Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G29020 Arabidopsis thaliana HOM05D004332 ORTHO05D005116 1.3e-67 259.6 134 100.0
AL146U10030 Arabidopsis lyrata HOM05D004332 ORTHO05D005116 2.3e-64 248.8 134 96.3
CARHR122250 Cardamine hirsuta HOM05D004332 ORTHO05D005116 8.2e-62 240.4 134 91.8
Sp4g11830 Schrenkiella parvula HOM05D004332 ORTHO05D005116 7.0e-61 237.3 134 91.0
Carub.0004s1001 Capsella rubella HOM05D004332 ORTHO05D005116 9.1e-61 236.9 134 91.0
Aa31LG5G7210 Aethionema arabicum HOM05D004332 ORTHO05D005116 1.2e-60 236.5 134 89.6
Thhalv10017410m.g Eutrema salsugineum HOM05D004332 ORTHO05D005116 1.7e-59 232.6 134 89.6
BcaB02g10224 Brassica carinata HOM05D004332 ORTHO05D005116 6.5e-59 230.7 134 87.3
A07p19440 Brassica napus HOM05D004332 ORTHO05D005116 6.5e-59 230.7 134 87.3
BcaC02g11036 Brassica carinata HOM05D004332 ORTHO05D005116 8.5e-59 230.3 134 87.3
C04p21940 Brassica napus HOM05D004332 ORTHO05D005116 8.5e-59 230.3 134 87.3
BolC4t23714H Brassica oleracea HOM05D004332 ORTHO05D005116 8.5e-59 230.3 134 87.3
BraA07t29650Z Brassica rapa HOM05D004332 ORTHO05D005116 1.1e-58 229.9 134 86.6
BcaC02g08120 Brassica carinata HOM05D004332 ORTHO05D005116 2.5e-58 228.8 134 88.1
C04p58150 Brassica napus HOM05D004332 ORTHO05D005116 2.5e-58 228.8 134 88.1
A04p21990 Brassica napus HOM05D004332 ORTHO05D005116 3.2e-58 228.4 134 88.8
BcaB06g28270 Brassica carinata HOM05D004332 ORTHO05D005116 4.2e-58 228.0 134 87.3
BraA04t17767Z Brassica rapa HOM05D004332 ORTHO05D005116 4.2e-58 228.0 134 88.1
BolC4t27343H Brassica oleracea HOM05D004332 ORTHO05D005116 5.5e-58 227.6 134 87.3
THA.LOC104826319 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 1.7e-54 216.1 134 82.1
THA.LOC104800671 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 4.8e-54 214.5 134 80.6
Carub.0008s2008 Capsella rubella HOM05D004332 ORTHO05D005116 2.2e-51 205.7 134 77.6
MD11G1099700 Malus domestica HOM05D004332 ORTHO05D005116 1.9e-50 202.6 134 74.6
CANSAT54G0234 Cannabis sativa HOM05D004332 ORTHO05D005116 2.5e-50 202.2 134 74.6
TWI31G0816 Tripterygium wilfordii HOM05D004332 ORTHO05D005116 2.5e-50 202.2 134 77.6
TWI75G0441 Tripterygium wilfordii HOM05D004332 ORTHO05D005116 2.5e-50 202.2 134 75.4
GSVIVG01024938001 Vitis vinifera HOM05D004332 ORTHO05D005116 2.5e-50 202.2 134 76.1
AL8G35880 Arabidopsis lyrata HOM05D004332 ORTHO05D005116 5.5e-50 201.1 134 76.1
Dinv04179 Davidia involucrata HOM05D004332 ORTHO05D005116 5.5e-50 201.1 134 76.1
THA.LOC104814879 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 5.5e-50 201.1 134 75.4
Aa31sc23G410 Aethionema arabicum HOM05D004332 ORTHO05D005116 9.4e-50 200.3 134 75.4
CSS0035025 Camellia sinensis var. sinensis HOM05D004332 ORTHO05D005116 9.4e-50 200.3 134 75.4
AT5G59410 Arabidopsis thaliana HOM05D004332 ORTHO05D005116 1.2e-49 199.9 134 76.1
