05D005729 ORTHO05D007026 1.3e-10 70.9 121 49.6
CBR_g4589 Chara braunii HOM05D005729 ORTHO05D007026 2.7e-08 63.2 184 42.4
Atru.chr6.2684 Acer truncatum HOM05D005729 ORTHO05D007026 6.6e-07 58.5 53 60.4
Atru.chr5.655 Acer truncatum HOM05D000598 ORTHO05D000480 2.5e-06 56.6 122 51.6


User provided reference genes

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