Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G28725 Arabidopsis thaliana HOM05D001886 ORTHO05D004007 4.1e-54 214.5 113 100.0
AL4G23260 Arabidopsis lyrata HOM05D001886 ORTHO05D004007 1.3e-44 183.0 107 90.7
Carub.0004s0974 Capsella rubella HOM05D001886 ORTHO05D004007 5.9e-37 157.5 113 77.0
CARHR121860 Cardamine hirsuta HOM05D001886 ORTHO05D004007 1.2e-32 143.3 99 74.7
BcaC02g08141 Brassica carinata HOM05D001886 ORTHO05D004007 9.8e-32 140.2 112 67.0
C04p57930 Brassica napus HOM05D001886 ORTHO05D004007 9.8e-32 140.2 112 67.0
BolC4t27319H Brassica oleracea HOM05D001886 ORTHO05D004007 9.8e-32 140.2 112 67.0
Sp4g11590 Schrenkiella parvula HOM05D001886 ORTHO05D004007 1.3e-31 139.8 115 65.2
BcaB06g28246 Brassica carinata HOM05D001886 ORTHO05D004007 2.8e-31 138.7 107 68.2
BcaC01g04990 Brassica carinata HOM05D001886 ORTHO05D004007 8.3e-31 137.1 109 68.8
A04p21800 Brassica napus HOM05D001886 ORTHO05D004007 8.3e-31 137.1 107 66.4
C03p31370 Brassica napus HOM05D001886 ORTHO05D004007 8.3e-31 137.1 109 68.8
A03p26260 Brassica napus HOM05D001886 ORTHO05D004007 1.4e-30 136.3 110 68.2
BolC3t15485H Brassica oleracea HOM05D001886 ORTHO05D004007 1.4e-30 136.3 109 67.9
BraA03t11840Z Brassica rapa HOM05D001886 ORTHO05D004007 1.4e-30 136.3 110 68.2
BraA04t17747Z Brassica rapa HOM05D001886 ORTHO05D004007 2.4e-30 135.6 107 66.4
C05p05710 Brassica napus HOM05D001886 ORTHO05D004007 5.4e-30 134.4 118 60.2
BraA09t41960Z Brassica rapa HOM05D001886 ORTHO05D004007 9.2e-30 133.7 107 63.6
BolC5t29341H Brassica oleracea HOM05D001886 ORTHO05D015777 1.2e-29 133.3 118 60.2
BcaB01g03123 Brassica carinata HOM05D001886 ORTHO05D004007 2.0e-29 132.5 108 66.7
BcaC07g42494 Brassica carinata HOM05D001886 ORTHO05D004007 2.7e-29 132.1 107 62.6
Thhalv10017464m.g Eutrema salsugineum HOM05D001886 ORTHO05D004007 1.7e-28 129.4 105 66.7
Thhalv10009977m.g Eutrema salsugineum HOM05D001886 ORTHO05D004007 5.0e-28 127.9 107 60.7
A09p66220 Brassica napus HOM05D001886 ORTHO05D004007 6.6e-28 127.5 107 62.6
BcaB02g06704 Brassica carinata HOM05D001886 ORTHO05D004007 1.1e-27 126.7 105 60.0
AT1G07795 Arabidopsis thaliana HOM05D001886 ORTHO05D004007 1.5e-27 126.3 107 61.7
AL1G18080 Arabidopsis lyrata HOM05D001886 ORTHO05D004007 1.9e-27 125.9 107 60.7
THA.LOC104800648 Tarenaya hassleriana HOM05D001886 ORTHO05D004007 2.8e-26 122.1 112 58.9
CARHR007610 Cardamine hirsuta HOM05D001886 ORTHO05D004007 4.7e-26 121.3 107 56.1
Carub.0001s0716 Capsella rubella HOM05D001886 ORTHO05D004007 1.0e-25 120.2 111 56.8
Aa31LG5G7470 Aethionema arabicum HOM05D001886 ORTHO05D004007 3.4e-24 115.2 106 54.7
