Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G29210 Arabidopsis thaliana HOM05D005166 ORTHO05D006120 0.0e+00 1100.5 879 100.0
AL4G23770 Arabidopsis lyrata HOM05D005166 ORTHO05D006120 9.8e-212 741.1 891 73.4
Sp4g12020 Schrenkiella parvula HOM05D005166 ORTHO05D006120 5.8e-148 529.3 903 62.3
BolC4t23701H Brassica oleracea HOM05D005166 ORTHO05D006120 7.6e-140 502.3 903 60.9
C04p21810 Brassica napus HOM05D005166 ORTHO05D006120 3.8e-139 500.0 903 59.9
Thhalv10016250m.g Eutrema salsugineum HOM05D005166 ORTHO05D006120 2.4e-125 454.1 904 62.2
BcaB02g10233 Brassica carinata HOM05D005166 ORTHO05D006120 2.6e-124 450.7 876 60.3
Aa31LG5G7110 Aethionema arabicum HOM05D005166 ORTHO05D006120 4.1e-101 373.6 907 59.5
THA.LOC104800686 Tarenaya hassleriana HOM05D005166 ORTHO05D006120 9.1e-101 372.5 956 56.0
BraA05t20522Z Brassica rapa HOM05D005166 ORTHO05D006120 2.3e-88 331.3 906 55.7
A05p16120 Brassica napus HOM05D005166 ORTHO05D006120 6.4e-78 296.6 906 54.1
Thecc.09G315500 Theobroma cacao HOM05D005166 ORTHO05D006120 4.9e-70 270.4 278 61.9
Duzib168G0713 Durio zibethinus HOM05D005166 ORTHO05D006120 6.4e-70 270.0 270 62.6
Atru.chr3.3993_Atru.chr3.3994 Acer truncatum HOM05D005166 ORTHO05D006120 5.4e-69 266.9 269 61.3
COL.COLO4_18578 Corchorus olitorius HOM05D005166 ORTHO05D006120 4.6e-68 263.8 232 65.9
Potri.009G036900 Populus trichocarpa HOM05D005166 ORTHO05D006120 7.8e-68 263.1 270 61.9
GSVIVG01024906001 Vitis vinifera HOM05D005166 ORTHO05D006120 1.3e-67 262.3 270 58.9
Gohir.D13G232000 Gossypium hirsutum HOM05D005166 ORTHO05D006120 2.3e-67 261.5 259 61.4
Nn2g11213 Nelumbo nucifera HOM05D005166 ORTHO05D006120 5.0e-67 260.4 271 59.0
Dinv42991 Davidia involucrata HOM05D005166 ORTHO05D006120 8.6e-67 259.6 255 63.9
Dinv43106 Davidia involucrata HOM05D005166 ORTHO05D006120 8.6e-67 259.6 255 63.9
Carub.0004s1023 Capsella rubella HOM05D005166 ORTHO05D006120 1.1e-66 259.2 159 86.2
Gorai.013G262700 Gossypium raimondii HOM05D005166 ORTHO05D006120 1.9e-66 258.5 271 59.8
MD03G1086100 Malus domestica HOM05D005166 ORTHO05D006120 2.5e-66 258.1 273 59.3
Rhsim13G0077000 Rhododendron simsii HOM05D005166 ORTHO05D006120 3.3e-66 257.7 234 63.2
Glyma.11G136000 Glycine max HOM05D005166 ORTHO05D006120 5.6e-66 256.9 243 61.7
Dinv17047 Davidia involucrata HOM05D005166 ORTHO05D006120 7.3e-66 256.5 215 66.5
Phvul.011G061700 Phaseolus vulgaris HOM05D005166 ORTHO05D006120 1.2e-65 255.8 242 60.7
FvH4_3g36942 Fragaria vesca HOM05D005166 ORTHO05D006120 1.6e-65 255.4 251 62.2
Hma1.2p1_1664F.1_g296420 Hydrangea macrophylla HOM05D005166 ORTHO05D006120 1.6e-65 255.4 331 52.3
FAN16G3680 Fragaria x ananassa HOM05D005166 ORTHO05D006120 3.6e-65 254.2 268 59.7
Prupe.6G070300 Prunus persica HOM05D005166 ORTHO05D006120 4.7e-65 253.8 274 56.6
