Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G31040 Arabidopsis thaliana HOM05D006699 ORTHO05D008399 1.5e-192 676.0 351 100.0
AL4G26070 Arabidopsis lyrata HOM05D006699 ORTHO05D008399 9.0e-185 650.2 351 95.7
AL4G26150 Arabidopsis lyrata HOM05D006699 ORTHO05D008399 1.2e-184 649.8 351 96.0
Carub.0004s1225 Capsella rubella HOM05D006699 ORTHO05D008399 6.5e-183 644.0 351 94.6
CARHR124570 Cardamine hirsuta HOM05D006699 ORTHO05D008399 8.8e-172 607.1 352 89.5
Sp4g13510 Schrenkiella parvula HOM05D006699 ORTHO05D008399 2.7e-165 585.5 340 90.0
BraA04t17899Z Brassica rapa HOM05D006699 ORTHO05D008399 1.7e-162 576.2 338 88.2
A04p23730 Brassica napus HOM05D006699 ORTHO05D008399 2.2e-162 575.9 338 87.9
C04p60180 Brassica napus HOM05D006699 ORTHO05D008399 4.8e-162 574.7 338 88.2
BolC4t27520H Brassica oleracea HOM05D006699 ORTHO05D008399 4.8e-162 574.7 338 88.2
Thhalv10016897m.g Eutrema salsugineum HOM05D006699 ORTHO05D008399 1.6e-160 569.7 340 87.4
QL08p041638 Quercus lobata HOM05D006699 ORTHO05D008399 1.4e-129 466.8 344 70.3
QL08p041677 Quercus lobata HOM05D006699 ORTHO05D008399 1.2e-128 463.8 344 70.1
TWI59G0496 Tripterygium wilfordii HOM05D006699 ORTHO05D008399 2.7e-128 462.6 344 69.8
Ciclev10015418m.g Citrus clementina HOM05D006699 ORTHO05D008399 2.3e-127 459.5 349 68.2
Dinv15443 Davidia involucrata HOM05D006699 ORTHO05D008399 2.3e-127 459.5 347 69.2
Cfa023335 Carpinus fangiana HOM05D006699 ORTHO05D008399 3.0e-127 459.1 344 68.9
GSVIVG01020707001 Vitis vinifera HOM05D006699 ORTHO05D008399 3.0e-127 459.1 338 69.5
Thecc.01G150500 Theobroma cacao HOM05D006699 ORTHO05D008399 6.6e-127 458.0 345 69.3
PGR042G0843 Punica granatum HOM05D006699 ORTHO05D008399 8.6e-127 457.6 343 68.5
COL.COLO4_33580 Corchorus olitorius HOM05D006699 ORTHO05D008399 1.9e-126 456.4 353 69.1
Eucgr.A01914 Eucalyptus grandis HOM05D006699 ORTHO05D008399 3.3e-126 455.7 357 67.5
CiPaw.04G132200 Carya illinoinensis HOM05D006699 ORTHO05D008399 7.3e-126 454.5 345 69.6
Potri.014G142200 Populus trichocarpa HOM05D006699 ORTHO05D008399 9.5e-126 454.1 345 67.5
TAR626G0153 Trochodendron aralioides HOM05D006699 ORTHO05D008399 4.7e-125 451.8 369 63.7
Haze_13371 Corylus avellana HOM05D006699 ORTHO05D008399 6.8e-124 448.0 344 67.2
Gohir.A12G086400 Gossypium hirsutum HOM05D006699 ORTHO05D008399 8.9e-124 447.6 344 68.0
Gorai.008G095400 Gossypium raimondii HOM05D006699 ORTHO05D008399 1.5e-123 446.8 344 68.0
HanXRQChr17g0557951 Helianthus annuus HOM05D006699 ORTHO05D008399 1.5e-123 446.8 331 70.4
AUR62039018 Chenopodium quinoa HOM05D006699 ORTHO05D008399 3.4e-123 445.7 357 67.2
CSS0012388 Camellia sinensis var. sinensis HOM05D006699 ORTHO05D008399 1.1e-121 440.7 339 67.3
