Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G30920 Arabidopsis thaliana HOM05D004373 ORTHO05D005203 8.1e-180 633.6 323 100.0
AL4G25860 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 1.4e-171 606.3 324 95.4
Carub.0004s1212 Capsella rubella HOM05D004373 ORTHO05D005203 1.7e-161 572.8 323 89.2
Thhalv10016964m.g Eutrema salsugineum HOM05D004373 ORTHO05D005203 3.3e-149 531.9 318 85.8
CARHR124420 Cardamine hirsuta HOM05D004373 ORTHO05D005203 6.2e-148 527.7 317 86.1
Sp4g13390 Schrenkiella parvula HOM05D004373 ORTHO05D005203 2.4e-147 525.8 317 83.6
A04p23610 Brassica napus HOM05D004373 ORTHO05D005203 9.0e-147 523.9 312 84.9
BcaB06g28458 Brassica carinata HOM05D004373 ORTHO05D005203 7.6e-146 520.8 312 84.0
C04p60040 Brassica napus HOM05D004373 ORTHO05D005203 1.4e-144 516.5 311 83.6
BraA04t17887Z Brassica rapa HOM05D004373 ORTHO05D005203 1.0e-142 510.4 330 79.7
BcaB02g10348 Brassica carinata HOM05D004373 ORTHO05D005203 2.1e-140 502.7 311 82.3
Aa31LG5G6000 Aethionema arabicum HOM05D004373 ORTHO05D005203 6.5e-137 491.1 310 78.7
BcaB06g28393 Brassica carinata HOM05D004373 ORTHO05D005203 1.6e-127 459.9 318 76.1
THA.LOC104800821 Tarenaya hassleriana HOM05D004373 ORTHO05D005203 4.2e-120 435.3 319 68.3
Eucgr.D00004 Eucalyptus grandis HOM05D004373 ORTHO05D005203 2.0e-117 426.4 315 67.9
TWI60G0341 Tripterygium wilfordii HOM05D004373 ORTHO05D005203 2.0e-117 426.4 282 73.4
Gohir.D01G165500 Gossypium hirsutum HOM05D004373 ORTHO05D005203 9.7e-117 424.1 296 70.9
Gorai.002G205900 Gossypium raimondii HOM05D004373 ORTHO05D005203 9.7e-117 424.1 296 70.9
Gohir.A01G174300 Gossypium hirsutum HOM05D004373 ORTHO05D005203 2.2e-116 422.9 296 70.6
Aqoxy1G01913 Aquilegia oxysepala HOM05D004373 ORTHO05D005203 4.8e-116 421.8 248 78.6
COL.COLO4_33707 Corchorus olitorius HOM05D004373 ORTHO05D005203 4.8e-116 421.8 293 71.3
RcHm_v2.0_Chr2g0150821 Rosa chinensis HOM05D004373 ORTHO05D005203 1.4e-115 420.2 242 79.8
RcHm_v2.0_Chr4g0446711 Rosa chinensis HOM05D004373 ORTHO05D005203 1.8e-115 419.9 244 79.1
QL07p014019 Quercus lobata HOM05D004373 ORTHO05D005203 4.1e-115 418.7 258 76.0
EL10Ac9g21021 Beta vulgaris HOM05D004373 ORTHO05D005203 6.9e-115 417.9 245 78.4
Potri.014G093100 Populus trichocarpa HOM05D004373 ORTHO05D005203 9.1e-115 417.5 295 69.8
AUR62041333 Chenopodium quinoa HOM05D004373 ORTHO05D005203 1.2e-114 417.2 267 74.2
Ciclev10017823m.g Citrus clementina HOM05D004373 ORTHO05D005203 1.2e-114 417.2 291 71.1
Sopen07g029220 Solanum pennellii HOM05D004373 ORTHO05D005203 1.5e-114 416.8 241 80.5
FvH4_6g37760 Fragaria vesca HOM05D004373 ORTHO05D005203 2.0e-114 416.4 242 79.3
Peaxi162Scf00154g00813 Petunia axillaris HOM05D004373 ORTHO05D005203 2.0e-114 416.4 242 79.8
Ca_06293_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 2.6e-114 416.0 245 78.8
Cc05_g09170 Coffea canephora HOM05D004373 ORTHO05D005203 4.5e-114 415.2 257 75.9
