Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G28605 Arabidopsis thaliana HOM05D006319 ORTHO05D007963 4.4e-127 458.0 233 100.0
AL4G23100 Arabidopsis lyrata HOM05D006319 ORTHO05D007963 1.6e-105 386.3 241 85.9
CARHR121630 Cardamine hirsuta HOM05D006319 ORTHO05D007963 1.4e-101 373.2 239 83.7
Carub.0004s0957 Capsella rubella HOM05D006319 ORTHO05D007963 1.7e-99 366.3 239 83.3
Thhalv10017176m.g Eutrema salsugineum HOM05D006319 ORTHO05D007963 7.0e-93 344.4 241 78.4
BcaB01g03112 Brassica carinata HOM05D006319 ORTHO05D007963 1.7e-91 339.7 243 78.2
BcaB06g28232 Brassica carinata HOM05D006319 ORTHO05D007963 9.5e-90 334.0 237 76.8
BcaC02g08157 Brassica carinata HOM05D006319 ORTHO05D007963 1.1e-88 330.5 240 77.1
C04p57790 Brassica napus HOM05D006319 ORTHO05D007963 1.1e-88 330.5 240 77.1
BolC4t27297H Brassica oleracea HOM05D006319 ORTHO05D007963 1.1e-88 330.5 239 77.0
A04p21670 Brassica napus HOM05D006319 ORTHO05D007963 1.4e-88 330.1 240 76.7
BraA04t17731Z Brassica rapa HOM05D006319 ORTHO05D007963 1.4e-88 330.1 240 77.1
Sp4g11430 Schrenkiella parvula HOM05D006319 ORTHO05D007963 2.3e-88 329.3 242 76.0
A03p26290 Brassica napus HOM05D006319 ORTHO05D007963 2.6e-87 325.9 239 76.6
BraA03t11843Z Brassica rapa HOM05D006319 ORTHO05D007963 1.7e-86 323.2 239 76.2
Aa31LG5G7620 Aethionema arabicum HOM05D005759 ORTHO05D007172 4.9e-86 321.6 241 71.4
BcaC01g04984 Brassica carinata HOM05D006319 ORTHO05D007963 2.4e-85 319.3 244 73.0
C03p31420 Brassica napus HOM05D006319 ORTHO05D007963 1.4e-77 293.5 189 83.6
THA.LOC104826346 Tarenaya hassleriana HOM05D006319 ORTHO05D007963 2.4e-69 266.2 244 61.1
Thecc.01G138200 Theobroma cacao HOM05D006319 ORTHO05D007963 1.0e-67 260.8 247 59.1
BolC3t15489H Brassica oleracea HOM05D006319 ORTHO05D007963 1.7e-67 260.0 161 84.5
Prupe.4G276300 Prunus persica HOM05D006319 ORTHO05D007963 6.6e-67 258.1 224 64.7
Potri.007G100800 Populus trichocarpa HOM05D006319 ORTHO05D007963 8.7e-67 257.7 226 63.7
Gorai.011G118400 Gossypium raimondii HOM05D006319 ORTHO05D007963 6.2e-65 251.5 233 60.9
Glyma.06G156100 Glycine max HOM05D006319 ORTHO05D007963 1.1e-64 250.8 204 63.7
TWI31G0926 Tripterygium wilfordii HOM05D006319 ORTHO05D007963 1.1e-64 250.8 226 60.6
Eucgr.H05122 Eucalyptus grandis HOM05D006319 ORTHO05D007963 1.4e-64 250.4 195 67.2
Dinv05221 Davidia involucrata HOM05D006319 ORTHO05D007963 1.8e-64 250.0 227 61.7
Manes.12G159300 Manihot esculenta HOM05D006319 ORTHO05D007963 1.8e-64 250.0 186 68.8
GSVIVG01022331001 Vitis vinifera HOM05D006319 ORTHO05D007963 5.3e-64 248.4 193 68.4
ClCG02G000280 Citrullus lanatus HOM05D005757 ORTHO05D007090 9.0e-64 247.7 189 68.8
RcHm_v2.0_Chr2g0122611 Rosa chinensis HOM05D006319 ORTHO05D007963 1.2e-63 247.3 206 64.6
Ciclev10002322m.g Citrus clementina HOM05D006319 ORTHO05D007963 1.5e-63 246.9 195 67.2
QL10p041175 Quercus lobata HOM05D006319 ORTHO05D007963 1.5e-63 246.9 190 66.8