C08p50390 Brassica napus HOM05D001886 ORTHO05D004007 1.8e-22 109.4 89 61.8
BolC8t52567H Brassica oleracea HOM05D001886 ORTHO05D004007 1.8e-22 109.4 89 61.8
BcaC07g41980 Brassica carinata HOM05D001886 ORTHO05D004007 3.9e-20 101.7 105 53.3
CiPaw.13G097900 Carya illinoinensis HOM05D001886 ORTHO05D004007 1.1e-17 93.6 102 47.1
CiPaw.09G189700 Carya illinoinensis HOM05D001886 ORTHO05D004007 3.1e-17 92.0 100 49.0
COL.COLO4_18467 Corchorus olitorius HOM05D001886 ORTHO05D004007 3.1e-17 92.0 96 51.0
MD03G1097600 Malus domestica HOM05D001886 ORTHO05D004007 3.1e-17 92.0 103 44.7
HanXRQChr13g0398891 Helianthus annuus HOM05D001886 ORTHO05D004007 5.2e-17 91.3 118 44.1
Lsat_1_v5_gn_6_31360 Lactuca sativa HOM05D001886 ORTHO05D004007 8.9e-17 90.5 107 45.8
Prupe.6G081800 Prunus persica HOM05D001886 ORTHO05D004007 8.9e-17 90.5 108 44.4
Ciclev10030058m.g Citrus clementina HOM05D001886 ORTHO05D004007 1.2e-16 90.1 97 51.5
RcHm_v2.0_Chr5g0063581 Rosa chinensis HOM05D001886 ORTHO05D004007 1.2e-16 90.1 109 44.0
Gohir.A07G096100 Gossypium hirsutum HOM05D001886 ORTHO05D004007 3.4e-16 88.6 96 49.0
Gohir.D07G100500 Gossypium hirsutum HOM05D001886 ORTHO05D004007 3.4e-16 88.6 96 49.0
Gorai.001G108400 Gossypium raimondii HOM05D001886 ORTHO05D004007 3.4e-16 88.6 96 49.0
Atru.chr3.3836 Acer truncatum HOM05D001886 ORTHO05D004007 4.4e-16 88.2 104 48.1
CiPaw.10G143600 Carya illinoinensis HOM05D001886 ORTHO05D004007 5.8e-16 87.8 100 46.0
Prupe.6G251200 Prunus persica HOM05D001886 ORTHO05D004007 7.5e-16 87.4 101 46.5
PGR142G2414 Punica granatum HOM05D001886 ORTHO05D004007 7.5e-16 87.4 110 43.6
Cfa017419 Carpinus fangiana HOM05D001886 ORTHO05D004007 9.8e-16 87.0 102 46.1
MD12G1139400 Malus domestica HOM05D001886 ORTHO05D004007 9.8e-16 87.0 99 45.5
Nn2g12929 Nelumbo nucifera HOM05D001886 ORTHO05D004007 9.8e-16 87.0 106 44.3
MELO3C003112.2 Cucumis melo HOM05D001886 ORTHO05D004007 1.3e-15 86.7 102 43.1
CsaV3_4G024780 Cucumis sativus L. HOM05D001886 ORTHO05D004007 1.3e-15 86.7 102 43.1
MD04G1123500 Malus domestica HOM05D001886 ORTHO05D004007 1.3e-15 86.7 101 43.6
TAR636G3006 Trochodendron aralioides HOM05D001886 ORTHO05D004007 1.3e-15 86.7 94 47.9
Cpa.g.sc190.15 Carica papaya HOM05D001886 ORTHO05D004007 2.2e-15 85.9 91 48.4
Duzib150G0204 Durio zibethinus HOM05D001886 ORTHO05D004007 2.2e-15 85.9 105 43.8
ECA233G1369 Erigeron canadensis HOM05D001886 ORTHO05D004007 2.2e-15 85.9 121 42.1
Nn2g10427 Nelumbo nucifera HOM05D001886 ORTHO05D004007 2.2e-15 85.9 106 43.4
TWI74G0754 Tripterygium wilfordii HOM05D001886 ORTHO05D004007 2.2e-15 85.9 103 41.7
