Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G30200 Arabidopsis thaliana HOM05D004740 ORTHO05D005991 1.1e-207 726.5 394 100.0
Carub.0004s1135 Capsella rubella HOM05D004740 ORTHO05D005991 9.2e-194 680.2 394 93.7
CARHR123500 Cardamine hirsuta HOM05D004740 ORTHO05D005991 3.5e-193 678.3 395 93.4
Sp4g12790 Schrenkiella parvula HOM05D004740 ORTHO05D005991 6.1e-190 667.5 400 92.2
AL4G25030 Arabidopsis lyrata HOM05D004740 ORTHO05D005991 6.8e-189 664.1 368 96.7
Thhalv10016751m.g Eutrema salsugineum HOM05D004740 ORTHO05D005991 2.3e-184 649.0 400 91.0
Aa31LG5G6500 Aethionema arabicum HOM05D004740 ORTHO05D005991 2.8e-182 642.1 406 88.2
BolC3t14364H Brassica oleracea HOM05D004740 ORTHO05D005991 3.4e-180 635.2 385 90.9
BraA04t17832Z Brassica rapa HOM05D004740 ORTHO05D005991 1.7e-176 622.9 397 87.7
BcaB02g10307 Brassica carinata HOM05D004740 ORTHO05D005991 1.1e-175 620.2 400 87.5
BcaC02g11103 Brassica carinata HOM05D004740 ORTHO05D005991 1.5e-175 619.8 397 87.9
C04p20390 Brassica napus HOM05D004740 ORTHO05D005991 4.3e-175 618.2 399 88.5
A05p15240 Brassica napus HOM05D004740 ORTHO05D005991 1.6e-174 616.3 398 87.7
BolC4t23568H Brassica oleracea HOM05D004740 ORTHO05D005991 3.6e-174 615.1 396 87.4
C04p59110 Brassica napus HOM05D004740 ORTHO05D005991 4.7e-174 614.8 397 86.9
BolC4t27422H Brassica oleracea HOM05D004740 ORTHO05D005991 4.7e-174 614.8 397 86.9
BraA05t20443Z Brassica rapa HOM05D004740 ORTHO05D005991 8.1e-174 614.0 396 87.9
BcaC02g08041 Brassica carinata HOM05D004740 ORTHO05D005991 8.9e-173 610.5 397 86.1
BcaB06g28350 Brassica carinata HOM05D004740 ORTHO05D005991 2.6e-172 609.0 399 85.2
THA.LOC104826277 Tarenaya hassleriana HOM05D004740 ORTHO05D005991 2.9e-171 605.5 368 87.0
arahy.Tifrunner.gnm1.ann1.MX8U3M Arachis hypogaea HOM05D004740 ORTHO05D005991 1.5e-164 583.2 395 81.5
arahy.Tifrunner.gnm1.ann1.T9C115 Arachis hypogaea HOM05D004740 ORTHO05D005991 1.5e-164 583.2 395 80.8
THA.LOC104800771 Tarenaya hassleriana HOM05D004740 ORTHO05D005991 3.4e-164 582.0 371 84.1
Potri.009G077800 Populus trichocarpa HOM05D004740 ORTHO05D005991 3.8e-163 578.6 390 81.3
arahy.Tifrunner.gnm1.ann1.FJ253B Arachis hypogaea HOM05D004740 ORTHO05D005991 8.4e-163 577.4 395 80.8
BcaC01g06023 Brassica carinata HOM05D004740 ORTHO05D005991 1.1e-162 577.0 369 87.0
QL01p026440 Quercus lobata HOM05D004740 ORTHO05D005991 1.1e-162 577.0 403 80.1
BcaB01g04122 Brassica carinata HOM05D004740 ORTHO05D005991 5.4e-162 574.7 366 87.4
CsaV3_1G036540 Cucumis sativus L. HOM05D004740 ORTHO05D005991 9.2e-162 573.9 366 85.2
CiPaw.13G069800 Carya illinoinensis HOM05D004740 ORTHO05D005991 1.2e-161 573.5 382 81.4
MELO3C020514.2 Cucumis melo HOM05D004740 ORTHO05D005991 1.2e-161 573.5 388 81.7
