Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G30505 Arabidopsis thaliana HOM05D008517 ORTHO05D010482 3.0e-166 588.6 322 100.0
AL4G25390 Arabidopsis lyrata HOM05D008517 ORTHO05D010482 4.7e-156 554.7 322 93.5
Carub.0004s1167 Capsella rubella HOM05D008517 ORTHO05D010482 3.2e-144 515.4 327 84.7
Sp4g13060 Schrenkiella parvula HOM05D008517 ORTHO05D010482 6.7e-126 454.5 312 77.2
CARHR123960 Cardamine hirsuta HOM05D008517 ORTHO05D010482 8.7e-126 454.1 322 76.1
Thhalv10016822m.g Eutrema salsugineum HOM05D008517 ORTHO05D010482 1.1e-123 447.2 309 77.0
BraA04t17851Z Brassica rapa HOM05D008517 ORTHO05D010482 7.9e-119 431.0 325 73.8
BcaC02g08016 Brassica carinata HOM05D008517 ORTHO05D010482 8.7e-118 427.6 325 73.5
C04p59390 Brassica napus HOM05D008517 ORTHO05D010482 8.7e-118 427.6 325 73.5
BolC4t27447H Brassica oleracea HOM05D008517 ORTHO05D010482 8.7e-118 427.6 325 73.5
A04p23240 Brassica napus HOM05D008517 ORTHO05D010482 1.9e-117 426.4 325 73.8
BcaB06g28372 Brassica carinata HOM05D008517 ORTHO05D010482 1.1e-112 410.6 327 73.1
BcaB02g10328 Brassica carinata HOM05D008517 ORTHO05D010482 1.2e-111 407.1 305 73.1
A05p14960 Brassica napus HOM05D008517 ORTHO05D010482 1.6e-111 406.8 305 74.4
BraA05t20422Z Brassica rapa HOM05D008517 ORTHO05D010482 1.6e-111 406.8 305 74.4
BolC4t23540H Brassica oleracea HOM05D008517 ORTHO05D010482 1.0e-110 404.1 302 74.2
BcaC02g11142 Brassica carinata HOM05D008517 ORTHO05D010482 6.7e-110 401.4 302 73.8
C04p20010 Brassica napus HOM05D008517 ORTHO05D010482 6.7e-110 401.4 302 73.8
Aa31LG5G6260 Aethionema arabicum HOM05D008517 ORTHO05D010482 8.5e-81 304.7 310 57.7
THA.LOC104800796 Tarenaya hassleriana HOM05D008517 ORTHO05D010482 2.1e-47 193.7 213 48.8
Cpa.g.sc2.275 Carica papaya HOM05D008517 ORTHO05D010482 3.2e-43 179.9 192 47.9
Eucgr.J01845 Eucalyptus grandis HOM05D008517 ORTHO05D010482 4.0e-22 109.8 245 31.8
Manes.02G211300 Manihot esculenta HOM05D008517 ORTHO05D010482 3.8e-20 103.2 159 36.5
Lj6g0010191 Lotus japonicus HOM05D008517 ORTHO05D010482 6.4e-20 102.4 251 30.7
Rhsim13G0058200 Rhododendron simsii HOM05D008517 ORTHO05D010482 1.9e-19 100.9 187 31.0
Medtr3g062470 Medicago truncatula HOM05D008517 ORTHO05D010482 9.3e-19 98.6 191 31.4
TPR.G13887 Trifolium pratense HOM05D008517 ORTHO05D010482 1.6e-18 97.8 191 30.4
Atru.chr10.2344 Acer truncatum HOM05D008517 ORTHO05D010482 2.1e-18 97.4 204 29.9
Psat5g147520 Pisum sativum HOM05D008517 ORTHO05D010482 2.7e-18 97.1 190 31.1