Dinv17021 Davidia involucrata HOM05D004332 ORTHO05D005116 1.2e-49 199.9 134 75.4
Dinv42969 Davidia involucrata HOM05D004332 ORTHO05D005116 1.2e-49 199.9 134 75.4
Dinv43130 Davidia involucrata HOM05D004332 ORTHO05D005116 1.2e-49 199.9 134 75.4
Thhalv10015001m.g Eutrema salsugineum HOM05D004332 ORTHO05D005116 1.2e-49 199.9 135 76.3
MD03G1090100 Malus domestica HOM05D004332 ORTHO05D005116 1.6e-49 199.5 134 73.1
Gohir.A05G094800 Gossypium hirsutum HOM05D004332 ORTHO05D005116 2.1e-49 199.1 134 74.6
Gohir.D05G095080 Gossypium hirsutum HOM05D004332 ORTHO05D005116 2.1e-49 199.1 134 74.6
Eucgr.J02045 Eucalyptus grandis HOM05D004332 ORTHO05D005116 2.7e-49 198.7 134 76.1
CiPaw.13G092600 Carya illinoinensis HOM05D004332 ORTHO05D005116 4.7e-49 198.0 134 74.6
Gohir.D05G095200 Gossypium hirsutum HOM05D004332 ORTHO05D005116 4.7e-49 198.0 134 73.9
Prupe.6G074300 Prunus persica HOM05D004332 ORTHO05D005116 4.7e-49 198.0 134 73.1
Thecc.09G319900 Theobroma cacao HOM05D004332 ORTHO05D005116 4.7e-49 198.0 134 74.6
Actinidia34413 Actinidia chinensis HOM05D004332 ORTHO05D005116 8.0e-49 197.2 134 73.9
Sp6g21090 Schrenkiella parvula HOM05D004332 ORTHO05D005116 8.0e-49 197.2 134 73.9
Cc01_g13020 Coffea canephora HOM05D004332 ORTHO05D005116 1.4e-48 196.4 134 73.9
COL.COLO4_18528 Corchorus olitorius HOM05D004332 ORTHO05D005116 1.4e-48 196.4 134 73.9
Manes.01G172400 Manihot esculenta HOM05D004332 ORTHO05D005116 1.4e-48 196.4 134 73.1
MBI05_g28381_MAGBIO Magnolia biondii HOM05D004332 ORTHO05D005116 2.3e-48 195.7 134 73.9
CARHR285780 Cardamine hirsuta HOM05D004332 ORTHO05D005116 3.0e-48 195.3 134 71.6
SalBow2G0012 Salvia bowleyana HOM05D004332 ORTHO05D005116 3.0e-48 195.3 134 70.9
Gorai.009G098500 Gossypium raimondii HOM05D004332 ORTHO05D005116 4.0e-48 194.9 134 73.9
Rhsim01G0229500 Rhododendron simsii HOM05D004332 ORTHO05D005116 4.0e-48 194.9 134 73.9
Manes.02G131400 Manihot esculenta HOM05D004332 ORTHO05D005116 5.2e-48 194.5 134 74.6
Gohir.D03G124100 Gossypium hirsutum HOM05D004332 ORTHO05D005116 6.8e-48 194.1 134 72.4
Duzib150G0187 Durio zibethinus HOM05D004332 ORTHO05D005116 8.8e-48 193.7 134 73.1
TAR633G2148 Trochodendron aralioides HOM05D004332 ORTHO05D005116 8.8e-48 193.7 134 73.1
Potri.009G032100 Populus trichocarpa HOM05D004332 ORTHO05D005116 1.2e-47 193.4 134 70.9
Gohir.A03G043200 Gossypium hirsutum HOM05D004332 ORTHO05D005116 2.0e-47 192.6 134 70.9
arahy.Tifrunner.gnm1.ann1.KAW7XL Arachis hypogaea HOM05D004332 ORTHO05D005116 2.6e-47 192.2 134 70.1
Duzib168G2052 Durio zibethinus HOM05D004332 ORTHO05D005116 2.6e-47 192.2 134 71.6
Glyma.11G138900 Glycine max HOM05D004332 ORTHO05D005116 2.6e-47 192.2 134 71.6
EL10Ac7g16034 Beta vulgaris HOM05D004332 ORTHO05D005116 3.4e-47 191.8 134 73.1
CiPaw.14G067900 Carya illinoinensis HOM05D004332 ORTHO05D005116 3.4e-47 191.8 134 73.1