PGR042G0892 Punica granatum HOM05D004373 ORTHO05D005203 4.5e-114 415.2 317 68.1
Thecc.01G158800 Theobroma cacao HOM05D004373 ORTHO05D005203 4.5e-114 415.2 258 75.6
Lj2g0023469 Lotus japonicus HOM05D004373 ORTHO05D005203 5.9e-114 414.8 253 75.9
FAN14G0255 Fragaria x ananassa HOM05D004373 ORTHO05D005203 7.7e-114 414.5 242 78.9
arahy.Tifrunner.gnm1.ann1.JRDS1A Arachis hypogaea HOM05D004373 ORTHO05D005203 1.0e-113 414.1 291 68.0
FAN05G3369 Fragaria x ananassa HOM05D004373 ORTHO05D005203 1.0e-113 414.1 241 79.3
Atru.chr6.3556 Acer truncatum HOM05D004373 ORTHO05D005203 1.7e-113 413.3 281 71.9
CAN.G1481.10 Capsicum annuum HOM05D004373 ORTHO05D005203 1.7e-113 413.3 240 80.0
arahy.Tifrunner.gnm1.ann1.GN05X3 Arachis hypogaea HOM05D004373 ORTHO05D005203 2.2e-113 412.9 291 68.4
Phvul.008G264200 Phaseolus vulgaris HOM05D004373 ORTHO05D005203 2.2e-113 412.9 303 66.7
Hma1.2p1_0178F.1_g078200 Hydrangea macrophylla HOM05D004373 ORTHO05D005203 2.9e-113 412.5 256 74.6
Solyc07g055850.4 Solanum lycopersicum HOM05D004373 ORTHO05D005203 6.5e-113 411.4 282 71.6
Glyma.02G288400 Glycine max HOM05D004373 ORTHO05D005203 8.5e-113 411.0 253 75.9
Dinv12714 Davidia involucrata HOM05D004373 ORTHO05D005203 1.1e-112 410.6 300 66.7
Lsat_1_v5_gn_8_31981 Lactuca sativa HOM05D004373 ORTHO05D005203 1.1e-112 410.6 252 74.2
Medtr5g091910 Medicago truncatula HOM05D004373 ORTHO05D005203 1.4e-112 410.2 242 77.7
LjContig00222g0009609 Lotus japonicus HOM05D004373 ORTHO05D005203 1.9e-112 409.8 251 76.1
VMungo0647G0741 Vigna mungo HOM05D004373 ORTHO05D005203 2.5e-112 409.5 303 65.7
CiPaw.03G195500 Carya illinoinensis HOM05D004373 ORTHO05D005203 3.2e-112 409.1 322 64.6
Haze_13471 Corylus avellana HOM05D004373 ORTHO05D005203 5.5e-112 408.3 308 65.3
Glyma.14G026600 Glycine max HOM05D004373 ORTHO05D005203 5.5e-112 408.3 292 68.5
Lalb_Chr10g0106811 Lupinus albus HOM05D004373 ORTHO05D005203 7.2e-112 407.9 246 76.4
Manes.12G048800 Manihot esculenta HOM05D004373 ORTHO05D005203 9.4e-112 407.5 243 77.8
SalBow7G3596 Salvia bowleyana HOM05D004373 ORTHO05D005203 9.4e-112 407.5 247 76.1
TPR.G12597 Trifolium pratense HOM05D004373 ORTHO05D005203 9.4e-112 407.5 268 72.8
Prupe.3G169300 Prunus persica HOM05D004373 ORTHO05D005203 1.6e-111 406.8 305 65.2
Ah.01g016050 Amaranthus hybridus HOM05D004373 ORTHO05D005203 2.1e-111 406.4 309 66.7
DCAR_013302 Daucus carota HOM05D004373 ORTHO05D005203 4.7e-111 405.2 252 73.8
Migut.M00217 Erythranthe guttata HOM05D004373 ORTHO05D005203 4.7e-111 405.2 287 68.6
CANSAT64G2747 Cannabis sativa HOM05D004373 ORTHO05D005203 7.9e-111 404.4 264 72.3
ECA233G5691 Erigeron canadensis HOM05D004373 ORTHO05D005203 7.9e-111 404.4 269 70.6
Nn3g21008 Nelumbo nucifera HOM05D004373 ORTHO05D005203 1.0e-110 404.1 291 68.4
Psat2g014440 Pisum sativum HOM05D004373 ORTHO05D005203 1.0e-110 404.1 245 75.9
unitig_747.g21614 Utricularia gibba HOM05D004373 ORTHO05D005203 6.7e-110 401.4 270 69.3