Duzib168G1324 Durio zibethinus HOM05D004740 ORTHO05D005991 3.5e-161 572.0 395 81.0
Lalb_Chr18g0051371 Lupinus albus HOM05D004740 ORTHO05D005991 5.1e-160 568.2 397 78.8
Peaxi162Scf00055g00057 Petunia axillaris HOM05D004740 ORTHO05D005991 5.1e-160 568.2 364 82.7
Haze_24407 Corylus avellana HOM05D004740 ORTHO05D005991 1.5e-159 566.6 380 81.3
COL.COLO4_11143 Corchorus olitorius HOM05D004740 ORTHO05D005991 3.3e-159 565.5 365 84.7
MD11G1056800 Malus domestica HOM05D004740 ORTHO05D005991 3.3e-159 565.5 392 79.1
Gohir.A03G025700 Gossypium hirsutum HOM05D004740 ORTHO05D005991 4.3e-159 565.1 388 81.4
Sed0001589 Sechium edule HOM05D004740 ORTHO05D005991 4.3e-159 565.1 383 80.2
Gorai.003G150000 Gossypium raimondii HOM05D004740 ORTHO05D005991 5.6e-159 564.7 367 83.9
Sabra09G0059400 Salix brachista HOM05D004740 ORTHO05D005991 5.6e-159 564.7 393 78.9
Thecc.09G357100 Theobroma cacao HOM05D004740 ORTHO05D005991 5.6e-159 564.7 395 79.7
FvH4_3g39690 Fragaria vesca HOM05D004740 ORTHO05D005991 7.3e-159 564.3 390 78.5
Nitab4.5_0002737g0070 Nicotiana tabacum HOM05D004740 ORTHO05D005991 9.6e-159 563.9 380 81.1
vmacro02923 Vaccinium macrocarpon HOM05D004740 ORTHO05D005991 2.1e-158 562.8 396 76.8
CSS0045632 Camellia sinensis var. sinensis HOM05D004740 ORTHO05D005991 4.7e-158 561.6 409 75.8
CANSAT54G2578 Cannabis sativa HOM05D004740 ORTHO05D005991 6.2e-158 561.2 389 78.1
Gohir.D03G142800 Gossypium hirsutum HOM05D004740 ORTHO05D005991 6.2e-158 561.2 388 80.9
Dinv28694 Davidia involucrata HOM05D004740 ORTHO05D005991 8.1e-158 560.8 416 74.3
TAR623G0659 Trochodendron aralioides HOM05D004740 ORTHO05D005991 1.1e-157 560.5 410 76.3
RcHm_v2.0_Chr5g0071571 Rosa chinensis HOM05D004740 ORTHO05D005991 1.4e-157 560.1 387 77.8
TWI75G0989 Tripterygium wilfordii HOM05D004740 ORTHO05D005991 1.4e-157 560.1 400 77.5
Nitab4.5_0001121g0110 Nicotiana tabacum HOM05D004740 ORTHO05D005991 1.8e-157 559.7 385 79.7
Rhsim13G0064700 Rhododendron simsii HOM05D004740 ORTHO05D005991 1.8e-157 559.7 396 76.5
MD03G1055800 Malus domestica HOM05D004740 ORTHO05D005991 2.4e-157 559.3 390 79.5
Manes.18G127700 Manihot esculenta HOM05D004740 ORTHO05D005991 2.4e-157 559.3 407 77.1
ClCG03G000380 Citrullus lanatus HOM05D004740 ORTHO05D005991 9.0e-157 557.4 417 74.8
Ah.15g096090 Amaranthus hybridus HOM05D004740 ORTHO05D005991 1.5e-156 556.6 378 79.4
Solyc01g006980.4 Solanum lycopersicum HOM05D004740 ORTHO05D005991 1.5e-156 556.6 366 80.9
Glyma.18G057700 Glycine max HOM05D004740 ORTHO05D005991 2.0e-156 556.2 364 82.7
Prupe.6G048900 Prunus persica HOM05D004740 ORTHO05D005991 2.0e-156 556.2 388 78.6
FAN21G3316 Fragaria x ananassa HOM05D004740 ORTHO05D005991 5.8e-156 554.7 413 74.6
