Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G28390 Arabidopsis thaliana HOM05D003665 ORTHO05D004387 0.0e+00 1203.7 608 100.0
AL4G21640 Arabidopsis lyrata HOM05D003665 ORTHO05D004387 0.0e+00 1137.9 611 94.8
Carub.0004s0931 Capsella rubella HOM05D003665 ORTHO05D004387 0.0e+00 1115.9 614 92.7
Sp4g11190 Schrenkiella parvula HOM05D003665 ORTHO05D004387 0.0e+00 1089.7 615 90.4
Thhalv10016386m.g Eutrema salsugineum HOM05D003665 ORTHO05D004387 1.4e-310 1068.9 622 88.7
CARHR121340 Cardamine hirsuta HOM05D003665 ORTHO05D004387 4.1e-310 1067.4 615 89.6
BcaB01g03101 Brassica carinata HOM05D003665 ORTHO05D004387 4.7e-298 1027.3 620 86.1
BcaC01g04965 Brassica carinata HOM05D003665 ORTHO05D004387 3.4e-296 1021.1 612 86.8
BolC3t15507H Brassica oleracea HOM05D003665 ORTHO05D004387 1.2e-293 1012.7 623 85.2
BraA03t11853Z Brassica rapa HOM05D003665 ORTHO05D004387 2.0e-293 1011.9 622 84.6
A03p26380 Brassica napus HOM05D003665 ORTHO05D004387 3.0e-292 1008.1 622 84.4
C04p23090 Brassica napus HOM05D003665 ORTHO05D004387 2.5e-291 1005.0 618 84.6
C03p31650 Brassica napus HOM05D003665 ORTHO05D004387 2.1e-290 1001.9 623 84.4
BolC4t23802H Brassica oleracea HOM05D003665 ORTHO05D004387 4.7e-290 1000.7 624 83.7
Aa31LG5G7830 Aethionema arabicum HOM05D003665 ORTHO05D004387 4.9e-287 990.7 634 81.2
BcaB06g25420 Brassica carinata HOM05D003665 ORTHO05D004387 9.2e-286 986.5 612 84.5
A07p18960 Brassica napus HOM05D003665 ORTHO05D004387 7.1e-278 960.3 617 81.0
BraA07t29601Z Brassica rapa HOM05D003665 ORTHO05D004387 1.9e-267 925.6 623 78.2
THA.LOC104815747 Tarenaya hassleriana HOM05D003665 ORTHO05D004387 1.4e-257 892.9 623 75.9
THA.LOC104826364 Tarenaya hassleriana HOM05D003665 ORTHO05D004387 1.2e-256 889.8 619 76.6
Atru.chr3.3622 Acer truncatum HOM05D003665 ORTHO05D004387 9.1e-225 783.9 531 74.6
Duzib170G0108 Durio zibethinus HOM05D003665 ORTHO05D004387 1.1e-222 776.9 620 67.3
GSVIVG01025191001 Vitis vinifera HOM05D003665 ORTHO05D004387 1.2e-221 773.5 621 66.0
Ciclev10028088m.g Citrus clementina HOM05D003665 ORTHO05D004387 2.7e-221 772.3 619 66.7
TWI31G1339 Tripterygium wilfordii HOM05D003665 ORTHO05D004387 4.7e-221 771.5 621 66.8
Glyma.13G325700 Glycine max HOM05D003665 ORTHO05D004387 2.3e-220 769.2 503 75.1
Glyma.12G172200 Glycine max HOM05D003665 ORTHO05D004387 6.7e-220 767.7 501 75.0
Gorai.009G107400 Gossypium raimondii HOM05D003665 ORTHO05D004387 7.4e-219 764.2 618 66.2
Gohir.D05G103100 Gossypium hirsutum HOM05D003665 ORTHO05D004387 3.7e-218 761.9 618 66.2
SalBow3G4611 Salvia bowleyana HOM05D003665 ORTHO05D004387 1.4e-217 760.0 514 72.6
MD11G1136600 Malus domestica HOM05D003665 ORTHO05D004387 1.8e-217 759.6 616 65.1