VMungo1127G2033 Vigna mungo HOM05D005166 ORTHO05D006120 6.2e-65 253.4 242 59.9
Manes.01G169300 Manihot esculenta HOM05D005166 ORTHO05D006120 1.1e-64 252.7 270 59.3
FAN25G3327 Fragaria x ananassa HOM05D005166 ORTHO05D006120 1.4e-64 252.3 279 58.4
CAN.G3.46 Capsicum annuum HOM05D005166 ORTHO05D006120 1.8e-64 251.9 252 61.9
FAN11G2353 Fragaria x ananassa HOM05D005166 ORTHO05D006120 1.8e-64 251.9 254 61.0
Gohir.A13G226600 Gossypium hirsutum HOM05D005166 ORTHO05D006120 1.8e-64 251.9 253 61.7
vmacro03027 Vaccinium macrocarpon HOM05D005166 ORTHO05D006120 3.1e-64 251.1 225 64.0
FAN21G1054 Fragaria x ananassa HOM05D005166 ORTHO05D006120 4.0e-64 250.8 269 59.1
Medtr4g064740 Medicago truncatula HOM05D005166 ORTHO05D006120 5.2e-64 250.4 269 57.6
Glyma.12G059700 Glycine max HOM05D005166 ORTHO05D006120 6.8e-64 250.0 275 56.7
Dinv34287 Davidia involucrata HOM05D005166 ORTHO05D006120 8.9e-64 249.6 277 56.7
Nn2g13459 Nelumbo nucifera HOM05D005166 ORTHO05D006120 5.8e-63 246.9 267 58.8
Cc01_g13350 Coffea canephora HOM05D005166 ORTHO05D006120 7.5e-63 246.5 227 63.0
Lalb_Chr01g0003471 Lupinus albus HOM05D005166 ORTHO05D006120 9.8e-63 246.1 268 58.2
HanXRQChr01g0001871 Helianthus annuus HOM05D005166 ORTHO05D006120 1.3e-62 245.7 231 62.3
Potri.001G244600 Populus trichocarpa HOM05D005166 ORTHO05D006120 2.2e-62 245.0 209 66.0
RcHm_v2.0_Chr5g0066361 Rosa chinensis HOM05D005166 ORTHO05D006120 2.9e-62 244.6 265 57.7
Sabra09G0026100 Salix brachista HOM05D005166 ORTHO05D006120 6.4e-62 243.4 271 58.7
Ciclev10030390m.g Citrus clementina HOM05D005166 ORTHO05D006120 8.3e-62 243.0 269 58.7
Ca_20616_v3 Cicer arietinum L. HOM05D005166 ORTHO05D006120 1.1e-61 242.7 207 62.3
CsaV3_1G034540 Cucumis sativus L. HOM05D005166 ORTHO05D006120 1.4e-61 242.3 237 62.0
PSO339G5769 Papaver somniferum HOM05D005166 ORTHO05D006120 1.9e-61 241.9 257 58.4
Aqoxy2G02310 Aquilegia oxysepala HOM05D005166 ORTHO05D006120 3.2e-61 241.1 256 59.8
Lj3g0025501 Lotus japonicus HOM05D005166 ORTHO05D006120 3.2e-61 241.1 248 59.7
Nitab4.5_0005248g0020 Nicotiana tabacum HOM05D005166 ORTHO05D006120 4.1e-61 240.7 231 61.9
Sopen09g013470 Solanum pennellii HOM05D005166 ORTHO05D006120 7.1e-61 240.0 263 57.8
arahy.Tifrunner.gnm1.ann1.L8ZXQA Arachis hypogaea HOM05D005166 ORTHO05D006120 9.2e-61 239.6 222 62.6
Haze_24170 Corylus avellana HOM05D005166 ORTHO05D006120 1.6e-60 238.8 254 60.6
Solyc09g030390.3 Solanum lycopersicum HOM05D005166 ORTHO05D006120 2.1e-60 238.4 281 55.9
Psat7g210320 Pisum sativum HOM05D005166 ORTHO05D006120 4.6e-60 237.3 261 55.6
Sed0011931 Sechium edule HOM05D005166 ORTHO05D006120 6.0e-60 236.9 263 57.0
Hund04921 Selenicereus undatus HOM05D005166 ORTHO05D006120 6.0e-60 236.9 172 71.5
Haze_24175 Corylus avellana HOM05D005166 ORTHO05D006120 1.0e-59 236.1 255 60.0