Actinidia11187 Actinidia chinensis HOM05D004373 ORTHO05D005203 8.8e-110 401.0 311 63.7
CSS0005427 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 8.8e-110 401.0 315 63.8
MD17G1142800 Malus domestica HOM05D004373 ORTHO05D005203 1.5e-109 400.2 287 67.6
MSTRG.6768 Avicennia marina HOM05D004373 ORTHO05D005203 2.0e-109 399.8 242 74.8
HanXRQChr10g0305621 Helianthus annuus HOM05D004373 ORTHO05D005203 5.7e-109 398.3 287 66.2
Os06g0152300 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 5.7e-109 398.3 246 74.4
FAN02G0860 Fragaria x ananassa HOM05D004373 ORTHO05D005203 3.7e-108 395.6 261 72.4
CsaV3_6G015650 Cucumis sativus L. HOM05D004373 ORTHO05D005203 1.1e-107 394.0 320 61.9
HanXRQChr13g0386831 Helianthus annuus HOM05D004373 ORTHO05D005203 1.1e-107 394.0 278 67.6
PSO675G5443 Papaver somniferum HOM05D004373 ORTHO05D005203 1.4e-107 393.7 309 61.8
PSO541G0058 Papaver somniferum HOM05D004373 ORTHO05D005203 3.1e-107 392.5 309 60.8
MELO3C019708.2 Cucumis melo HOM05D004373 ORTHO05D005203 4.1e-107 392.1 323 61.9
ATR0213G014 Amborella trichopoda HOM05D004373 ORTHO05D005203 7.0e-107 391.3 269 68.0
Zm00001eb376720 Zea mays HOM05D004373 ORTHO05D005203 1.6e-106 390.2 245 73.5
HanXRQChr12g0367481 Helianthus annuus HOM05D004373 ORTHO05D005203 2.0e-106 389.8 248 71.4
Zm00001eb347960 Zea mays HOM05D004373 ORTHO05D005203 2.0e-106 389.8 242 74.4
CARHR124890 Cardamine hirsuta HOM05D004373 ORTHO05D005203 2.6e-106 389.4 217 83.4
MD09G1156300 Malus domestica HOM05D004373 ORTHO05D005203 4.5e-106 388.7 292 64.4
Zm00001eb348020 Zea mays HOM05D004373 ORTHO05D005203 2.2e-105 386.3 245 73.1
ClCG02G018260 Citrullus lanatus HOM05D004373 ORTHO05D005203 2.1e-103 379.8 323 60.7
SGA_v2.0_scaffold265G46119 Striga asiatica HOM05D004373 ORTHO05D005203 1.4e-102 377.1 337 56.7
CDE02G2202 Ceratophyllum demersum HOM05D004373 ORTHO05D005203 1.2e-101 374.0 277 62.8
SGA_v2.0_scaffold34G13681 Striga asiatica HOM05D004373 ORTHO05D005203 1.2e-101 374.0 250 70.0
MBI06_g08521_MAGBIO Magnolia biondii HOM05D004373 ORTHO05D005203 4.4e-101 372.1 269 64.3
Sabra14G0067500 Salix brachista HOM05D004373 ORTHO05D005203 1.7e-100 370.2 278 65.5
Sabra14G0069300 Salix brachista HOM05D004373 ORTHO05D005203 1.6e-98 363.6 379 51.7
Lj6A610T47 Lonicera japonica HOM05D004373 ORTHO05D005203 3.5e-98 362.5 256 67.6
HPP92_000569 Vanilla planifolia HOM05D004373 ORTHO05D005203 3.5e-98 362.5 315 57.1
FAN09G0397 Fragaria x ananassa HOM05D003004 ORTHO05D003860 4.5e-98 362.1 236 73.3
RcHm_v2.0_Chr7g0218911 Rosa chinensis HOM05D004373 ORTHO05D005203 7.7e-98 361.3 214 76.6
Duzib147G0031 Durio zibethinus HOM05D004373 ORTHO05D005203 2.2e-97 359.8 288 63.9
Sed0027414 Sechium edule HOM05D004373 ORTHO05D005203 8.5e-97 357.8 265 67.2
Nitab4.5_0001121g0130 Nicotiana tabacum HOM05D004373 ORTHO05D005203 2.7e-95 352.8 241 71.0
Hund00826 Selenicereus undatus HOM05D004373 ORTHO05D005203 3.6e-95 352.4 344 55.2