Gohir.A03G033500 Gossypium hirsutum HOM05D003665 ORTHO05D004387 2.4e-217 759.2 623 65.2
Cfa011312 Carpinus fangiana HOM05D003665 ORTHO05D004387 3.1e-217 758.8 590 67.1
Sopen03g034790 Solanum pennellii HOM05D003665 ORTHO05D004387 7.0e-217 757.7 629 63.9
Duzib168G1080 Durio zibethinus HOM05D003665 ORTHO05D004387 9.1e-217 757.3 620 66.3
Gorai.003G141900 Gossypium raimondii HOM05D003665 ORTHO05D004387 9.1e-217 757.3 626 66.5
Phvul.005G134800 Phaseolus vulgaris HOM05D003665 ORTHO05D004387 1.6e-216 756.5 517 72.7
MSTRG.18661 Avicennia marina HOM05D003665 ORTHO05D004387 3.5e-216 755.4 615 65.7
CSS0007464 Camellia sinensis var. sinensis HOM05D003665 ORTHO05D004387 4.5e-216 755.0 635 64.3
RcHm_v2.0_Chr5g0058821 Rosa chinensis HOM05D003665 ORTHO05D004387 4.5e-216 755.0 614 66.1
Solyc03g115810.3 Solanum lycopersicum HOM05D003665 ORTHO05D004387 5.9e-216 754.6 629 63.8
Gohir.D03G134800 Gossypium hirsutum HOM05D003665 ORTHO05D004387 7.7e-216 754.2 625 65.8
Thecc.09G341400 Theobroma cacao HOM05D003665 ORTHO05D004387 7.7e-216 754.2 623 64.7
CANSAT54G1114 Cannabis sativa HOM05D003665 ORTHO05D004387 1.3e-215 753.4 615 64.2
Eucgr.B02502 Eucalyptus grandis HOM05D003665 ORTHO05D004387 1.3e-215 753.4 586 67.2
MELO3C004874.2 Cucumis melo HOM05D003665 ORTHO05D004387 1.7e-215 753.1 626 63.9
TAR623G1097 Trochodendron aralioides HOM05D003665 ORTHO05D004387 1.7e-215 753.1 635 63.1
CSS0036787 Camellia sinensis var. sinensis HOM05D003665 ORTHO05D004387 2.2e-215 752.7 603 66.7
CiPaw.13G113600 Carya illinoinensis HOM05D003665 ORTHO05D004387 6.5e-215 751.1 628 64.3
QL01p022122 Quercus lobata HOM05D003665 ORTHO05D004387 8.5e-215 750.7 679 60.7
ClCG01G013730 Citrullus lanatus HOM05D003665 ORTHO05D004387 1.1e-214 750.4 630 63.5
CsaV3_1G014040 Cucumis sativus L. HOM05D003665 ORTHO05D004387 1.1e-214 750.4 628 63.2
FAN25G3303 Fragaria x ananassa HOM05D003665 ORTHO05D004387 1.1e-214 750.4 613 65.1
Cc00_g12880 Coffea canephora HOM05D003665 ORTHO05D004387 3.2e-214 748.8 631 64.7
MBI05_g08786_MAGBIO Magnolia biondii HOM05D003665 ORTHO05D004387 7.2e-214 747.7 618 64.6
Gohir.A05G103400 Gossypium hirsutum HOM05D003665 ORTHO05D004387 9.4e-214 747.3 618 64.9
Potri.009G014400 Populus trichocarpa HOM05D003665 ORTHO05D004387 1.0e-212 743.8 555 69.0
FAN16G1206 Fragaria x ananassa HOM05D003665 ORTHO05D004387 4.0e-212 741.9 517 71.4
VMungo1080G0406 Vigna mungo HOM05D003665 ORTHO05D004387 6.7e-212 741.1 519 71.9
SGA_v2.0_scaffold97G29239 Striga asiatica HOM05D003665 ORTHO05D004387 1.5e-211 740.0 602 64.6
PGR119G2069 Punica granatum HOM05D003665 ORTHO05D004387 2.6e-211 739.2 561 67.9
Hma1.2p1_0058F.1_g032480 Hydrangea macrophylla HOM05D003665 ORTHO05D004387 3.3e-211 738.8 599 65.3