Duzib187G0662 Durio zibethinus HOM05D006319 ORTHO05D007963 2.0e-63 246.5 192 68.2
Hma1.2p1_0236F.1_g099250 Hydrangea macrophylla HOM05D006319 ORTHO05D007963 2.0e-63 246.5 232 60.3
MD01G1000300 Malus domestica HOM05D006319 ORTHO05D007963 2.0e-63 246.5 192 66.7
CsaV3_2G019570 Cucumis sativus L. HOM05D006319 ORTHO05D007963 2.6e-63 246.1 188 69.1
Lj1g0009956 Lotus japonicus HOM05D006319 ORTHO05D007963 3.4e-63 245.7 229 61.1
Atru.chr4.1000 Acer truncatum HOM05D006319 ORTHO05D007963 4.5e-63 245.4 197 66.5
MELO3C023216.2 Cucumis melo HOM05D006319 ORTHO05D007963 7.6e-63 244.6 223 61.9
PGR102G0633 Punica granatum HOM05D006319 ORTHO05D007963 9.9e-63 244.2 192 66.7
Sc02g0003550 Simmondsia chinensis HOM05D006319 ORTHO05D007963 1.7e-62 243.4 228 58.3
Aqoxy6G00315 Aquilegia oxysepala HOM05D006319 ORTHO05D007963 2.9e-62 242.7 196 65.3
CiPaw.04G079200 Carya illinoinensis HOM05D006319 ORTHO05D007963 2.9e-62 242.7 232 60.3
Hund07232 Selenicereus undatus HOM05D006319 ORTHO05D007963 2.9e-62 242.7 244 56.1
COL.COLO4_35821 Corchorus olitorius HOM05D006319 ORTHO05D007963 3.8e-62 242.3 182 69.8
CSS0021790 Camellia sinensis var. sinensis HOM05D006319 ORTHO05D007963 6.4e-62 241.5 228 58.3
DCAR_009594 Daucus carota HOM05D006319 ORTHO05D007963 1.1e-61 240.7 162 74.1
Phvul.009G154200 Phaseolus vulgaris HOM05D006319 ORTHO05D007963 1.9e-61 240.0 189 67.2
Psat5g060360 Pisum sativum HOM05D006319 ORTHO05D007963 2.4e-61 239.6 189 67.2
Cpa.g.sc37.12 Carica papaya HOM05D006319 ORTHO05D007963 4.2e-61 238.8 238 57.6
AUR62000524 Chenopodium quinoa HOM05D006319 ORTHO05D007963 4.2e-61 238.8 201 64.2
Medtr3g096750 Medicago truncatula HOM05D006319 ORTHO05D007963 4.2e-61 238.8 220 60.5
EL10Ac4g09632 Beta vulgaris HOM05D006319 ORTHO05D007963 5.4e-61 238.4 242 58.3
AUR62006869 Chenopodium quinoa HOM05D006319 ORTHO05D007963 1.2e-60 237.3 201 64.2
CANSAT01G1475 Cannabis sativa HOM05D006319 ORTHO05D007963 1.6e-60 236.9 194 66.0
Nn1g08971 Nelumbo nucifera HOM05D006319 ORTHO05D007963 1.6e-60 236.9 189 64.6
Glyma.04G209900 Glycine max HOM05D006319 ORTHO05D007963 2.1e-60 236.5 220 59.5
Lalb_Chr08g0238171 Lupinus albus HOM05D006319 ORTHO05D007963 2.7e-60 236.1 208 59.6
VMungo0464G0362 Vigna mungo HOM05D006319 ORTHO05D007963 3.5e-60 235.7 193 65.3
Ah.06g191080 Amaranthus hybridus HOM05D006319 ORTHO05D007963 6.0e-60 235.0 210 61.0
Lj7A582T32 Lonicera japonica HOM05D006319 ORTHO05D007963 1.3e-59 233.8 163 71.2
QL10p041464 Quercus lobata HOM05D006319 ORTHO05D007963 1.8e-59 233.4 160 71.9
MSTRG.23490 Avicennia marina HOM05D006319 ORTHO05D007963 3.0e-59 232.6 201 62.2
Migut.H00824 Erythranthe guttata HOM05D006319 ORTHO05D007963 3.0e-59 232.6 211 61.6
arahy.Tifrunner.gnm1.ann1.7TU5G5 Arachis hypogaea HOM05D006319 ORTHO05D007963 3.9e-59 232.3 190 64.2
Actinidia16521 Actinidia chinensis HOM05D006319 ORTHO05D007963 5.1e-59 231.9 234 56.0
arahy.Tifrunner.gnm1.ann1.4SM61H Arachis hypogaea HOM05D006319 ORTHO05D007963 5.1e-59 231.9 225 57.3