CSS0007004 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D004007 2.9e-15 85.5 104 42.3
CSS0016629 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D004007 2.9e-15 85.5 104 42.3
Thecc.09G325900 Theobroma cacao HOM05D001886 ORTHO05D004007 2.9e-15 85.5 105 43.8
ClCG04G008370 Citrullus lanatus HOM05D001886 ORTHO05D004007 3.7e-15 85.1 102 43.1
FvH4_3g35450 Fragaria vesca HOM05D001886 ORTHO05D004007 3.7e-15 85.1 102 44.1
Hma1.2p1_1481F.1_g286140 Hydrangea macrophylla HOM05D001886 ORTHO05D004007 4.9e-15 84.7 114 40.4
TAR623G0309 Trochodendron aralioides HOM05D001886 ORTHO05D004007 4.9e-15 84.7 101 41.6
Hma1.2p1_1707F.1_g298490 Hydrangea macrophylla HOM05D001886 ORTHO05D004007 6.4e-15 84.3 114 40.4
COL.COLO4_14848 Corchorus olitorius HOM05D001886 ORTHO05D004007 8.3e-15 84.0 101 45.5
Cfa011462 Carpinus fangiana HOM05D001886 ORTHO05D004007 1.1e-14 83.6 102 42.2
Duzib093G1578 Durio zibethinus HOM05D001886 ORTHO05D004007 1.1e-14 83.6 101 44.6
Haze_24047 Corylus avellana HOM05D001886 ORTHO05D004007 1.4e-14 83.2 96 44.8
Manes.09G087200 Manihot esculenta HOM05D001886 ORTHO05D004007 1.4e-14 83.2 100 43.0
AUR62036093 Chenopodium quinoa HOM05D001886 ORTHO05D004007 1.9e-14 82.8 88 47.7
FAN11G3942 Fragaria x ananassa HOM05D001886 ORTHO05D004007 2.4e-14 82.4 97 44.3
Lj1g0006648 Lotus japonicus HOM05D001886 ORTHO05D004007 2.4e-14 82.4 99 43.4
Dinv35628 Davidia involucrata HOM05D001886 ORTHO05D005666 3.2e-14 82.0 112 39.3
QL05p010714 Quercus lobata HOM05D001886 ORTHO05D004007 3.2e-14 82.0 102 44.1
QL07p047484 Quercus lobata HOM05D001886 ORTHO05D004007 3.2e-14 82.0 102 44.1
Thecc.05G043600 Theobroma cacao HOM05D001886 ORTHO05D004007 4.1e-14 81.6 101 43.6
Cpa.g.sc188.23 Carica papaya HOM05D001886 ORTHO05D004007 5.4e-14 81.3 102 44.1
FAN16G1011 Fragaria x ananassa HOM05D001886 ORTHO05D004007 5.4e-14 81.3 102 42.2
Rhsim05G0188300 Rhododendron simsii HOM05D001886 ORTHO05D004007 7.0e-14 80.9 102 39.2
Aqoxy2G02038 Aquilegia oxysepala HOM05D001886 ORTHO05D004007 9.2e-14 80.5 102 40.2
CANSAT01G0239 Cannabis sativa HOM05D001886 ORTHO05D004007 9.2e-14 80.5 105 46.7
FAN25G1849 Fragaria x ananassa HOM05D001886 ORTHO05D004007 9.2e-14 80.5 95 44.2
MBI14_g24316_MAGBIO Magnolia biondii HOM05D001886 ORTHO05D004007 9.2e-14 80.5 101 45.5
CiPaw.09G189600 Carya illinoinensis HOM05D001886 ORTHO05D004007 1.2e-13 80.1 98 40.8
FAN21G2352 Fragaria x ananassa HOM05D001886 ORTHO05D004007 1.2e-13 80.1 102 41.2
Gohir.A09G157900 Gossypium hirsutum HOM05D001886 ORTHO05D004007 2.0e-13 79.3 101 43.6
Medtr7g099860 Medicago truncatula HOM05D001886 ORTHO05D004007 2.7e-13 79.0 97 42.3
