Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G28410 Arabidopsis thaliana HOM05D005728 ORTHO05D005733 2.8e-58 228.4 116 100.0
AL4G21610 Arabidopsis lyrata HOM05D005728 ORTHO05D005733 1.9e-51 205.7 116 89.7
CARHR121360 Cardamine hirsuta HOM05D005728 ORTHO05D005733 7.4e-43 177.2 117 76.9
Sp4g11230 Schrenkiella parvula HOM05D005728 ORTHO05D005733 2.2e-42 175.6 119 75.6
BcaB06g28212 Brassica carinata HOM05D005728 ORTHO05D005733 2.8e-42 175.3 116 75.0
Carub.0004s0935 Capsella rubella HOM05D005728 ORTHO05D005733 2.8e-42 175.3 117 79.5
C04p22970 Brassica napus HOM05D005728 ORTHO05D005733 3.7e-42 174.9 116 75.9
A07p18980 Brassica napus HOM05D005728 ORTHO05D005733 1.1e-41 173.3 116 74.1
BraA07t29603Z Brassica rapa HOM05D005728 ORTHO05D005733 1.1e-41 173.3 116 74.1
BolC4t23791H Brassica oleracea HOM05D005728 ORTHO05D005733 2.4e-41 172.2 116 75.0
Thhalv10017443m.g Eutrema salsugineum HOM05D005728 ORTHO05D005733 4.1e-41 171.4 116 75.0
BcaC02g08173 Brassica carinata HOM05D005728 ORTHO05D005733 6.9e-41 170.6 116 72.4
C04p57650 Brassica napus HOM05D005728 ORTHO05D005733 6.9e-41 170.6 116 72.4
A04p21550 Brassica napus HOM05D005728 ORTHO05D005733 9.1e-41 170.2 116 70.7
BolC4t27283H Brassica oleracea HOM05D005728 ORTHO05D005733 9.1e-41 170.2 116 71.6
BraA04t17719Z Brassica rapa HOM05D005728 ORTHO05D005733 9.1e-41 170.2 116 70.7
Aa31LG5G7800 Aethionema arabicum HOM05D005728 ORTHO05D005733 6.7e-36 154.1 111 69.4
THA.LOC104800607 Tarenaya hassleriana HOM05D005728 ORTHO05D005733 2.2e-34 149.1 103 71.8
Thecc.09G340800 Theobroma cacao HOM05D005728 ORTHO05D005733 1.5e-22 109.8 111 52.3
Duzib150G0774 Durio zibethinus HOM05D005728 ORTHO05D005733 3.6e-21 105.1 117 52.1
MD03G1117800 Malus domestica HOM05D005728 ORTHO05D005733 8.8e-20 100.5 115 51.3
Duzib168G0076 Durio zibethinus HOM05D005728 ORTHO05D005733 2.6e-19 99.0 116 50.0
Sed0004216 Sechium edule HOM05D005728 ORTHO05D005733 5.7e-19 97.8 120 48.3
CiPaw.13G113100 Carya illinoinensis HOM05D005728 ORTHO05D005733 1.3e-18 96.7 105 52.4
Hma1.2p1_0058F.1_g032530 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 1.3e-18 96.7 115 52.2
Gorai.009G107100 Gossypium raimondii HOM05D005728 ORTHO05D005733 1.7e-18 96.3 106 51.9
MELO3C020692.2 Cucumis melo HOM05D005728 ORTHO05D005733 2.8e-18 95.5 115 45.2
Gohir.D05G102800 Gossypium hirsutum HOM05D005728 ORTHO05D005733 3.7e-18 95.1 106 50.9
Manes.04G021300 Manihot esculenta HOM05D005728 ORTHO05D005733 8.3e-18 94.0 116 50.0