Cpa.g.sc216.2 Carica papaya HOM05D003665 ORTHO05D004387 5.7e-211 738.0 571 68.0
Nn2g12882 Nelumbo nucifera HOM05D003665 ORTHO05D004387 5.7e-211 738.0 566 67.0
TPR.G11547 Trifolium pratense HOM05D003665 ORTHO05D004387 7.5e-211 737.6 507 71.4
FvH4_3g32210 Fragaria vesca HOM05D003665 ORTHO05D004387 9.7e-211 737.3 618 63.8
Manes.11G145800 Manihot esculenta HOM05D003665 ORTHO05D004387 9.7e-211 737.3 625 63.8
MD03G1118200 Malus domestica HOM05D003665 ORTHO05D004387 1.7e-210 736.5 619 63.7
SGA_v2.0_scaffold61G21127 Striga asiatica HOM05D003665 ORTHO05D004387 1.7e-210 736.5 642 63.6
vmacro03198 Vaccinium macrocarpon HOM05D003665 ORTHO05D004387 2.2e-210 736.1 645 62.8
Sed0022671 Sechium edule HOM05D003665 ORTHO05D004387 2.8e-210 735.7 613 63.8
Ca_19262_v3 Cicer arietinum L. HOM05D003665 ORTHO05D004387 8.2e-210 734.2 476 74.2
Peaxi162Scf00274g00347 Petunia axillaris HOM05D003665 ORTHO05D004387 8.2e-210 734.2 625 63.7
Phvul.011G079600 Phaseolus vulgaris HOM05D003665 ORTHO05D004387 8.2e-210 734.2 519 70.5
Migut.D02227 Erythranthe guttata HOM05D003665 ORTHO05D004387 1.4e-209 733.4 638 61.9
FAN11G0686 Fragaria x ananassa HOM05D003665 ORTHO05D004387 1.4e-209 733.4 630 62.9
FAN21G1776 Fragaria x ananassa HOM05D003665 ORTHO05D004387 1.8e-209 733.0 607 64.3
VMungo1127G1530 Vigna mungo HOM05D003665 ORTHO05D004387 4.1e-209 731.9 524 69.7
Medtr2g094470 Medicago truncatula HOM05D003665 ORTHO05D004387 7.0e-209 731.1 512 71.5
CiPaw.14G080900 Carya illinoinensis HOM05D003665 ORTHO05D004387 1.2e-208 730.3 617 63.7
Psat5g278960 Pisum sativum HOM05D003665 ORTHO05D004387 2.7e-208 729.2 507 70.8
Gohir.A08G198200 Gossypium hirsutum HOM05D003665 ORTHO05D004387 2.2e-207 726.1 619 64.0
HanXRQChr01g0019371 Helianthus annuus HOM05D003665 ORTHO05D004387 8.5e-207 724.2 605 64.0
Lj3g0004290 Lotus japonicus HOM05D003665 ORTHO05D004387 8.5e-207 724.2 540 68.0
Prupe.6G102100 Prunus persica HOM05D003665 ORTHO05D004387 2.5e-206 722.6 615 63.4
PSO339G3164 Papaver somniferum HOM05D003665 ORTHO05D004387 4.2e-206 721.8 510 70.2
Haze_23819 Corylus avellana HOM05D003665 ORTHO05D004387 5.5e-206 721.5 656 60.4
Medtr4g059000 Medicago truncatula HOM05D003665 ORTHO05D004387 7.2e-206 721.1 527 68.3
ECA248G0778 Erigeron canadensis HOM05D003665 ORTHO05D004387 1.2e-205 720.3 625 62.4
PSO384G0045 Papaver somniferum HOM05D003665 ORTHO05D004387 2.7e-205 719.2 507 69.8
EL10Ac2g02422 Beta vulgaris HOM05D003665 ORTHO05D004387 3.6e-205 718.8 564 66.1
Potri.004G211200 Populus trichocarpa HOM05D003665 ORTHO05D004387 6.1e-205 718.0 609 64.2
Gorai.004G229200 Gossypium raimondii HOM05D003665 ORTHO05D004387 5.2e-204 714.9 617 63.5