THA.LOC104810775 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 3.4e-47 191.8 134 73.1
Migut.N00901 Erythranthe guttata HOM05D004332 ORTHO05D005116 4.4e-47 191.4 134 72.4
Oeu017398.1 Olea europaea HOM05D004332 ORTHO05D005116 4.4e-47 191.4 134 72.4
QL01p031517 Quercus lobata HOM05D004332 ORTHO05D005116 4.4e-47 191.4 133 70.7
Gorai.003G130800 Gossypium raimondii HOM05D004332 ORTHO05D005116 5.7e-47 191.0 135 71.9
Ciclev10029562m.g Citrus clementina HOM05D004332 ORTHO05D005116 7.5e-47 190.7 134 70.9
Gohir.D07G103500 Gossypium hirsutum HOM05D004332 ORTHO05D005116 7.5e-47 190.7 133 72.9
CSS0027892 Camellia sinensis var. sinensis HOM05D004332 ORTHO05D005116 1.3e-46 189.9 134 73.1
Glyma.12G062500 Glycine max HOM05D004332 ORTHO05D005116 1.3e-46 189.9 134 70.9
Actinidia37195 Actinidia chinensis HOM05D004332 ORTHO05D005116 1.7e-46 189.5 134 71.6
Lsat_1_v5_gn_9_23661 Lactuca sativa HOM05D004332 ORTHO05D005116 1.7e-46 189.5 134 70.1
Oeu002423.1 Olea europaea HOM05D004332 ORTHO05D005116 1.7e-46 189.5 134 70.9
Lalb_Chr03g0026581 Lupinus albus HOM05D004332 ORTHO05D005116 2.2e-46 189.1 134 69.4
VMungo1127G1024 Vigna mungo HOM05D004332 ORTHO05D005116 2.2e-46 189.1 134 70.1
Hma1.2p1_0615F.1_g189860 Hydrangea macrophylla HOM05D004332 ORTHO05D005116 2.8e-46 188.7 134 72.4
Gohir.A07G099000 Gossypium hirsutum HOM05D004332 ORTHO05D005116 4.9e-46 188.0 134 73.1
AUR62009559 Chenopodium quinoa HOM05D004332 ORTHO05D005116 6.3e-46 187.6 134 68.7
FvH4_3g36490 Fragaria vesca HOM05D004332 ORTHO05D005116 6.3e-46 187.6 134 69.4
FAN11G3576 Fragaria x ananassa HOM05D004332 ORTHO05D005116 6.3e-46 187.6 134 69.4
FAN16G1081 Fragaria x ananassa HOM05D004332 ORTHO05D005116 1.1e-45 186.8 134 69.4
Lalb_Chr19g0137881 Lupinus albus HOM05D004332 ORTHO05D005116 1.1e-45 186.8 134 67.9
FAN25G2250 Fragaria x ananassa HOM05D004332 ORTHO05D005116 1.4e-45 186.4 134 68.7
Nn2g11136 Nelumbo nucifera HOM05D004332 ORTHO05D005116 1.4e-45 186.4 134 69.4
SGA_v2.0_scaffold132G34538 Striga asiatica HOM05D004332 ORTHO05D005116 1.4e-45 186.4 134 70.9
ClCG02G020050 Citrullus lanatus HOM05D004332 ORTHO05D005116 1.8e-45 186.0 119 73.9
Phvul.011G063600 Phaseolus vulgaris HOM05D004332 ORTHO05D005116 2.4e-45 185.7 134 70.1
ECA247G3838 Erigeron canadensis HOM05D004332 ORTHO05D005116 3.1e-45 185.3 129 69.8
HanXRQChr08g0237001 Helianthus annuus HOM05D004332 ORTHO05D005116 3.1e-45 185.3 130 71.5
Rhsim13G0081500 Rhododendron simsii HOM05D004332 ORTHO05D005116 4.1e-45 184.9 134 69.4
RcHm_v2.0_Chr5g0065351 Rosa chinensis HOM05D004332 ORTHO05D005116 4.1e-45 184.9 130 67.7
Potri.001G241500 Populus trichocarpa HOM05D004332 ORTHO05D005116 7.0e-45 184.1 134 70.1
Sc12g0001450 Simmondsia chinensis HOM05D004332 ORTHO05D005116 7.0e-45 184.1 134 70.1
CsaV3_6G016760 Cucumis sativus L. HOM05D004332 ORTHO05D005116 9.1e-45 183.7 134 69.4