TPR.G21449 Trifolium pratense HOM05D001886 ORTHO05D004007 2.7e-13 79.0 96 41.7
Gohir.D03G128600 Gossypium hirsutum HOM05D001886 ORTHO05D004007 3.5e-13 78.6 105 40.0
Gorai.003G135300 Gossypium raimondii HOM05D001886 ORTHO05D004007 3.5e-13 78.6 105 40.0
Gohir.D09G153200 Gossypium hirsutum HOM05D001886 ORTHO05D004007 4.6e-13 78.2 101 42.6
Gorai.006G174700 Gossypium raimondii HOM05D001886 ORTHO05D004007 4.6e-13 78.2 101 42.6
PGSC0003DMG400008923 Solanum tuberosum HOM05D001886 ORTHO05D004007 4.6e-13 78.2 111 40.5
DCAR_009245 Daucus carota HOM05D001886 ORTHO05D004007 6.0e-13 77.8 104 39.4
Lj5g0001892 Lotus japonicus HOM05D001886 ORTHO05D004007 6.0e-13 77.8 98 41.8
Psat3g049080 Pisum sativum HOM05D001886 ORTHO05D004007 6.0e-13 77.8 93 41.9
FvH4_6g14180 Fragaria vesca HOM05D001886 ORTHO05D004007 7.8e-13 77.4 97 44.3
FAN05G2305 Fragaria x ananassa HOM05D001886 ORTHO05D004007 7.8e-13 77.4 97 44.3
FAN09G0249 Fragaria x ananassa HOM05D001886 ORTHO05D004007 1.0e-12 77.0 97 44.3
FAN14G5259 Fragaria x ananassa HOM05D001886 ORTHO05D004007 1.0e-12 77.0 97 43.3
Sopen09g005220 Solanum pennellii HOM05D001886 ORTHO05D004007 1.0e-12 77.0 111 39.6
SGA_v2.0_scaffold126G33809 Striga asiatica HOM05D001886 ORTHO05D004007 1.0e-12 77.0 96 41.7
Glyma.19G172900 Glycine max HOM05D001886 ORTHO05D004007 1.3e-12 76.6 94 42.6
Lj1g0019269 Lotus japonicus HOM05D001886 ORTHO05D004007 1.3e-12 76.6 97 41.2
Solyc09g010480.1 Solanum lycopersicum HOM05D001886 ORTHO05D004007 1.3e-12 76.6 111 40.5
Eucgr.A01246 Eucalyptus grandis HOM05D001886 ORTHO05D004007 1.7e-12 76.3 105 40.0
RcHm_v2.0_Chr3g0467161 Rosa chinensis HOM05D001886 ORTHO05D004007 1.7e-12 76.3 97 42.3
Sc12g0001630 Simmondsia chinensis HOM05D001886 ORTHO05D004007 2.3e-12 75.9 98 43.9
Glyma.03G172000 Glycine max HOM05D001886 ORTHO05D004007 3.0e-12 75.5 94 42.6
CANSAT35G1619 Cannabis sativa HOM05D001886 ORTHO05D004007 3.9e-12 75.1 94 39.4
MELO3C013683.2 Cucumis melo HOM05D001886 ORTHO05D004007 3.9e-12 75.1 87 49.4
Sed0021579 Sechium edule HOM05D001886 ORTHO05D004007 5.0e-12 74.7 106 38.7
ClCG02G020370 Citrullus lanatus HOM05D001886 ORTHO05D004007 6.6e-12 74.3 87 49.4
Psat3g049240 Pisum sativum HOM05D001886 ORTHO05D004007 6.6e-12 74.3 94 39.4
Ca_08781_v3 Cicer arietinum L. HOM05D001886 ORTHO05D004007 8.6e-12 73.9 97 39.2
Lalb_Chr01g0019251 Lupinus albus HOM05D001886 ORTHO05D004007 8.6e-12 73.9 99 40.4
PGR004G0749 Punica granatum HOM05D001886 ORTHO05D004007 8.6e-12 73.9 104 39.4
Hund04991 Selenicereus undatus HOM05D000437 ORTHO05D000324 1.1e-11 73.6 85 45.9