ECA238G1380 Erigeron canadensis HOM05D003665 ORTHO05D004387 6.8e-204 714.5 604 62.1
Sabra09G0007600 Salix brachista HOM05D003665 ORTHO05D004387 3.4e-203 712.2 671 58.9
Lj3g0015527 Lotus japonicus HOM05D003665 ORTHO05D004387 6.3e-202 708.0 517 69.4
TAR369G0153 Trochodendron aralioides HOM05D003665 ORTHO05D004387 1.8e-201 706.4 632 61.4
Lalb_Chr22g0350251 Lupinus albus HOM05D003665 ORTHO05D004387 6.5e-199 698.0 560 65.5
Lalb_Chr24g0394651 Lupinus albus HOM05D003665 ORTHO05D004387 6.5e-199 698.0 551 65.5
arahy.Tifrunner.gnm1.ann1.RTB9TW Arachis hypogaea HOM05D003665 ORTHO05D004387 5.5e-198 694.9 593 62.2
Lsat_1_v5_gn_2_100120 Lactuca sativa HOM05D003665 ORTHO05D004387 5.5e-198 694.9 609 60.8
arahy.Tifrunner.gnm1.ann1.IYQC31 Arachis hypogaea HOM05D003665 ORTHO05D004387 1.6e-197 693.3 595 62.0
HanXRQChr14g0452781 Helianthus annuus HOM05D003665 ORTHO05D004387 2.1e-197 693.0 523 65.0
Nitab4.5_0001997g0130 Nicotiana tabacum HOM05D003665 ORTHO05D004387 2.8e-197 692.6 596 61.4
Aqoxy4G03025 Aquilegia oxysepala HOM05D003665 ORTHO05D004387 1.8e-196 689.9 563 63.4
Lalb_Chr19g0137231 Lupinus albus HOM05D003665 ORTHO05D004387 2.3e-196 689.5 505 69.1
arahy.Tifrunner.gnm1.ann1.567MYZ Arachis hypogaea HOM05D003665 ORTHO05D004387 9.8e-195 684.1 460 72.6
Actinidia24103 Actinidia chinensis HOM05D003665 ORTHO05D004387 6.3e-194 681.4 569 64.3
Dinv32740 Davidia involucrata HOM05D003665 ORTHO05D004387 1.1e-193 680.6 627 60.6
Lsat_1_v5_gn_1_64201 Lactuca sativa HOM05D003665 ORTHO05D004387 4.1e-193 678.7 617 59.3
SEGI_12034 Sequoiadendron giganteum HOM05D003665 ORTHO05D004387 1.2e-192 677.2 557 62.3
Dinv09884 Davidia involucrata HOM05D003665 ORTHO05D004387 7.8e-192 674.5 570 64.6
TWI79G0002 Tripterygium wilfordii HOM05D003665 ORTHO05D004387 6.6e-191 671.4 615 60.2
Oeu030188.3 Olea europaea HOM05D003665 ORTHO05D004387 8.6e-191 671.0 682 55.4
COL.COLO4_18330 Corchorus olitorius HOM05D003665 ORTHO05D004387 1.5e-190 670.2 614 60.7
Nitab4.5_0001195g0040 Nicotiana tabacum HOM05D003665 ORTHO05D004387 1.4e-188 663.7 620 58.1
ATR0033G036 Amborella trichopoda HOM05D003665 ORTHO05D004387 4.0e-188 662.1 488 68.0
Os01g0976000 Oryza sativa ssp. japonica HOM05D003665 ORTHO05D004387 4.0e-188 662.1 600 58.2
SEGI_16973 Sequoiadendron giganteum HOM05D003665 ORTHO05D004387 7.0e-185 651.4 449 68.4
arahy.Tifrunner.gnm1.ann1.B5LWM3 Arachis hypogaea HOM05D003665 ORTHO05D004387 1.0e-183 647.5 460 70.2
Psat0s134g0040 Pisum sativum HOM05D003665 ORTHO05D004387 1.3e-183 647.1 475 68.2
PGR102G1414 Punica granatum HOM05D003665 ORTHO05D004387 5.6e-182 641.7 557 61.4
Sc06g0010260 Simmondsia chinensis HOM05D003665 ORTHO05D004387 1.8e-180 636.7 425 74.1