Sopen04g004550 Solanum pennellii HOM05D006319 ORTHO05D007963 5.1e-59 231.9 202 62.4
Oeu011026.1 Olea europaea HOM05D006319 ORTHO05D007963 6.7e-59 231.5 198 62.6
Solyc04g009420.3 Solanum lycopersicum HOM05D006319 ORTHO05D007963 8.7e-59 231.1 191 64.9
FAN23G2801 Fragaria x ananassa HOM05D006319 ORTHO05D007963 1.5e-58 230.3 207 60.9
Nitab4.5_0013462g0010 Nicotiana tabacum HOM05D006319 ORTHO05D007963 1.5e-58 230.3 197 64.5
PGSC0003DMG400032538 Solanum tuberosum HOM05D006319 ORTHO05D007963 1.5e-58 230.3 234 56.0
arahy.Tifrunner.gnm1.ann1.B4AV5R Arachis hypogaea HOM05D006319 ORTHO05D007963 1.9e-58 229.9 225 56.9
Nitab4.5_0004105g0090 Nicotiana tabacum HOM05D006319 ORTHO05D007963 1.9e-58 229.9 196 65.3
FvH4_1g24980 Fragaria vesca HOM05D006319 ORTHO05D007963 2.5e-58 229.6 209 60.8
arahy.Tifrunner.gnm1.ann1.P5PFFU Arachis hypogaea HOM05D006319 ORTHO05D007963 4.3e-58 228.8 225 58.2
vmacro18688 Vaccinium macrocarpon HOM05D006319 ORTHO05D007963 9.6e-58 227.6 188 62.8
CAN.G186.2 Capsicum annuum HOM05D006319 ORTHO05D007963 1.6e-57 226.9 218 58.3
TAR628G0979 Trochodendron aralioides HOM05D006319 ORTHO05D007963 2.4e-56 223.0 224 54.9
Cc02_g33910 Coffea canephora HOM05D006319 ORTHO05D007963 5.3e-56 221.9 233 57.1
SalBow1G4836 Salvia bowleyana HOM05D006319 ORTHO05D007963 5.3e-56 221.9 169 67.5
FAN19G2853 Fragaria x ananassa HOM05D006319 ORTHO05D007963 6.9e-56 221.5 224 57.1
FAN28G2219 Fragaria x ananassa HOM05D006319 ORTHO05D007963 1.5e-55 220.3 224 56.7
MBI06_g35206_MAGBIO Magnolia biondii HOM05D006319 ORTHO05D007963 2.6e-55 219.5 192 62.5
SGA_v2.0_scaffold273G46467 Striga asiatica HOM05D006319 ORTHO05D007963 4.5e-55 218.8 195 60.5
unitig_899.g15151 Utricularia gibba HOM05D006319 ORTHO05D007963 4.5e-55 218.8 202 57.9
ECA246G1987 Erigeron canadensis HOM05D000001 ORTHO05D000003 2.2e-54 216.5 166 64.5
PSO782G1065 Papaver somniferum HOM05D006319 ORTHO05D007963 3.8e-54 215.7 163 66.3
Eucgr.H02106 Eucalyptus grandis HOM05D006319 ORTHO05D007963 1.2e-52 210.7 192 62.0
CDE08G0565 Ceratophyllum demersum HOM05D006319 ORTHO05D007963 4.6e-52 208.8 197 56.9
Zm00001eb422700 Zea mays HOM05D006319 ORTHO05D007963 4.6e-52 208.8 156 66.7
HanXRQChr12g0378071 Helianthus annuus HOM05D006319 ORTHO05D007963 6.7e-51 204.9 195 56.4
Peaxi162Scf00842g00214 Petunia axillaris HOM05D006319 ORTHO05D007963 9.6e-50 201.1 141 72.3
HPP92_009279 Vanilla planifolia HOM05D006319 ORTHO05D007963 1.3e-49 200.7 156 64.7
ATR0584G200 Amborella trichopoda HOM05D006319 ORTHO05D007963 3.7e-49 199.1 228 52.6
arahy.Tifrunner.gnm1.ann1.GQG991 Arachis hypogaea HOM05D006319 ORTHO05D007963 6.0e-44 181.8 156 61.5
arahy.Tifrunner.gnm1.ann1.E0QW5U Arachis hypogaea HOM05D006319 ORTHO05D007963 1.0e-43 181.0 190 54.7
SEGI_06099 Sequoiadendron giganteum HOM05D006319 ORTHO05D007963 2.4e-40 169.9 157 56.7
Potri.005G068500 Populus trichocarpa HOM05D006319 ORTHO05D007963 3.1e-40 169.5 191 52.4