Gorai.002G206300 Gossypium raimondii HOM05D004373 ORTHO05D005203 1.7e-92 343.6 254 67.3
Rhsim06G0122100 Rhododendron simsii HOM05D004373 ORTHO05D005203 5.9e-90 335.1 449 44.8
vmacro12435 Vaccinium macrocarpon HOM05D004373 ORTHO05D005203 1.9e-88 330.1 248 63.3
SGA_v2.0_scaffold34G13678 Striga asiatica HOM05D004373 ORTHO05D005203 2.8e-87 326.2 215 71.2
AagrBONN_evm.TU.Sc2ySwM_228.3026 Anthoceros agrestis HOM05D004373 ORTHO05D005203 4.0e-86 322.4 309 52.8
Pp3c16_12920 Physcomitrium patens HOM05D004373 ORTHO05D005203 4.0e-86 322.4 266 56.0
Manes.17G059600 Manihot esculenta HOM05D004373 ORTHO05D005203 5.2e-86 322.0 307 56.0
Manes.16G042550 Manihot esculenta HOM05D004373 ORTHO05D005203 6.8e-86 321.6 252 63.9
Sed0000249 Sechium edule HOM05D004373 ORTHO05D005203 5.9e-82 308.5 271 60.9
Gohir.D01G165850 Gossypium hirsutum HOM05D004373 ORTHO05D005203 1.1e-80 304.3 233 64.8
BcaC02g11171 Brassica carinata HOM05D004373 ORTHO05D005203 7.0e-75 285.0 224 66.5
CBR_g50290 Chara braunii HOM05D004373 ORTHO05D005203 2.7e-74 283.1 259 51.0
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 1.1e-72 277.7 167 76.0
SMO115G0194 Selaginella moellendorffii HOM05D004373 ORTHO05D005203 2.8e-71 273.1 213 57.7
Zm00001eb348030 Zea mays HOM05D004373 ORTHO05D005203 2.2e-68 263.5 177 71.8
PRCOL_00002744 Prasinoderma coloniale HOM05D004373 ORTHO05D005203 7.0e-67 258.5 256 48.4
MCO09G686 Micromonas commoda HOM05D004373 ORTHO05D005203 2.0e-66 256.9 253 51.8
Zm00001eb347990 Zea mays HOM05D004373 ORTHO05D005203 2.7e-66 256.5 165 72.7
Sc12g0003760 Simmondsia chinensis HOM05D004373 ORTHO05D005203 4.3e-64 249.2 159 71.7
Haze_26971 Corylus avellana HOM05D004373 ORTHO05D005203 1.7e-60 237.3 253 45.1
TAR626G1318 Trochodendron aralioides HOM05D004373 ORTHO05D005203 6.4e-60 235.3 141 75.9
AL283U10040 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 2.4e-59 233.4 119 94.1
Actinidia12819 Actinidia chinensis HOM05D003004 ORTHO05D005203 1.6e-55 220.7 206 56.3
Gohir.A01G174700 Gossypium hirsutum HOM05D004373 ORTHO05D005203 2.1e-55 220.3 139 74.8
QL07p048830 Quercus lobata HOM05D004373 ORTHO05D005203 4.7e-55 219.2 191 57.6
SGA_v2.0_scaffold425G51480 Striga asiatica HOM05D004373 ORTHO05D005203 4.4e-53 212.6 255 49.0
HPP92_000565 Vanilla planifolia HOM05D004373 ORTHO05D005203 9.9e-53 211.5 137 70.1
Cre10.g423750 Chlamydomonas reinhardtii HOM05D004373 ORTHO05D005203 1.4e-51 207.6 246 43.1
Zm00001eb348180 Zea mays HOM05D004373 ORTHO05D005203 5.4e-51 205.7 131 73.3
C04p19750 Brassica napus HOM05D004373 ORTHO05D005203 3.5e-50 203.0 136 74.3
BolC4t23508H Brassica oleracea HOM05D004373 ORTHO05D005203 3.5e-50 203.0 136 74.3
Os06g0152400 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 2.5e-48 196.8 167 57.5
Hund07740 Selenicereus undatus HOM05D004373 ORTHO05D005203 1.6e-47 194.1 203 53.2