Haze_20751 Corylus avellana HOM05D001886 ORTHO05D004007 1.5e-11 73.2 103 41.7
Phvul.001G169700 Phaseolus vulgaris HOM05D001886 ORTHO05D004007 1.9e-11 72.8 94 39.4
Atru.chr8.1947 Acer truncatum HOM05D001886 ORTHO05D005666 3.3e-11 72.0 93 40.9
Migut.J00350 Erythranthe guttata HOM05D001886 ORTHO05D004007 3.3e-11 72.0 92 43.5
Nitab4.5_0003267g0060 Nicotiana tabacum HOM05D001886 ORTHO05D004007 3.3e-11 72.0 99 42.4
Sabra06G0063400 Salix brachista HOM05D001886 ORTHO05D004007 4.3e-11 71.6 92 42.4
Ciclev10013572m.g Citrus clementina HOM05D001886 ORTHO05D004007 5.6e-11 71.2 107 37.4
CsaV3_6G022260 Cucumis sativus L. HOM05D001886 ORTHO05D004007 7.3e-11 70.9 96 45.8
Aa31LG5G22950 Aethionema arabicum HOM05D001886 ORTHO05D004007 1.2e-10 70.1 95 40.0
arahy.Tifrunner.gnm1.ann1.QN2KEZ Arachis hypogaea HOM05D001886 ORTHO05D005666 1.2e-10 70.1 97 36.1
Medtr2g096630 Medicago truncatula HOM05D001886 ORTHO05D004007 1.2e-10 70.1 89 47.2
arahy.Tifrunner.gnm1.ann1.LM62V2 Arachis hypogaea HOM05D001886 ORTHO05D005666 1.6e-10 69.7 97 36.1
Oeu060049.1 Olea europaea HOM05D001886 ORTHO05D005666 1.6e-10 69.7 102 35.3
Sed0011835 Sechium edule HOM05D001886 ORTHO05D004007 1.6e-10 69.7 87 43.7
Glyma.13G334000 Glycine max HOM05D001886 ORTHO05D004007 2.1e-10 69.3 89 48.3
Potri.006G083800 Populus trichocarpa HOM05D001886 ORTHO05D004007 2.1e-10 69.3 92 41.3
Lalb_Chr06g0171021 Lupinus albus HOM05D001886 ORTHO05D004007 2.8e-10 68.9 97 36.1
Hma1.2p1_0624F.1_g191360 Hydrangea macrophylla HOM05D001886 ORTHO05D004007 3.6e-10 68.6 109 33.9
Lj3g0013632 Lotus japonicus HOM05D001886 ORTHO05D004007 6.2e-10 67.8 95 45.3
PSO339G5886 Papaver somniferum HOM05D001886 ORTHO05D004007 6.2e-10 67.8 109 32.1
arahy.Tifrunner.gnm1.ann1.F78JUJ Arachis hypogaea HOM05D001886 ORTHO05D004007 8.1e-10 67.4 84 46.4
A03p20700 Brassica napus HOM05D001886 ORTHO05D004007 8.1e-10 67.4 90 38.9
CARHR132080 Cardamine hirsuta HOM05D001886 ORTHO05D004007 8.1e-10 67.4 98 37.8
AUR62009610 Chenopodium quinoa HOM05D001365 ORTHO05D001291 8.1e-10 67.4 83 42.2
AUR62041758 Chenopodium quinoa HOM05D001886 ORTHO05D004007 8.1e-10 67.4 102 34.3
THA.LOC104823422 Tarenaya hassleriana HOM05D001886 ORTHO05D004007 1.1e-09 67.0 108 34.3
BraA03t11311Z Brassica rapa HOM05D001886 ORTHO05D004007 1.4e-09 66.6 90 38.9
Lalb_Chr03g0026781 Lupinus albus HOM05D001886 ORTHO05D004007 1.4e-09 66.6 100 41.0
VMungo1383G2619 Vigna mungo HOM05D001886 ORTHO05D004007 1.4e-09 66.6 101 35.6
Actinidia05303 Actinidia chinensis HOM05D001886 ORTHO05D004007 1.8e-09 66.2 99 39.4
AT2G37530 Arabidopsis thaliana HOM05D001886 ORTHO05D004007 1.8e-09 66.2 98 39.8