CANSAT54G0421 Cannabis sativa HOM05D005728 ORTHO05D005733 1.8e-17 92.8 122 46.7
Gohir.A05G103100 Gossypium hirsutum HOM05D005728 ORTHO05D005733 4.1e-17 91.7 106 48.1
Atru.chr3.3629 Acer truncatum HOM05D005728 ORTHO05D005733 5.3e-17 91.3 117 46.2
Ciclev10029550m.g Citrus clementina HOM05D005728 ORTHO05D005733 7.0e-17 90.9 109 47.7
Gohir.D08G215300 Gossypium hirsutum HOM05D005728 ORTHO05D005733 9.1e-17 90.5 108 50.0
arahy.Tifrunner.gnm1.ann1.X5FS8C Arachis hypogaea HOM05D005728 ORTHO05D005733 1.2e-16 90.1 106 46.2
FvH4_3g32270 Fragaria vesca HOM05D005728 ORTHO05D005733 1.2e-16 90.1 115 45.2
FAN11G0683 Fragaria x ananassa HOM05D005728 ORTHO05D005733 1.2e-16 90.1 115 45.2
FAN25G2087 Fragaria x ananassa HOM05D005728 ORTHO05D005733 1.6e-16 89.7 115 46.1
QL01p022229 Quercus lobata HOM05D005728 ORTHO05D005733 1.6e-16 89.7 115 45.2
FAN16G2914 Fragaria x ananassa HOM05D005728 ORTHO05D005733 2.0e-16 89.4 115 45.2
FAN21G3175 Fragaria x ananassa HOM05D005728 ORTHO05D005733 2.0e-16 89.4 115 45.2
Glyma.12G172600 Glycine max HOM05D005728 ORTHO05D005733 2.7e-16 89.0 104 44.2
Potri.004G211000 Populus trichocarpa HOM05D005728 ORTHO05D005733 2.7e-16 89.0 111 47.7
RcHm_v2.0_Chr5g0059071 Rosa chinensis HOM05D005728 ORTHO05D005733 2.7e-16 89.0 115 46.1
CSS0032457 Camellia sinensis var. sinensis HOM05D005728 ORTHO05D005733 3.5e-16 88.6 115 47.8
Duzib170G0319 Durio zibethinus HOM05D005728 ORTHO05D005733 4.5e-16 88.2 117 46.2
Eucgr.B02498 Eucalyptus grandis HOM05D005728 ORTHO05D005733 4.5e-16 88.2 95 54.7
Gorai.004G228900 Gossypium raimondii HOM05D005728 ORTHO05D005733 4.5e-16 88.2 108 48.1
TAR629G0455 Trochodendron aralioides HOM05D005728 ORTHO05D005733 4.5e-16 88.2 106 46.2
Lsat_1_v5_gn_1_65300 Lactuca sativa HOM05D005728 ORTHO05D005733 5.9e-16 87.8 109 45.0
Glyma.13G326000 Glycine max HOM05D005728 ORTHO05D005733 7.7e-16 87.4 103 44.7
Potri.009G013800 Populus trichocarpa HOM05D005728 ORTHO05D005733 7.7e-16 87.4 112 48.2
Prupe.6G101500 Prunus persica HOM05D005728 ORTHO05D005733 7.7e-16 87.4 110 50.9
Phvul.005G135400 Phaseolus vulgaris HOM05D005728 ORTHO05D005733 1.0e-15 87.0 103 46.6
MD11G1136100 Malus domestica HOM05D005728 ORTHO05D005733 1.3e-15 86.7 115 47.8
ECA248G1213 Erigeron canadensis HOM05D005728 ORTHO05D005733 1.7e-15 86.3 114 43.0
TPR.G11537 Trifolium pratense HOM05D005728 ORTHO05D005733 1.7e-15 86.3 107 44.9
VMungo1080G1182 Vigna mungo HOM05D005728 ORTHO05D005733 1.7e-15 86.3 103 44.7
PGR102G3095 Punica granatum HOM05D005728 ORTHO05D005733 2.2e-15 85.9 118 44.9