FAN21G3649 Fragaria x ananassa HOM05D004740 ORTHO05D005991 5.8e-156 554.7 413 74.6
Lj6g0008641 Lotus japonicus HOM05D004740 ORTHO05D005991 5.8e-156 554.7 364 82.7
Sopen01g002970 Solanum pennellii HOM05D004740 ORTHO05D005991 5.8e-156 554.7 366 80.3
PGSC0003DMG400021362 Solanum tuberosum HOM05D004740 ORTHO05D005991 5.8e-156 554.7 366 80.9
Lalb_Chr15g0083211 Lupinus albus HOM05D004740 ORTHO05D005991 7.6e-156 554.3 388 79.4
Ciclev10028558m.g Citrus clementina HOM05D004740 ORTHO05D005991 1.3e-155 553.5 409 75.8
Cfa011772 Carpinus fangiana HOM05D004740 ORTHO05D005991 2.2e-155 552.7 362 82.6
Lj2A1092T52 Lonicera japonica HOM05D004740 ORTHO05D005991 2.9e-155 552.4 376 77.9
Migut.N00764 Erythranthe guttata HOM05D004740 ORTHO05D005991 4.9e-155 551.6 377 79.0
FAN11G1726 Fragaria x ananassa HOM05D004740 ORTHO05D005991 6.4e-155 551.2 413 74.1
FAN16G0900 Fragaria x ananassa HOM05D004740 ORTHO05D005991 6.4e-155 551.2 413 74.1
PGR102G2346 Punica granatum HOM05D004740 ORTHO05D005991 6.4e-155 551.2 406 74.6
Phvul.006G073300 Phaseolus vulgaris HOM05D004740 ORTHO05D005991 1.1e-154 550.4 394 77.7
HanXRQChr01g0012131 Helianthus annuus HOM05D004740 ORTHO05D005991 1.9e-154 549.7 397 75.3
EL10Ac7g15913 Beta vulgaris HOM05D004740 ORTHO05D005991 5.4e-154 548.1 380 78.2
Psat5g153440 Pisum sativum HOM05D004740 ORTHO05D005991 5.4e-154 548.1 380 78.4
arahy.Tifrunner.gnm1.ann1.C8ZV0S Arachis hypogaea HOM05D004740 ORTHO05D005991 1.6e-153 546.6 375 80.5
PSO339G6109 Papaver somniferum HOM05D004740 ORTHO05D005991 3.5e-153 545.4 400 75.2
MSTRG.17889 Avicennia marina HOM05D004740 ORTHO05D005991 4.6e-153 545.0 386 76.2
Glyma.11G164500 Glycine max HOM05D004740 ORTHO05D005991 6.0e-153 544.7 363 80.4
C03p19860 Brassica napus HOM05D004740 ORTHO05D005991 1.0e-152 543.9 336 89.6
PSO801G0690 Papaver somniferum HOM05D004740 ORTHO05D005991 1.0e-152 543.9 407 74.2
Ca_15002_v3 Cicer arietinum L. HOM05D004740 ORTHO05D005991 1.3e-152 543.5 384 78.4
FAN25G0671 Fragaria x ananassa HOM05D004740 ORTHO05D005991 1.3e-152 543.5 412 73.5
CAN.G911.42 Capsicum annuum HOM05D004740 ORTHO05D005991 1.7e-152 543.1 384 77.6
SalBow2G1640 Salvia bowleyana HOM05D004740 ORTHO05D005991 1.7e-152 543.1 397 75.1
VMungo0540G0639 Vigna mungo HOM05D004740 ORTHO05D005991 1.7e-152 543.1 363 82.1
Medtr3g031380 Medicago truncatula HOM05D004740 ORTHO05D005991 3.9e-152 542.0 394 75.6
Hund29009 Selenicereus undatus HOM05D004740 ORTHO05D005991 5.1e-152 541.6 359 79.7
Hund29013 Selenicereus undatus HOM05D004740 ORTHO05D005991 5.1e-152 541.6 359 79.7
SGA_v2.0_scaffold146G36123 Striga asiatica HOM05D004740 ORTHO05D005991 1.1e-151 540.4 377 77.7
DCAR_018228 Daucus carota HOM05D004740 ORTHO05D005991 2.5e-151 539.3 384 76.3