Eucgr.B02307 Eucalyptus grandis HOM05D005166 ORTHO05D006120 1.0e-59 236.1 278 56.1
DCAR_005942 Daucus carota HOM05D005166 ORTHO05D006120 2.3e-59 235.0 138 86.2
HanXRQChr08g0237471 Helianthus annuus HOM05D005166 ORTHO05D006120 3.0e-59 234.6 261 57.1
Peaxi162Scf00676g00220 Petunia axillaris HOM05D005166 ORTHO05D006120 3.0e-59 234.6 275 54.9
Sabra16G0148400 Salix brachista HOM05D005166 ORTHO05D006120 3.0e-59 234.6 209 64.1
CiPaw.13G089200 Carya illinoinensis HOM05D005166 ORTHO05D006120 3.9e-59 234.2 225 61.3
CDE07G0344 Ceratophyllum demersum HOM05D005166 ORTHO05D006120 8.6e-59 233.0 275 54.2
Lsat_1_v5_gn_9_24820 Lactuca sativa HOM05D005166 ORTHO05D006120 8.6e-59 233.0 231 60.6
PGSC0003DMG400027986 Solanum tuberosum HOM05D005166 ORTHO05D006120 8.6e-59 233.0 283 53.4
Lalb_Chr19g0137981 Lupinus albus HOM05D005166 ORTHO05D006120 1.9e-58 231.9 323 50.2
Nitab4.5_0001999g0010 Nicotiana tabacum HOM05D005166 ORTHO05D006120 2.5e-58 231.5 279 54.5
arahy.Tifrunner.gnm1.ann1.SP769B Arachis hypogaea HOM05D005166 ORTHO05D006120 9.5e-58 229.6 282 53.9
Cpa.g.sc81.97 Carica papaya HOM05D005166 ORTHO05D006120 1.6e-57 228.8 210 61.9
SGA_v2.0_scaffold111G31544 Striga asiatica HOM05D005166 ORTHO05D006120 4.7e-57 227.3 268 55.6
AUR62001736 Chenopodium quinoa HOM05D005166 ORTHO05D006120 6.2e-57 226.9 144 81.9
Os03g0270200 Oryza sativa ssp. japonica HOM05D005166 ORTHO05D006120 1.1e-56 226.1 156 77.6
HanXRQChr08g0237371 Helianthus annuus HOM05D005166 ORTHO05D006120 1.8e-56 225.3 274 54.4
ECA247G0723 Erigeron canadensis HOM05D005166 ORTHO05D006120 3.1e-56 224.6 304 51.3
Lalb_Chr03g0026441 Lupinus albus HOM05D005166 ORTHO05D006120 4.0e-56 224.2 280 53.6
ATR0559G187 Amborella trichopoda HOM05D005166 ORTHO05D006120 5.2e-56 223.8 243 58.8
AUR62020041 Chenopodium quinoa HOM05D005166 ORTHO05D006120 5.2e-56 223.8 137 83.9
MD11G1094700 Malus domestica HOM05D005166 ORTHO05D006120 5.2e-56 223.8 955 44.6
MBI14_g11598_MAGBIO Magnolia biondii HOM05D005166 ORTHO05D006120 8.9e-56 223.0 239 59.4
PGR102G2168 Punica granatum HOM05D005166 ORTHO05D006120 3.4e-55 221.1 266 54.9
HPP92_012608 Vanilla planifolia HOM05D005166 ORTHO05D006120 7.6e-55 219.9 140 78.6
Ah.08g220070 Amaranthus hybridus HOM05D005166 ORTHO05D006120 2.2e-54 218.4 265 56.2
MSTRG.21221 Avicennia marina HOM05D005166 ORTHO05D006120 6.4e-54 216.9 262 53.8
SEGI_12829 Sequoiadendron giganteum HOM05D005166 ORTHO05D006120 8.4e-54 216.5 140 77.9
EL10Ac7g16070 Beta vulgaris HOM05D005166 ORTHO05D006120 4.1e-53 214.2 248 55.6
Migut.D00877 Erythranthe guttata HOM05D005166 ORTHO05D006120 5.4e-53 213.8 248 56.9
AagrBONN_evm.TU.Sc2ySwM_117.3439 Anthoceros agrestis HOM05D005166 ORTHO05D006120 7.1e-53 213.4 244 54.5
Pp3c3_30240 Physcomitrium patens HOM05D005166 ORTHO05D006120 7.1e-53 213.4 257 52.5
Pp3c3_30241 Physcomitrium patens HOM05D005166 ORTHO05D006120 7.1e-53 213.4 257 52.5