RhsimUnG0058600 Rhododendron simsii HOM05D005728 ORTHO05D005733 2.2e-15 85.9 102 51.0
TWI31G0058 Tripterygium wilfordii HOM05D005728 ORTHO05D005733 2.2e-15 85.9 117 45.3
Haze_23825 Corylus avellana HOM05D005728 ORTHO05D005733 2.9e-15 85.5 115 45.2
Gohir.D03G134400 Gossypium hirsutum HOM05D005728 ORTHO05D005733 2.9e-15 85.5 116 44.8
Sed0003209 Sechium edule HOM05D005728 ORTHO05D005733 2.9e-15 85.5 117 43.6
Ca_01413_v3 Cicer arietinum L. HOM05D005728 ORTHO05D005733 3.8e-15 85.1 107 43.9
Gohir.A08G197900 Gossypium hirsutum HOM05D005728 ORTHO05D005733 3.8e-15 85.1 108 47.2
Sabra09G0007800 Salix brachista HOM05D005728 ORTHO05D005733 3.8e-15 85.1 104 46.2
Cfa011317 Carpinus fangiana HOM05D005728 ORTHO05D005733 8.5e-15 84.0 109 47.7
HanXRQChr01g0016901 Helianthus annuus HOM05D005728 ORTHO05D005733 8.5e-15 84.0 111 45.9
CsaV3_1G033730 Cucumis sativus L. HOM05D005728 ORTHO05D005733 1.5e-14 83.2 115 41.7
Rhsim01G0216400 Rhododendron simsii HOM05D005728 ORTHO05D005733 1.5e-14 83.2 98 52.0
Rhsim01G0216600 Rhododendron simsii HOM05D005728 ORTHO05D005733 1.5e-14 83.2 108 48.1
Glyma.12G067500 Glycine max HOM05D005728 ORTHO05D005733 3.2e-14 82.0 108 45.4
TWI79G1513 Tripterygium wilfordii HOM05D005728 ORTHO05D005733 3.2e-14 82.0 117 45.3
Lj3g0014252 Lotus japonicus HOM05D005728 ORTHO05D005733 4.2e-14 81.6 105 43.8
Manes.11G145200 Manihot esculenta HOM05D005728 ORTHO05D005733 9.4e-14 80.5 117 45.3
Glyma.11G146600 Glycine max HOM05D005728 ORTHO05D005733 1.6e-13 79.7 111 43.2
Ah.01g002910 Amaranthus hybridus HOM05D005728 ORTHO05D005733 2.1e-13 79.3 109 46.8
Sabra04G0142500 Salix brachista HOM05D005728 ORTHO05D005733 2.7e-13 79.0 108 46.3
Sc15g0002200 Simmondsia chinensis HOM05D005728 ORTHO05D005733 2.7e-13 79.0 113 39.8
Psat5g279440 Pisum sativum HOM05D005728 ORTHO05D005733 4.7e-13 78.2 115 40.9
Lalb_Chr19g0137271 Lupinus albus HOM05D005728 ORTHO05D005733 6.1e-13 77.8 106 42.5
Medtr2g094210 Medicago truncatula HOM05D005728 ORTHO05D005733 6.1e-13 77.8 109 43.1
Gohir.A03G033900 Gossypium hirsutum HOM05D005728 ORTHO05D005733 8.0e-13 77.4 96 45.8
Nn2g10793 Nelumbo nucifera HOM05D005728 ORTHO05D005733 8.0e-13 77.4 114 42.1
VMungo0403G0001 Vigna mungo HOM05D005728 ORTHO05D005733 1.0e-12 77.0 106 42.5
Hma1.2p1_2468F.1_g322665 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 1.4e-12 76.6 109 47.7
Medtr4g059310 Medicago truncatula HOM05D005728 ORTHO05D005733 1.4e-12 76.6 107 43.9