Ca_01409_v3 Cicer arietinum L. HOM05D003665 ORTHO05D004387 2.8e-173 612.8 463 66.7
DCAR_006064 Daucus carota HOM05D003665 ORTHO05D004387 1.4e-172 610.5 589 58.9
Actinidia07137 Actinidia chinensis HOM05D003665 ORTHO05D004387 4.0e-172 609.0 579 59.6
Mapoly0115s0070 Marchantia polymorpha HOM05D003665 ORTHO05D004387 1.5e-171 607.1 600 53.5
HPP92_006598 Vanilla planifolia HOM05D003665 ORTHO05D004387 3.9e-167 592.4 609 55.0
SMO356G0046 Selaginella moellendorffii HOM05D003665 ORTHO05D004387 1.5e-166 590.5 561 54.2
Hund03712 Selenicereus undatus HOM05D003665 ORTHO05D004387 1.5e-166 590.5 379 74.9
Gohir.D08G215600 Gossypium hirsutum HOM05D003665 ORTHO05D004387 3.1e-164 582.8 534 61.6
Ah.12g061180 Amaranthus hybridus HOM05D003665 ORTHO05D004387 2.1e-160 570.1 432 67.1
Nitab4.5_0001211g0250 Nicotiana tabacum HOM05D003665 ORTHO05D004387 2.3e-159 566.6 645 52.4
BcaB06g25423 Brassica carinata HOM05D003665 ORTHO05D004387 4.7e-157 558.9 396 77.5
AagrBONN_evm.TU.Sc2ySwM_117.1231 Anthoceros agrestis HOM05D003665 ORTHO05D004387 1.4e-156 557.4 488 55.5
Pp3c3_30360 Physcomitrium patens HOM05D003665 ORTHO05D004387 2.9e-154 549.7 607 49.4
AUR62037705 Chenopodium quinoa HOM05D003665 ORTHO05D004387 2.4e-153 546.6 505 58.0
AUR62020295 Chenopodium quinoa HOM05D003665 ORTHO05D004387 1.2e-152 544.3 456 61.8
Lj2C1027G11 Lonicera japonica HOM05D003665 ORTHO05D004387 3.6e-149 532.7 625 52.3
AagrBONN_evm.TU.Sc2ySwM_228.3586 Anthoceros agrestis HOM05D003665 ORTHO05D004387 4.0e-148 529.3 473 55.8
Nitab4.5_0005900g0050 Nicotiana tabacum HOM05D003665 ORTHO05D004387 2.0e-147 526.9 597 52.4
unitig_899.g14918 Utricularia gibba HOM05D003665 ORTHO05D004387 4.5e-139 499.2 503 53.5
Actinidia13994 Actinidia chinensis HOM05D003665 ORTHO05D004387 3.0e-135 486.5 331 73.4
Actinidia12926 Actinidia chinensis HOM05D003665 ORTHO05D004387 5.6e-134 482.3 332 72.6
Sabra04G0142700 Salix brachista HOM05D003665 ORTHO05D004387 2.8e-133 479.9 377 65.8
Pp3c10_13820 Physcomitrium patens HOM05D003665 ORTHO05D004387 4.0e-132 476.1 553 48.1
CDE08G0353 Ceratophyllum demersum HOM05D003665 ORTHO05D004387 9.7e-126 454.9 313 70.6
Peaxi162Scf00106g00431 Petunia axillaris HOM05D003665 ORTHO05D004387 6.9e-124 448.7 467 54.2
Zm00001eb139700 Zea mays HOM05D003665 ORTHO05D004387 1.0e-122 444.9 325 64.3
PGSC0003DMG400019504 Solanum tuberosum HOM05D003665 ORTHO05D004387 1.9e-113 414.1 393 59.8
Atru.chr3.3619 Acer truncatum HOM05D003665 ORTHO05D004387 6.5e-98 362.5 248 70.2
CAN.G479.67 Capsicum annuum HOM05D003665 ORTHO05D004387 4.2e-97 359.8 357 57.4
CDE02G0373 Ceratophyllum demersum HOM05D003665 ORTHO05D004387 1.0e-79 302.0 217 66.8
CBR_g29308 Chara braunii HOM05D000019 ORTHO05D000002 8.9e-71 272.3 211 62.6