TPR.G34281 Trifolium pratense HOM05D004332 ORTHO05D005116 9.1e-45 183.7 134 67.9
unitig_6.g29275 Utricularia gibba HOM05D004332 ORTHO05D005116 9.1e-45 183.7 134 67.9
unitig_747.g21434 Utricularia gibba HOM05D004332 ORTHO05D005116 9.1e-45 183.7 134 67.9
ClCG03G001410 Citrullus lanatus HOM05D004332 ORTHO05D005116 1.2e-44 183.3 134 67.9
MELO3C025906.2 Cucumis melo HOM05D004332 ORTHO05D005116 1.2e-44 183.3 134 69.4
Lj3g0024178 Lotus japonicus HOM05D004332 ORTHO05D005116 1.2e-44 183.3 134 69.4
Sed0019241 Sechium edule HOM05D004332 ORTHO05D005116 1.2e-44 183.3 134 67.2
Gorai.001G111400 Gossypium raimondii HOM05D004332 ORTHO05D005116 1.6e-44 183.0 126 73.0
Psat5g286720 Pisum sativum HOM05D004332 ORTHO05D005116 2.7e-44 182.2 134 66.4
Aqoxy1G00923 Aquilegia oxysepala HOM05D004332 ORTHO05D005116 4.5e-44 181.4 124 72.6
PSO151G0214 Papaver somniferum HOM05D004332 ORTHO05D005116 4.5e-44 181.4 118 72.0
CDE04G0625 Ceratophyllum demersum HOM05D004332 ORTHO05D005116 5.9e-44 181.0 134 67.2
AUR62001771 Chenopodium quinoa HOM05D004332 ORTHO05D005116 5.9e-44 181.0 134 66.4
Oeu064111.2 Olea europaea HOM05D004332 ORTHO05D005116 5.9e-44 181.0 134 68.7
Medtr2g097270 Medicago truncatula HOM05D004332 ORTHO05D005116 7.7e-44 180.6 130 68.5
ATR0559G209 Amborella trichopoda HOM05D004332 ORTHO05D005116 1.0e-43 180.3 134 70.1
PSO339G1935 Papaver somniferum HOM05D004332 ORTHO05D005116 1.0e-43 180.3 130 68.5
Hund04945 Selenicereus undatus HOM05D004332 ORTHO05D005116 1.3e-43 179.9 127 70.1
MELO3C020622.2 Cucumis melo HOM05D004332 ORTHO05D005116 1.7e-43 179.5 134 64.9
Ah.08g219640 Amaranthus hybridus HOM05D004332 ORTHO05D005116 2.9e-43 178.7 134 66.4
Sc21g0005870 Simmondsia chinensis HOM05D004332 ORTHO05D005116 2.9e-43 178.7 134 69.4
Sed0025770 Sechium edule HOM05D004332 ORTHO05D005116 3.8e-43 178.3 134 66.4
CAN.G394.64 Capsicum annuum HOM05D004332 ORTHO05D005116 8.6e-43 177.2 134 66.4
CDE07G0755 Ceratophyllum demersum HOM05D004332 ORTHO05D005116 8.6e-43 177.2 134 64.9
CsaV3_1G034360 Cucumis sativus L. HOM05D004332 ORTHO05D005116 8.6e-43 177.2 134 64.9
Nitab4.5_0000463g0140 Nicotiana tabacum HOM05D004332 ORTHO05D005116 8.6e-43 177.2 134 66.4
Nitab4.5_0001326g0120 Nicotiana tabacum HOM05D004332 ORTHO05D005116 1.1e-42 176.8 134 66.4
Sed0013921 Sechium edule HOM05D004332 ORTHO05D005116 1.1e-42 176.8 134 66.4
Sabra09G0022800 Salix brachista HOM05D004332 ORTHO05D005116 1.5e-42 176.4 125 69.6
PGR102G2585 Punica granatum HOM05D004332 ORTHO05D005116 1.9e-42 176.0 136 69.1
PGSC0003DMG400030417 Solanum tuberosum HOM05D004332 ORTHO05D005116 2.5e-42 175.6 134 65.7
vmacro14542 Vaccinium macrocarpon HOM05D004332 ORTHO05D005116 2.5e-42 175.6 122 71.3
arahy.Tifrunner.gnm1.ann1.WMUR0J Arachis hypogaea HOM05D004332 ORTHO05D005116 4.2e-42 174.9 121 69.4