ECA233G1148 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.1e-121 440.7 336 69.0
Lsat_1_v5_gn_8_140640 Lactuca sativa HOM05D006699 ORTHO05D008399 1.9e-121 439.9 333 69.1
Gohir.D12G085000 Gossypium hirsutum HOM05D006699 ORTHO05D008399 4.1e-121 438.7 344 67.2
Lj1A681T38 Lonicera japonica HOM05D006699 ORTHO05D008399 5.4e-121 438.3 348 64.9
MD17G1230900 Malus domestica HOM05D006699 ORTHO05D008399 3.5e-120 435.6 338 70.4
EL10Ac2g03349 Beta vulgaris HOM05D006699 ORTHO05D008399 7.8e-120 434.5 346 66.5
CANSAT64G2599 Cannabis sativa HOM05D006699 ORTHO05D008399 1.0e-119 434.1 339 67.3
MD09G1238000 Malus domestica HOM05D006699 ORTHO05D008399 1.7e-119 433.3 337 69.1
ClCG02G017820 Citrullus lanatus HOM05D006699 ORTHO05D008399 2.3e-119 433.0 354 65.0
Aa31LG1G7380 Aethionema arabicum HOM05D006699 ORTHO05D008399 6.6e-119 431.4 353 67.7
MSTRG.15092 Avicennia marina HOM05D006699 ORTHO05D008399 1.5e-118 430.3 341 66.6
Lj3g0015335 Lotus japonicus HOM05D006699 ORTHO05D008399 3.3e-118 429.1 343 64.7
arahy.Tifrunner.gnm1.ann1.GAG0UF Arachis hypogaea HOM05D006699 ORTHO05D008399 4.3e-118 428.7 344 64.5
Prupe.3G118500 Prunus persica HOM05D006699 ORTHO05D008399 1.2e-117 427.2 348 66.7
arahy.Tifrunner.gnm1.ann1.0K2T49 Arachis hypogaea HOM05D006699 ORTHO05D008399 1.1e-116 424.1 344 64.8
SGA_v2.0_scaffold9G04816 Striga asiatica HOM05D006699 ORTHO05D008399 1.1e-116 424.1 335 66.3
CsaV3_6G018450 Cucumis sativus L. HOM05D006699 ORTHO05D008399 1.8e-116 423.3 347 64.3
Manes.02G091200 Manihot esculenta HOM05D006699 ORTHO05D008399 8.9e-116 421.0 354 63.3
Ca_18111_v3 Cicer arietinum L. HOM05D006699 ORTHO05D008399 1.2e-115 420.6 329 66.0
RcHm_v2.0_Chr2g0129651 Rosa chinensis HOM05D006699 ORTHO05D008399 1.5e-115 420.2 339 67.0
FvH4_6g27380 Fragaria vesca HOM05D006699 ORTHO05D008399 2.0e-115 419.9 343 67.1
Rhsim06G0131200 Rhododendron simsii HOM05D006699 ORTHO05D008399 1.7e-114 416.8 310 67.4
PGSC0003DMG400007857 Solanum tuberosum HOM05D006699 ORTHO05D008399 2.2e-114 416.4 349 64.5
Migut.M00261 Erythranthe guttata HOM05D006699 ORTHO05D008399 2.9e-114 416.0 347 64.0
Psat7g165360 Pisum sativum HOM05D006699 ORTHO05D008399 1.1e-113 414.1 345 63.5
CDE10G1046 Ceratophyllum demersum HOM05D006699 ORTHO05D008399 1.4e-113 413.7 335 64.8
Glyma.06G277600 Glycine max HOM05D006699 ORTHO05D008399 2.4e-113 412.9 343 64.1
Sabra14G0107300 Salix brachista HOM05D006699 ORTHO05D008399 1.2e-112 410.6 364 61.8
unitig_0.g2026 Utricularia gibba HOM05D006699 ORTHO05D008399 1.6e-112 410.2 360 61.4
Actinidia11153 Actinidia chinensis HOM05D006699 ORTHO05D008399 1.0e-111 407.5 338 65.7