Eucgr.J01859 Eucalyptus grandis HOM05D004740 ORTHO05D005991 2.5e-151 539.3 365 80.0
Sc12g0002010 Simmondsia chinensis HOM05D004740 ORTHO05D005991 4.3e-151 538.5 393 76.1
Aqoxy2G00789 Aquilegia oxysepala HOM05D004740 ORTHO05D005991 5.6e-151 538.1 396 74.7
Nn2g13251 Nelumbo nucifera HOM05D004740 ORTHO05D005991 1.4e-149 533.5 391 77.2
CDE06G2756 Ceratophyllum demersum HOM05D004740 ORTHO05D005991 5.3e-149 531.6 405 73.8
TAR633G1387 Trochodendron aralioides HOM05D004740 ORTHO05D005991 5.3e-149 531.6 328 85.1
A04p22970 Brassica napus HOM05D004740 ORTHO05D005991 6.9e-149 531.2 347 86.2
AUR62001878 Chenopodium quinoa HOM05D004740 ORTHO05D005991 7.6e-148 527.7 379 75.2
Zm00001eb013760 Zea mays HOM05D004740 ORTHO05D005991 1.3e-147 526.9 335 81.8
Os03g0297400 Oryza sativa ssp. japonica HOM05D004740 ORTHO05D005991 1.7e-147 526.6 373 76.1
ECA248G3413 Erigeron canadensis HOM05D004740 ORTHO05D005991 4.9e-147 525.0 389 73.8
HPP92_013770 Vanilla planifolia HOM05D004740 ORTHO05D005991 6.4e-147 524.6 362 77.1
HanXRQChr01g0012161 Helianthus annuus HOM05D004740 ORTHO05D005991 8.4e-147 524.2 377 75.6
AUR62009675 Chenopodium quinoa HOM05D004740 ORTHO05D005991 1.4e-146 523.5 379 74.1
unitig_60.g25555 Utricularia gibba HOM05D004740 ORTHO05D005991 7.1e-146 521.2 385 73.5
MBI05_g35601_MAGBIO Magnolia biondii HOM05D004740 ORTHO05D005991 2.8e-142 509.2 415 70.1
Lsat_1_v5_gn_5_174621 Lactuca sativa HOM05D004740 ORTHO05D005991 1.4e-141 506.9 410 69.0
Cc01_g14810 Coffea canephora HOM05D004740 ORTHO05D005991 1.8e-141 506.5 297 87.9
TPR.G35611 Trifolium pratense HOM05D004740 ORTHO05D005991 5.3e-141 505.0 307 85.0
SEGI_23058 Sequoiadendron giganteum HOM05D004740 ORTHO05D005991 1.2e-140 503.8 390 71.3
CiPaw.14G054500 Carya illinoinensis HOM05D004740 ORTHO05D005991 1.3e-139 500.4 297 85.9
ATR0594G208 Amborella trichopoda HOM05D004740 ORTHO05D005991 9.3e-138 494.2 297 85.5
Mapoly0009s0078 Marchantia polymorpha HOM05D004740 ORTHO05D005991 4.6e-137 491.9 328 77.4
Sed0003355 Sechium edule HOM05D004740 ORTHO05D005991 5.1e-136 488.4 314 81.2
Pp3c20_19160 Physcomitrium patens HOM05D004740 ORTHO05D005991 1.5e-135 486.9 377 70.8
Actinidia32613 Actinidia chinensis HOM05D004740 ORTHO05D005991 2.1e-134 483.0 377 72.4
AagrBONN_evm.TU.Sc2ySwM_228.2654 Anthoceros agrestis HOM05D004740 ORTHO05D005991 6.9e-133 478.0 323 74.3
Atru.chr3.4126 Acer truncatum HOM05D004740 ORTHO05D005991 3.2e-130 469.2 406 69.0
SMO200G0259 Selaginella moellendorffii HOM05D004740 ORTHO05D005991 5.1e-128 461.8 357 68.9
SHI19203 Sapria himalayana HOM05D004740 ORTHO05D005991 2.0e-124 449.9 418 62.7
arahy.Tifrunner.gnm1.ann1.R7F6LC Arachis hypogaea HOM05D004740 ORTHO05D005991 2.4e-117 426.4 272 84.2