SEGI_37383 Sequoiadendron giganteum HOM05D006319 ORTHO05D007963 6.9e-40 168.3 155 56.8
Rhsim01G0141500 Rhododendron simsii HOM05D006319 ORTHO05D007963 4.5e-39 165.6 184 48.9
Lsat_1_v5_gn_5_34560 Lactuca sativa HOM05D006319 ORTHO05D007963 1.0e-38 164.5 156 57.7
AagrBONN_evm.TU.Sc2ySwM_228.2950 Anthoceros agrestis HOM05D006319 ORTHO05D007963 2.5e-37 159.8 155 52.3
Gohir.D10G108000 Gossypium hirsutum HOM05D006319 ORTHO05D007963 1.3e-33 147.5 233 43.3
Pp3c8_18060 Physcomitrium patens HOM05D006319 ORTHO05D007963 4.8e-33 145.6 165 49.1
Gohir.A10G068160 Gossypium hirsutum HOM05D006319 ORTHO05D007963 2.0e-31 140.2 244 41.0
SMO117G0258 Selaginella moellendorffii HOM05D006319 ORTHO05D007963 3.8e-30 136.0 165 44.8
Ca_16986_v3 Cicer arietinum L. HOM05D001650 ORTHO05D001592 1.9e-29 133.7 95 69.5
TPR.G10777 Trifolium pratense HOM05D006319 ORTHO05D007963 3.9e-27 125.9 82 73.2
CBR_g49982 Chara braunii HOM05D006319 ORTHO05D007963 2.6e-26 123.2 169 41.4
FAN23G0464 Fragaria x ananassa HOM05D006319 ORTHO05D007963 2.2e-25 120.2 82 69.5
Mapoly0092s0018 Marchantia polymorpha HOM05D006319 ORTHO05D007963 4.8e-25 119.0 156 42.9
TPR.G33590 Trifolium pratense HOM05D001650 ORTHO05D001592 6.3e-25 118.6 148 51.4
Cre16.g678851 Chlamydomonas reinhardtii HOM05D006319 ORTHO05D007963 1.2e-23 114.4 159 40.3
Manes.12G147800 Manihot esculenta HOM05D006319 ORTHO05D007963 2.0e-23 113.6 134 50.7
arahy.Tifrunner.gnm1.ann1.Q7YENP Arachis hypogaea HOM05D006319 ORTHO05D007963 1.7e-22 110.5 143 48.3
FAN26G1803 Fragaria x ananassa HOM05D001650 ORTHO05D001592 1.7e-22 110.5 81 66.7
arahy.Tifrunner.gnm1.ann1.PNID9I Arachis hypogaea HOM05D006319 ORTHO05D007963 2.2e-22 110.2 143 49.0
arahy.Tifrunner.gnm1.ann1.949H7S Arachis hypogaea HOM05D006319 ORTHO05D007963 9.4e-21 104.8 143 47.6
AagrBONN_evm.TU.Sc2ySwM_362.516 Anthoceros agrestis HOM05D005157 ORTHO05D006652 3.0e-19 99.8 96 57.3
Os04g0434900 Oryza sativa ssp. japonica HOM05D006319 ORTHO05D007963 5.7e-18 95.5 69 65.2
arahy.Tifrunner.gnm1.ann1.RE08FE Arachis hypogaea HOM05D006319 ORTHO05D007963 3.1e-16 89.7 130 42.3
MCO01G211 Micromonas commoda HOM05D006319 ORTHO05D007963 2.1e-12 77.0 128 39.1
PRCOL_00004434 Prasinoderma coloniale HOM05D006319 ORTHO05D007963 4.0e-11 72.8 114 41.2
arahy.Tifrunner.gnm1.ann1.I50TU7 Arachis hypogaea HOM05D006319 ORTHO05D007963 1.5e-10 70.9 81 49.4
CDE08G0611 Ceratophyllum demersum HOM05D006319 ORTHO05D007963 1.5e-10 70.9 91 48.4
MBI17_g01556_MAGBIO Magnolia biondii HOM05D006319 ORTHO05D007963 1.6e-07 60.8 111 37.8
MBI11_g02539_MAGBIO Magnolia biondii HOM05D006319 ORTHO05D007963 3.5e-07 59.7 109 42.2
Medtr7g023290 Medicago truncatula HOM05D002933 ORTHO05D007742 5.0e-06 55.8 188 23.9
Atru.chr12.543 Acer truncatum HOM05D002933 ORTHO05D007742 8.5e-06 55.1 131 26.0
VMungo1383G1673 Vigna mungo HOM05D002933 ORTHO05D007742 8.5e-06 55.1 174 23.6


User provided reference genes

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