BolC3t14831H Brassica oleracea HOM05D001886 ORTHO05D004007 1.8e-09 66.2 90 37.8
Sp4g19850 Schrenkiella parvula HOM05D001886 ORTHO05D004007 1.8e-09 66.2 98 37.8
AL4G34020 Arabidopsis lyrata HOM05D001886 ORTHO05D004007 2.3e-09 65.9 99 37.4
BcaC01g05612 Brassica carinata HOM05D001886 ORTHO05D004007 3.1e-09 65.5 90 37.8
C03p24330 Brassica napus HOM05D001886 ORTHO05D004007 3.1e-09 65.5 90 37.8
Lj3P970T51 Lonicera japonica HOM05D001886 ORTHO05D004007 3.1e-09 65.5 103 39.8
SalBow4G1303 Salvia bowleyana HOM05D001886 ORTHO05D004007 3.1e-09 65.5 112 36.6
BcaB01g03772 Brassica carinata HOM05D001886 ORTHO05D004007 4.0e-09 65.1 100 36.0
Carub.0004s1945 Capsella rubella HOM05D001886 ORTHO05D004007 4.0e-09 65.1 100 39.0
VMungo1080G1431 Vigna mungo HOM05D001886 ORTHO05D004007 8.9e-09 63.9 96 41.7
SalBow4G2596 Salvia bowleyana HOM05D001886 ORTHO05D004007 1.2e-08 63.5 105 38.1
Ah.01g020040 Amaranthus hybridus HOM05D001886 ORTHO05D004007 1.5e-08 63.2 102 36.3
ATR0723G053 Amborella trichopoda HOM05D001886 ORTHO05D004007 1.5e-08 63.2 98 34.7
TPR.G34284 Trifolium pratense HOM05D001886 ORTHO05D004007 1.5e-08 63.2 83 47.0
AUR62041036 Chenopodium quinoa HOM05D001886 ORTHO05D004007 2.0e-08 62.8 102 33.3
Thhalv10017427m.g Eutrema salsugineum HOM05D001886 ORTHO05D004007 2.0e-08 62.8 98 35.7
arahy.Tifrunner.gnm1.ann1.5KK3LT Arachis hypogaea HOM05D001886 ORTHO05D004007 5.8e-08 61.2 76 47.4
Nitab4.5_0002077g0050 Nicotiana tabacum HOM05D001886 ORTHO05D004007 5.8e-08 61.2 105 38.1
CSS0013260 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D004007 7.5e-08 60.8 107 36.4
CSS0032829 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D004007 7.5e-08 60.8 107 36.4
Phvul.L003643 Phaseolus vulgaris HOM05D001886 ORTHO05D004007 1.7e-07 59.7 103 40.8
HPP92_018051 Vanilla planifolia HOM05D001886 ORTHO05D004007 1.7e-07 59.7 95 38.9
HPP92_018060 Vanilla planifolia HOM05D001886 ORTHO05D004007 1.7e-07 59.7 95 38.9
Glyma.13G131500 Glycine max HOM05D001886 ORTHO05D004007 6.4e-07 57.8 91 38.5
Actinidia26440 Actinidia chinensis HOM05D001886 ORTHO05D004007 1.1e-06 57.0 79 39.2
AUR62009611 Chenopodium quinoa HOM05D003297 ORTHO05D004027 1.1e-06 57.0 85 36.5
CSS0006045 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D004007 1.4e-06 56.6 89 40.4
Glyma.10G043800 Glycine max HOM05D001886 ORTHO05D004007 1.4e-06 56.6 92 38.0
Sc20g0004970 Simmondsia chinensis HOM05D001886 ORTHO05D004007 1.4e-06 56.6 88 35.2
Phvul.007G157600 Phaseolus vulgaris HOM05D001886 ORTHO05D004007 9.2e-06 53.9 92 35.9


User provided reference genes

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