Cpa.g.sc2.364 Carica papaya HOM05D004740 ORTHO05D005991 3.4e-116 422.5 246 90.2
Potri.001G282600 Populus trichocarpa HOM05D004740 ORTHO05D005991 1.9e-114 416.8 346 70.2
Cre14.g621650 Chlamydomonas reinhardtii HOM05D004740 ORTHO05D005991 2.7e-113 412.9 334 66.8
Nn2g10995 Nelumbo nucifera HOM05D004740 ORTHO05D005991 4.7e-113 412.1 400 63.5
PRCOL_00005899 Prasinoderma coloniale HOM05D004740 ORTHO05D005991 1.0e-107 394.4 285 70.5
CBR_g33923 Chara braunii HOM05D004740 ORTHO05D005991 1.8e-104 383.6 375 57.6
MCO01G413 Micromonas commoda HOM05D004740 ORTHO05D005991 4.2e-98 362.5 353 56.7
GSVIVG01024639001 Vitis vinifera HOM05D004740 ORTHO05D005991 1.7e-91 340.5 198 89.4
A03p16880 Brassica napus HOM05D004740 ORTHO05D005991 3.0e-88 329.7 198 90.4
BraA03t10976Z Brassica rapa HOM05D004740 ORTHO05D005991 3.0e-88 329.7 198 90.4
Oeu005355.3 Olea europaea HOM05D003290 ORTHO05D005991 1.6e-73 280.8 166 85.5
Actinidia23202 Actinidia chinensis HOM05D004740 ORTHO05D005991 2.1e-65 253.8 370 47.8
PRCOL_00000466 Prasinoderma coloniale HOM05D004740 ORTHO05D005991 3.6e-65 253.1 307 45.9
MCO04G051 Micromonas commoda HOM05D004740 ORTHO05D005991 7.8e-60 235.3 320 43.4
Cre02.g088250 Chlamydomonas reinhardtii HOM05D004740 ORTHO05D005991 5.8e-55 219.2 328 42.4
Actinidia02620 Actinidia chinensis HOM05D004740 ORTHO05D005991 2.2e-54 217.2 154 76.0
GSVIVG01024638001 Vitis vinifera HOM05D004740 ORTHO05D005991 6.4e-54 215.7 130 83.8
Nitab4.5_0006359g0020 Nicotiana tabacum HOM05D004740 ORTHO05D005991 7.3e-50 202.2 178 64.0
COL.COLO4_24546 Corchorus olitorius HOM05D004740 ORTHO05D008255 4.0e-48 196.4 200 62.0
Nitab4.5_0006126g0030 Nicotiana tabacum HOM05D004740 ORTHO05D005991 4.9e-38 162.9 213 49.8
Nitab4.5_0000644g0120 Nicotiana tabacum HOM05D004740 ORTHO05D005991 6.4e-38 162.5 149 61.1
Oeu025052.1 Olea europaea HOM05D004740 ORTHO05D005991 4.8e-33 146.4 126 65.9
Zm00001eb396720 Zea mays HOM05D004740 ORTHO05D444996 5.8e-31 139.4 80 88.8
HPP92_013838 Vanilla planifolia HOM05D004740 ORTHO05D005991 2.3e-27 127.5 88 72.7
MBI10_g37352_MAGBIO Magnolia biondii HOM05D004740 ORTHO05D241996 2.8e-17 94.0 75 68.0
Nitab4.5_0000644g0100 Nicotiana tabacum HOM05D004740 ORTHO05D284956 4.5e-15 86.7 48 91.7
VMungo0331G0938 Vigna mungo HOM05D000577 ORTHO05D001093 4.2e-13 80.1 62 69.4
Carub.0004s1136 Capsella rubella HOM05D004740 ORTHO05D005991 7.1e-13 79.3 42 85.7
HPP92_012003 Vanilla planifolia HOM05D004740 ORTHO05D429499 7.1e-13 79.3 90 51.1
COL.COLO4_37924 Corchorus olitorius HOM05D004740 ORTHO05D005991 7.4e-10 69.3 81 61.7
MBI15_g35007_MAGBIO Magnolia biondii HOM05D000363 ORTHO05D017376 1.4e-08 65.1 43 74.4


User provided reference genes

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