PSO229G0039 Papaver somniferum HOM05D006699 ORTHO05D008399 1.0e-111 407.5 343 61.8
PSO675G3944 Papaver somniferum HOM05D006699 ORTHO05D008399 2.3e-111 406.4 357 59.9
Lalb_Chr01g0006001 Lupinus albus HOM05D006699 ORTHO05D008399 3.0e-111 406.0 343 64.1
Phvul.011G130500 Phaseolus vulgaris HOM05D006699 ORTHO05D008399 3.9e-111 405.6 343 63.0
VMungo1127G1340 Vigna mungo HOM05D006699 ORTHO05D008399 5.1e-111 405.2 343 63.0
FAN14G2123 Fragaria x ananassa HOM05D006699 ORTHO05D008399 1.1e-110 404.1 355 64.5
Medtr4g079850 Medicago truncatula HOM05D006699 ORTHO05D008399 1.2e-109 400.6 354 62.4
Peaxi162Scf00384g00423 Petunia axillaris HOM05D006699 ORTHO05D008399 1.6e-109 400.2 336 64.0
FAN09G4348 Fragaria x ananassa HOM05D006699 ORTHO05D008399 5.2e-108 395.2 374 61.5
CAN.G1049.6 Capsicum annuum HOM05D006699 ORTHO05D008399 2.0e-107 393.3 344 62.5
DCAR_017060 Daucus carota HOM05D006699 ORTHO05D008399 9.9e-107 391.0 331 63.7
Nitab4.5_0001095g0100 Nicotiana tabacum HOM05D006699 ORTHO05D008399 8.4e-106 387.9 336 61.6
Hund07812 Selenicereus undatus HOM05D006699 ORTHO05D008399 3.5e-104 382.5 364 59.1
Sopen12g006230 Solanum pennellii HOM05D006699 ORTHO05D008399 7.8e-104 381.3 307 66.8
PGSC0003DMG400020443 Solanum tuberosum HOM05D006699 ORTHO05D008399 7.8e-104 381.3 343 61.8
Solyc12g010870.3 Solanum lycopersicum HOM05D006699 ORTHO05D008399 1.7e-103 380.2 323 64.1
Solyc07g055050.3 Solanum lycopersicum HOM05D006699 ORTHO05D008399 1.6e-101 373.6 350 60.3
Sopen07g027160 Solanum pennellii HOM05D006699 ORTHO05D008399 3.6e-101 372.5 350 60.6
ATR0602G053 Amborella trichopoda HOM05D006699 ORTHO05D008399 1.8e-100 370.2 321 59.2
Nitab4.5_0000537g0130 Nicotiana tabacum HOM05D006699 ORTHO05D008399 6.4e-98 361.7 350 59.1
Os01g0673800 Oryza sativa ssp. japonica HOM05D006699 ORTHO05D008399 7.1e-97 358.2 322 59.0
Manes.01G133200 Manihot esculenta HOM05D006699 ORTHO05D008399 3.3e-94 349.4 281 65.5
FAN02G3357 Fragaria x ananassa HOM05D006699 ORTHO05D008399 4.3e-94 349.0 310 63.5
Sc06g0009080 Simmondsia chinensis HOM05D006699 ORTHO05D008399 3.6e-93 345.9 271 66.4
Sed0000889 Sechium edule HOM05D006699 ORTHO05D008399 2.0e-91 340.1 285 66.0
Nitab4.5_0011277g0010 Nicotiana tabacum HOM05D006699 ORTHO05D008399 7.6e-91 338.2 352 56.0
Nitab4.5_0009754g0010 Nicotiana tabacum HOM05D006699 ORTHO05D008399 9.9e-91 337.8 350 56.6
Lju1655A0G36 Lonicera japonica HOM05D006699 ORTHO05D008399 1.1e-89 334.3 416 47.6
Aqoxy1G02064 Aquilegia oxysepala HOM05D006699 ORTHO05D008399 2.4e-89 333.2 261 68.6
Sed0016519 Sechium edule HOM05D006699 ORTHO05D008399 1.2e-88 330.9 343 55.7
Peaxi162Scf00469g00217 Petunia axillaris HOM05D006699 ORTHO05D008399 2.7e-88 329.7 338 56.8