Nitab4.5_0000650g0250 Nicotiana tabacum HOM05D005728 ORTHO05D005733 2.3e-12 75.9 117 46.2
TPR.G15560 Trifolium pratense HOM05D005728 ORTHO05D005733 2.3e-12 75.9 106 43.4
Psat7g225080 Pisum sativum HOM05D005728 ORTHO05D005733 4.0e-12 75.1 106 43.4
Phvul.011G079200 Phaseolus vulgaris HOM05D005728 ORTHO05D005733 5.2e-12 74.7 118 39.8
Hma1.2p1_0055F.1_g031560 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 6.8e-12 74.3 109 46.8
Aqoxy1G01237 Aquilegia oxysepala HOM05D005728 ORTHO05D005733 2.6e-11 72.4 114 41.2
Nitab4.5_0012712g0010 Nicotiana tabacum HOM05D005728 ORTHO05D005733 2.6e-11 72.4 114 43.9
PSO063G1604 Papaver somniferum HOM05D005728 ORTHO05D005733 3.4e-11 72.0 121 39.7
Peaxi162Scf00270g00082 Petunia axillaris HOM05D005728 ORTHO05D005733 3.4e-11 72.0 112 43.8
Lalb_Chr14g0374671 Lupinus albus HOM05D005728 ORTHO05D005733 4.4e-11 71.6 109 42.2
EL10Ac9g22516 Beta vulgaris HOM05D005728 ORTHO05D005733 5.7e-11 71.2 115 40.0
Cpa.g.sc216.7 Carica papaya HOM05D005728 ORTHO05D005733 5.7e-11 71.2 109 40.4
PSO339G2100 Papaver somniferum HOM05D005728 ORTHO05D005733 5.7e-11 71.2 121 39.7
DCAR_018811 Daucus carota HOM05D005728 ORTHO05D005733 7.5e-11 70.9 115 39.1
CiPaw.14G080700 Carya illinoinensis HOM05D005728 ORTHO05D005733 1.3e-10 70.1 108 44.4
AUR62024979 Chenopodium quinoa HOM05D005728 ORTHO05D005733 2.8e-10 68.9 115 35.7
Lj3g0009869 Lotus japonicus HOM05D005728 ORTHO05D005733 6.3e-10 67.8 113 42.5
ECA238G1730 Erigeron canadensis HOM05D005728 ORTHO05D005733 1.4e-09 66.6 98 43.9
Solyc11g069420.2 Solanum lycopersicum HOM05D005728 ORTHO05D005733 1.8e-09 66.2 117 40.2
Sopen11g028140 Solanum pennellii HOM05D005728 ORTHO05D005733 1.8e-09 66.2 117 40.2
AUR62039639 Chenopodium quinoa HOM05D005728 ORTHO05D005733 2.4e-09 65.9 116 37.9
PGSC0003DMG400008077 Solanum tuberosum HOM05D005728 ORTHO05D005733 2.4e-09 65.9 120 40.8
Ca_19255_v3 Cicer arietinum L. HOM05D005728 ORTHO05D005733 4.1e-09 65.1 111 40.5
Cc01_g11120 Coffea canephora HOM05D005728 ORTHO05D005733 7.0e-09 64.3 114 43.0
Ah.01g014340 Amaranthus hybridus HOM05D005728 ORTHO05D005733 1.3e-07 60.1 64 48.4
A03p11060 Brassica napus HOM05D010860 ORTHO05D005733 1.7e-07 59.7 121 38.8
BraA03t10420Z Brassica rapa HOM05D010860 ORTHO05D005733 1.7e-07 59.7 121 38.8
MBI07_g19310_MAGBIO Magnolia biondii HOM05D005728 ORTHO05D005733 2.3e-07 59.3 130 36.9
SGA_v2.0_scaffold2G00890 Striga asiatica HOM05D005728 ORTHO05D005733 4.2e-06 55.1 109 36.7


User provided reference genes

Program Settings