Solyc06g076260.3 Solanum lycopersicum HOM05D004332 ORTHO05D005116 9.5e-42 173.7 134 65.7
Sabra16G0146000 Salix brachista HOM05D004332 ORTHO05D005116 1.6e-41 172.9 148 62.8
TAR636G3330 Trochodendron aralioides HOM05D004332 ORTHO05D005116 2.8e-41 172.2 123 70.7
arahy.Tifrunner.gnm1.ann1.TT4C38 Arachis hypogaea HOM05D004332 ORTHO05D005116 1.8e-40 169.5 131 66.4
DCAR_018915 Daucus carota HOM05D004332 ORTHO05D005116 1.8e-40 169.5 121 66.9
Lsat_1_v5_gn_8_73521 Lactuca sativa HOM05D004332 ORTHO05D005116 8.9e-40 167.2 126 64.3
arahy.Tifrunner.gnm1.ann1.A22IES Arachis hypogaea HOM05D004332 ORTHO05D005116 1.2e-39 166.8 126 66.7
SEGI_11468 Sequoiadendron giganteum HOM05D004332 ORTHO05D005116 1.5e-39 166.4 134 61.2
Atru.chr3.3947 Acer truncatum HOM05D004332 ORTHO05D005116 7.5e-39 164.1 142 62.7
Os05g0110600 Oryza sativa ssp. japonica HOM05D004332 ORTHO05D005116 3.7e-38 161.8 134 62.7
SMO304G0081 Selaginella moellendorffii HOM05D004332 ORTHO05D005116 3.5e-36 155.2 134 56.0
Mapoly0045s0062 Marchantia polymorpha HOM05D004332 ORTHO05D005116 4.6e-36 154.8 117 59.0
Zm00001eb266910 Zea mays HOM05D004332 ORTHO05D005116 7.8e-36 154.1 128 59.4
HanXRQChr07g0197291 Helianthus annuus HOM05D004332 ORTHO05D005116 3.9e-35 151.8 143 55.9
Nn2g13368 Nelumbo nucifera HOM05D004332 ORTHO05D005116 3.9e-35 151.8 91 76.9
Pp3c16_16760 Physcomitrium patens HOM05D004332 ORTHO05D005116 2.5e-34 149.1 102 66.7
AL4G23580 Arabidopsis lyrata HOM05D004332 ORTHO05D005116 7.3e-34 147.5 78 94.9
AagrBONN_evm.TU.Sc2ySwM_228.3328 Anthoceros agrestis HOM05D004332 ORTHO05D005116 1.2e-31 140.2 134 57.5
Pp3c6_17300 Physcomitrium patens HOM05D004332 ORTHO05D005116 5.4e-29 131.3 110 53.6
Sopen06g032690 Solanum pennellii HOM05D004332 ORTHO05D005116 2.1e-25 119.4 78 70.5
Actinidia07026 Actinidia chinensis HOM05D004332 ORTHO05D005116 1.4e-24 116.7 85 69.4
Haze_24115 Corylus avellana HOM05D004332 ORTHO05D005116 3.4e-23 112.1 81 70.4
TAR369G0503 Trochodendron aralioides HOM05D004332 ORTHO05D005116 3.2e-21 105.5 79 68.4
vmacro03061 Vaccinium macrocarpon HOM05D004332 ORTHO05D005116 3.9e-19 98.6 83 61.4
FAN21G1178 Fragaria x ananassa HOM05D004332 ORTHO05D005116 5.1e-19 98.2 78 64.1
Peaxi162Scf00774g00129 Petunia axillaris HOM05D004332 ORTHO05D005116 2.3e-16 89.4 56 75.0
Actinidia23932 Actinidia chinensis HOM05D004332 ORTHO05D005116 3.1e-16 89.0 60 73.3
SEGI_12680 Sequoiadendron giganteum HOM05D004332 ORTHO05D005116 3.1e-16 89.0 80 53.8
SHI47893 Sapria himalayana HOM05D004332 ORTHO05D005116 4.6e-12 75.1 50 68.0
HPP92_028206 Vanilla planifolia HOM05D004332 ORTHO05D005116 2.1e-09 66.2 50 62.0
Cre08.g376000 Chlamydomonas reinhardtii HOM05D004332 ORTHO05D005116 8.1e-09 64.3 95 37.9
Eucgr.H02119 Eucalyptus grandis HOM05D004332 ORTHO05D005116 4.4e-07 58.5 42 64.3


User provided reference genes

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