Eucgr.K01127 Eucalyptus grandis HOM05D006699 ORTHO05D008399 4.9e-82 308.9 337 53.7
MELO3C013567.2 Cucumis melo HOM05D006699 ORTHO05D008399 6.5e-82 308.5 242 65.7
AUR62037610 Chenopodium quinoa HOM05D006426 ORTHO05D008399 3.2e-81 306.2 240 68.3
Oeu018752.1 Olea europaea HOM05D006699 ORTHO05D008399 2.1e-80 303.5 239 65.7
HPP92_009665 Vanilla planifolia HOM05D006699 ORTHO05D008399 1.3e-79 300.8 365 48.8
TPR.G28306 Trifolium pratense HOM05D006699 ORTHO05D008399 2.5e-78 296.6 283 57.6
Cc05_g08340 Coffea canephora HOM05D006699 ORTHO05D008399 2.1e-77 293.5 253 63.2
vmacro12376 Vaccinium macrocarpon HOM05D006699 ORTHO05D008399 2.5e-70 270.0 339 47.5
Mapoly0038s0046 Marchantia polymorpha HOM05D006699 ORTHO05D008399 5.7e-70 268.9 303 49.2
Ah.01g003530 Amaranthus hybridus HOM05D006426 ORTHO05D007737 4.8e-69 265.8 183 70.5
Pp3c8_13580 Physcomitrium patens HOM05D006699 ORTHO05D008399 6.3e-69 265.4 320 47.8
Atru.chr6.2796 Acer truncatum HOM05D006699 ORTHO05D008399 6.3e-61 238.8 186 66.1
AagrBONN_evm.TU.Sc2ySwM_228.3020 Anthoceros agrestis HOM05D006699 ORTHO05D008399 1.0e-58 231.5 285 45.6
SEGI_23271 Sequoiadendron giganteum HOM05D006699 ORTHO05D008399 3.8e-58 229.6 250 49.6
Cpa.g.sc52.174 Carica papaya HOM05D006699 ORTHO05D008399 2.1e-56 223.8 190 64.7
SMO014G0045 Selaginella moellendorffii HOM05D006699 ORTHO05D008399 2.1e-56 223.8 318 42.8
Zm00001eb360100 Zea mays HOM05D006699 ORTHO05D008399 1.4e-47 194.5 246 47.2
Cc05_g08350 Coffea canephora HOM05D006699 ORTHO05D008399 1.1e-36 158.3 99 76.8
BraA03t11005Z Brassica rapa HOM05D006699 ORTHO05D008399 3.1e-28 130.2 93 74.2
Ah.01g003520 Amaranthus hybridus HOM05D006699 ORTHO05D008399 1.2e-27 128.3 104 62.5
A03p17330 Brassica napus HOM05D006699 ORTHO05D008399 4.5e-27 126.3 93 73.1
vmacro12375 Vaccinium macrocarpon HOM05D006699 ORTHO05D008399 1.0e-26 125.2 103 60.2
Atru.chr6.2795 Acer truncatum HOM05D006699 ORTHO05D008399 2.5e-25 120.6 79 73.4
Cre01.g049600 Chlamydomonas reinhardtii HOM05D006699 ORTHO05D008399 2.8e-24 117.1 285 33.3
CDE10G0215 Ceratophyllum demersum HOM05D006699 ORTHO05D008399 1.7e-18 97.8 60 78.3
Lsat_1_v5_gn_2_38761 Lactuca sativa HOM05D006699 ORTHO05D008399 3.3e-17 93.6 77 63.6
PRCOL_00001453 Prasinoderma coloniale HOM05D006699 ORTHO05D008399 4.3e-17 93.2 261 28.7
C03p20440 Brassica napus HOM05D006699 ORTHO05D042655 1.7e-13 81.3 54 77.8
BolC3t14422H Brassica oleracea HOM05D006699 ORTHO05D042655 1.7e-13 81.3 54 77.8
MCO04G044 Micromonas commoda HOM05D006699 ORTHO05D008399 1.7e-13 81.3 272 29.0
TPR.G33085 Trifolium pratense HOM05D006699 ORTHO05D008399 8.6e-10 68.9 47 72.3


User provided reference genes

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