Pp3c10_18390 Physcomitrium patens HOM05D005166 ORTHO05D006120 1.0e-51 209.5 233 54.5
Mapoly0063s0002 Marchantia polymorpha HOM05D005166 ORTHO05D006120 1.7e-51 208.8 131 77.9
Carub.0004s1024 Capsella rubella HOM05D005166 ORTHO05D006120 1.1e-50 206.1 726 57.7
Zm00001eb012100 Zea mays HOM05D005166 ORTHO05D006120 3.3e-50 204.5 270 53.7
QL01p029224 Quercus lobata HOM05D005166 ORTHO05D006120 3.6e-49 201.1 940 44.3
SMO144G0189 Selaginella moellendorffii HOM05D005166 ORTHO05D006120 4.7e-49 200.7 139 73.4
SHI05908 Sapria himalayana HOM05D005166 ORTHO05D006120 3.1e-48 198.0 279 49.1
TAR636G0138 Trochodendron aralioides HOM05D005166 ORTHO05D006120 4.0e-48 197.6 965 43.1
CDE06G0141 Ceratophyllum demersum HOM05D005166 ORTHO05D006120 1.5e-47 195.7 112 85.7
CBR_g50691 Chara braunii HOM05D005166 ORTHO05D006120 5.8e-47 193.7 171 62.6
TPR.G23607 Trifolium pratense HOM05D005166 ORTHO05D006120 1.3e-46 192.6 972 45.4
CARHR122470 Cardamine hirsuta HOM05D005166 ORTHO05D006120 9.3e-45 186.4 732 52.7
SHI31247 Sapria himalayana HOM05D005166 ORTHO05D006120 1.2e-44 186.0 166 63.3
TAR633G1610 Trochodendron aralioides HOM05D005166 ORTHO05D006120 2.7e-44 184.9 965 43.8
CSS0046995 Camellia sinensis var. sinensis HOM05D005166 ORTHO05D006120 6.6e-43 180.3 921 44.6
Sc12g0001240 Simmondsia chinensis HOM05D005166 ORTHO05D006120 9.6e-42 176.4 252 49.6
TAR636G0020 Trochodendron aralioides HOM05D005166 ORTHO05D006120 2.8e-41 174.9 963 41.8
Sed0000001 Sechium edule HOM05D005166 ORTHO05D006120 6.9e-40 170.2 235 51.9
BcaB05g22029 Brassica carinata HOM05D005166 ORTHO05D006120 7.1e-37 160.2 153 60.8
unitig_746.g26715 Utricularia gibba HOM05D005166 ORTHO05D006120 1.2e-36 159.5 160 55.0
SHI33547 Sapria himalayana HOM05D005166 ORTHO05D006120 2.5e-34 151.8 185 49.7
SHI32778 Sapria himalayana HOM05D005166 ORTHO05D006120 1.1e-29 136.3 134 59.7
Actinidia33768 Actinidia chinensis HOM05D005166 ORTHO05D006120 3.0e-27 128.3 179 52.0
SHI07724 Sapria himalayana HOM05D005166 ORTHO05D006120 3.0e-27 128.3 178 47.2
SHI25075 Sapria himalayana HOM05D005166 ORTHO05D006120 4.3e-26 124.4 135 54.8
MCO11G283 Micromonas commoda HOM05D005166 ORTHO05D006120 5.8e-23 114.0 134 46.3
Cre16.g678050 Chlamydomonas reinhardtii HOM05D005166 ORTHO05D006120 1.2e-20 106.3 216 39.8
Zm00001eb397830 Zea mays HOM05D005166 ORTHO05D006120 2.9e-14 85.1 74 64.9
Zm00001eb284680 Zea mays HOM05D005166 ORTHO05D006120 1.2e-12 79.7 91 51.6
Zm00001eb222410 Zea mays HOM05D005166 ORTHO05D006120 2.1e-12 79.0 57 70.2
HanXRQChr08g0237461 Helianthus annuus HOM05D005166 ORTHO05D006120 4.1e-08 64.7 50 66.0
PRCOL_00003490 Prasinoderma coloniale HOM05D005166 ORTHO05D006120 6.9e-08 63.9 108 35.2


User provided reference genes

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