GSVIVG01003300001 Vitis vinifera HOM05D004373 ORTHO05D005203 2.4e-46 190.3 126 71.4
BcaC02g11170 Brassica carinata HOM05D004373 ORTHO05D005203 1.2e-45 188.0 164 61.6
AUR62024008 Chenopodium quinoa HOM05D004373 ORTHO05D005203 3.4e-45 186.4 112 73.2
QL08p043446 Quercus lobata HOM05D004373 ORTHO05D005203 1.3e-44 184.5 110 78.2
Nitab4.5_0002737g0030 Nicotiana tabacum HOM05D004373 ORTHO05D005203 1.4e-43 181.0 99 80.8
GSVIVG01003298001 Vitis vinifera HOM05D004373 ORTHO05D005203 1.9e-43 180.6 107 77.6
Ca_29372_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 2.7e-42 176.8 239 38.1
Nitab4.5_0002737g0010 Nicotiana tabacum HOM05D004373 ORTHO05D005203 4.0e-38 162.9 92 80.4
Haze_27054 Corylus avellana HOM05D004373 ORTHO05D005203 5.3e-38 162.5 251 37.1
Cfa026944 Carpinus fangiana HOM05D001144 ORTHO05D125916 4.9e-36 156.0 247 38.5
Mapoly0024s0082 Marchantia polymorpha HOM05D004373 ORTHO05D005203 1.8e-33 147.5 158 50.0
SEGI_21332 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 5.6e-32 142.5 82 74.4
Manes.12G052251 Manihot esculenta HOM05D004373 ORTHO05D005203 4.0e-30 136.3 76 77.6
TAR626G1796 Trochodendron aralioides HOM05D004034 ORTHO05D004210 2.6e-29 133.7 123 56.9
QL08p043443 Quercus lobata HOM05D004373 ORTHO05D005203 4.9e-28 129.4 77 71.4
Zm00001eb348170 Zea mays HOM05D004373 ORTHO05D005203 7.1e-27 125.6 76 71.1
C04p19740 Brassica napus HOM05D004373 ORTHO05D005203 2.3e-25 120.6 94 64.9
Oeu051655.1 Olea europaea HOM05D004373 ORTHO05D005203 1.1e-24 118.2 66 74.2
CSS0048638 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 2.0e-21 107.5 61 75.4
Zm00001eb347980 Zea mays HOM05D004373 ORTHO05D005203 3.4e-21 106.7 245 29.4
CSS0011448 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 2.2e-20 104.0 56 76.8
BolC4t23507H Brassica oleracea HOM05D004373 ORTHO05D005203 8.4e-20 102.1 71 70.4
Actinidia28382 Actinidia chinensis HOM05D004373 ORTHO05D005203 7.1e-19 99.0 138 45.7
Oeu025155.1 Olea europaea HOM05D004373 ORTHO05D005203 1.5e-16 91.3 50 82.0
RcHm_v2.0_Chr4g0436731 Rosa chinensis HOM05D004373 ORTHO05D005203 4.8e-15 86.3 47 78.7
Cpa.g.sc50.65 Carica papaya HOM05D004373 ORTHO05D005203 1.8e-14 84.3 96 50.0
CSS0023039 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 6.5e-12 75.9 142 33.8
SEGI_33824 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 1.1e-11 75.1 60 46.7
CARHR124880 Cardamine hirsuta HOM05D004373 ORTHO05D005203 3.2e-11 73.6 88 59.1
BraA05t20404Z Brassica rapa HOM05D004373 ORTHO05D005203 2.1e-10 70.9 45 71.1
AagrBONN_evm.TU.Sc2ySwM_117.1522 Anthoceros agrestis HOM05D002041 ORTHO05D002364 5.7e-08 62.8 102 33.3
Zm00001eb348000 Zea mays HOM05D004373 ORTHO05D005203 4.1e-06 56.6 76 39.5
Thecc.04G261300 Theobroma cacao HOM05D001254 ORTHO05D001386 6.9e-06 55.8 146 27.4
Thecc.04G261200 Theobroma cacao HOM05D001254 ORTHO05D001386 9.1e-06 55.5 146 27.4


User provided reference genes

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