CDE08G1291 Ceratophyllum demersum HOM05D003665 ORTHO05D004387 1.8e-63 248.1 297 52.2
Lsat_1_v5_gn_8_29480 Lactuca sativa HOM05D003665 ORTHO05D004387 3.7e-61 240.4 163 72.4
Cre03.g154500 Chlamydomonas reinhardtii HOM05D003665 ORTHO05D004387 8.1e-56 222.6 270 44.4
CDE02G1163 Ceratophyllum demersum HOM05D003665 ORTHO05D004387 9.2e-52 209.1 219 53.9
MCO05G084 Micromonas commoda HOM05D003665 ORTHO05D004387 1.2e-48 198.7 529 28.0
Lsat_1_v5_gn_6_80301 Lactuca sativa HOM05D003665 ORTHO05D004387 2.1e-48 198.0 140 69.3
Cfa025752 Carpinus fangiana HOM05D003665 ORTHO05D004387 4.7e-48 196.8 459 29.8
SHI09320 Sapria himalayana HOM05D003665 ORTHO05D004387 6.2e-48 196.4 181 55.2
Lsat_1_v5_gn_6_45780 Lactuca sativa HOM05D003665 ORTHO05D004387 2.4e-47 194.5 133 70.7
Actinidia13995 Actinidia chinensis HOM05D003665 ORTHO05D004387 2.0e-46 191.4 105 87.6
CAN.G479.68 Capsicum annuum HOM05D000222 ORTHO05D004387 4.4e-46 190.3 152 61.2
Lsat_1_v5_gn_8_31621 Lactuca sativa HOM05D003665 ORTHO05D004387 7.6e-46 189.5 132 70.5
Duzib235G1059 Durio zibethinus HOM05D003665 ORTHO05D004387 1.2e-43 182.2 193 57.5
Lsat_1_v5_gn_6_39960 Lactuca sativa HOM05D003665 ORTHO05D004387 1.9e-41 174.9 123 69.9
TPR.G35439 Trifolium pratense HOM05D003665 ORTHO05D004387 2.5e-41 174.5 140 62.1
arahy.Tifrunner.gnm1.ann1.3H693L Arachis hypogaea HOM05D003665 ORTHO05D004387 7.3e-33 146.4 126 57.9
Duzib084G1104 Durio zibethinus HOM05D003665 ORTHO05D004387 4.9e-29 133.7 97 68.0
SHI09317 Sapria himalayana HOM05D003665 ORTHO05D004387 6.7e-26 123.2 78 73.1
BolC4t27275H Brassica oleracea HOM05D003665 ORTHO05D004387 8.7e-26 122.9 124 57.3
TPR.G15544 Trifolium pratense HOM05D003665 ORTHO05D004387 1.3e-24 119.0 69 76.8
Ca_23093_v3 Cicer arietinum L. HOM05D003665 ORTHO05D004387 2.1e-24 118.2 65 86.2
Glyma.11G146000 Glycine max HOM05D003665 ORTHO05D004387 1.1e-23 115.9 112 58.9
VMungo1074G0001 Vigna mungo HOM05D003665 ORTHO05D004387 1.6e-19 102.1 116 50.0
SHI09315 Sapria himalayana HOM05D003665 ORTHO05D004387 2.1e-19 101.7 53 88.7
VMungo0225G0001 Vigna mungo HOM05D003665 ORTHO05D004387 2.7e-19 101.3 68 70.6
SHI09316 Sapria himalayana HOM05D003665 ORTHO05D004387 6.0e-19 100.1 63 71.4
Lalb_Chr22g0350671 Lupinus albus HOM05D003665 ORTHO05D004387 7.9e-11 73.2 43 81.4
BraA04t17717Z Brassica rapa HOM05D003665 ORTHO05D040370 5.1e-10 70.5 64 59.4
C04p57550 Brassica napus HOM05D003665 ORTHO05D040370 2.8e-08 64.7 41 70.7
HanXRQChr04g0103101 Helianthus annuus HOM05D003665 ORTHO05D004387 5.9e-06 57.0 36 66.7
Lsat_1_v5_gn_9_20280 Lactuca sativa HOM05D005041 ORTHO05D002973 1.0e-05 56.2 32 84.4


User provided reference genes

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