CSS0018299 Camellia sinensis var. sinensis HOM05D008517 ORTHO05D010482 7.9e-18 95.5 250 29.2
Actinidia23156 Actinidia chinensis HOM05D000033 ORTHO05D000913 3.0e-17 93.6 250 26.4
Dinv12288 Davidia involucrata HOM05D008517 ORTHO05D010482 3.0e-17 93.6 245 30.6
arahy.Tifrunner.gnm1.ann1.Q24W9G Arachis hypogaea HOM05D008517 ORTHO05D010482 3.9e-17 93.2 241 27.0
TAR633G1539 Trochodendron aralioides HOM05D000050 ORTHO05D010482 5.1e-17 92.8 190 32.1
arahy.Tifrunner.gnm1.ann1.92WL97 Arachis hypogaea HOM05D008517 ORTHO05D010482 6.7e-17 92.4 241 27.0
PGR119G1844 Punica granatum HOM05D008517 ORTHO05D010482 1.1e-16 91.7 191 35.1
Lalb_Chr15g0085691 Lupinus albus HOM05D008517 ORTHO05D010482 3.3e-16 90.1 247 27.9
Glyma.18G051200 Glycine max HOM05D008517 ORTHO05D010482 1.6e-15 87.8 165 34.5
Lalb_Chr18g0054121 Lupinus albus HOM05D008517 ORTHO05D010482 4.8e-15 86.3 209 28.2
Lj2A1104T76 Lonicera japonica HOM05D008517 ORTHO05D010482 8.1e-15 85.5 225 28.9
Phvul.006G080100 Phaseolus vulgaris HOM05D008517 ORTHO05D010482 8.1e-15 85.5 191 31.9
VMungo0540G2173 Vigna mungo HOM05D008517 ORTHO05D010482 1.8e-14 84.3 190 30.5
Glyma.11G199600 Glycine max HOM05D008517 ORTHO05D010482 1.5e-13 81.3 254 28.0
ClCG03G000030 Citrullus lanatus HOM05D008517 ORTHO05D010482 2.2e-12 77.4 246 24.8
MD11G1051900 Malus domestica HOM05D016692 ORTHO05D010482 4.9e-12 76.3 239 26.8
MELO3C020481.2 Cucumis melo HOM05D008517 ORTHO05D010482 1.9e-11 74.3 239 25.5
MSTRG.12716 Avicennia marina HOM05D008517 ORTHO05D010482 7.1e-11 72.4 240 26.2
FAN21G3878 Fragaria x ananassa HOM05D016692 ORTHO05D010482 2.1e-10 70.9 283 27.2
Sed0007690 Sechium edule HOM05D008517 ORTHO05D010482 2.7e-10 70.5 192 29.7
FvH4_3g40830 Fragaria vesca HOM05D016692 ORTHO05D010482 7.9e-10 68.9 251 27.1
FAN11G0742 Fragaria x ananassa HOM05D016692 ORTHO05D010482 3.0e-09 67.0 251 27.1
FAN25G0531 Fragaria x ananassa HOM05D000033 ORTHO05D000913 5.1e-09 66.2 296 27.0
Nn5g26812 Nelumbo nucifera HOM05D008517 ORTHO05D010482 1.1e-06 58.5 154 29.9
Sabra14G0069000 Salix brachista HOM05D005178 ORTHO05D006123 5.3e-06 56.2 163 23.3
Aa31LG1G27670 Aethionema arabicum HOM05D005178 ORTHO05D006123 6.9e-06 55.8 165 28.5
CANSAT54G1933 Cannabis sativa HOM05D008517 ORTHO05D010482 6.9e-06 55.8 240 22.5
Lsat_1_v5_gn_8_99661 Lactuca sativa HOM05D008517 ORTHO05D010482 6.9e-06 55.8 161 29.2
Nitab4.5_0005619g0010 Nicotiana tabacum HOM05D005178 ORTHO05D006123 9.0e-06 55.5 157 22.3


User provided reference genes

Program Settings