Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G28330 Arabidopsis thaliana HOM05D009615 ORTHO05D011760 1.3e-79 299.7 155 100.0
AL4G21750 Arabidopsis lyrata HOM05D009615 ORTHO05D011760 1.3e-63 246.5 155 85.8
Carub.0004s0923 Capsella rubella HOM05D009615 ORTHO05D011760 1.2e-53 213.4 163 76.7
CARHR121260 Cardamine hirsuta HOM05D009615 ORTHO05D011760 2.3e-47 192.6 158 66.5
Sp4g11120 Schrenkiella parvula HOM05D009615 ORTHO05D011760 1.2e-43 180.3 160 62.5
Thhalv10017369m.g Eutrema salsugineum HOM05D009615 ORTHO05D011760 2.6e-43 179.1 160 66.9
C04p23190 Brassica napus HOM05D009615 ORTHO05D011760 4.6e-24 115.2 165 49.1
BolC4t23814H Brassica oleracea HOM05D009615 ORTHO05D011760 5.1e-23 111.7 157 49.0
A07p18870 Brassica napus HOM05D009615 ORTHO05D011760 6.7e-23 111.3 157 49.7
BraA07t29594Z Brassica rapa HOM05D009615 ORTHO05D011760 1.1e-22 110.5 157 49.7
BolC4t23815H Brassica oleracea HOM05D009615 ORTHO05D011760 1.6e-21 106.7 157 48.4
Aa31LG5G7890 Aethionema arabicum HOM05D009615 ORTHO05D011760 2.8e-21 105.9 151 45.0
A07p18880 Brassica napus HOM05D009615 ORTHO05D011760 1.2e-19 100.5 157 44.6
BraA07t29596Z Brassica rapa HOM05D009615 ORTHO05D011760 1.2e-19 100.5 157 44.6
THA.LOC104806658 Tarenaya hassleriana HOM05D009615 ORTHO05D011760 6.5e-18 94.7 155 41.3
AL1G18370 Arabidopsis lyrata HOM05D009615 ORTHO05D011760 5.1e-15 85.1 112 43.8
Carub.0001s0738 Capsella rubella HOM05D009615 ORTHO05D011760 1.9e-14 83.2 107 47.7
AT1G08035 Arabidopsis thaliana HOM05D009615 ORTHO05D011760 5.7e-14 81.6 112 43.8
Thhalv10009338m.g Eutrema salsugineum HOM05D009615 ORTHO05D011760 2.8e-13 79.3 125 42.4
BcaB03g13355 Brassica carinata HOM05D009615 ORTHO05D011760 6.3e-13 78.2 107 43.9
CARHR007810 Cardamine hirsuta HOM05D009615 ORTHO05D011760 1.4e-12 77.0 116 43.1
TWI74G0480 Tripterygium wilfordii HOM05D007287 ORTHO05D008965 1.8e-12 76.6 117 37.6
C08p03480 Brassica napus HOM05D009615 ORTHO05D011760 4.1e-12 75.5 111 41.4
BolC8t47150H Brassica oleracea HOM05D009615 ORTHO05D011760 4.1e-12 75.5 111 41.4
Cfa016991 Carpinus fangiana HOM05D007287 ORTHO05D008965 4.1e-12 75.5 81 50.6
Duzib268G0768 Durio zibethinus HOM05D007287 ORTHO05D008965 4.1e-12 75.5 152 38.2
Haze_21214 Corylus avellana HOM05D007287 ORTHO05D008965 1.5e-11 73.6 81 50.6
Sp1g06660 Schrenkiella parvula HOM05D009615 ORTHO05D011760 2.6e-11 72.8 159 35.8
THA.LOC104806274 Tarenaya hassleriana HOM05D009615 ORTHO05D011760 2.6e-11 72.8 138 38.4
A08p35360 Brassica napus HOM05D009615 ORTHO05D011760 4.5e-11 72.0 158 34.8
BraA08t35442Z Brassica rapa HOM05D009615 ORTHO05D011760 5.9e-11 71.6 158 34.8
TWI77G0104 Tripterygium wilfordii HOM05D007287 ORTHO05D008965 2.2e-10 69.7 81 45.7
Atru.chr8.50 Acer truncatum HOM05D007287 ORTHO05D008965 2.9e-10 69.3 81 48.1
Lj3g0024711 Lotus japonicus HOM05D007287 ORTHO05D008965 6.5e-10 68.2 91 46.2
Manes.09G120600 Manihot esculenta HOM05D007287 ORTHO05D008965 8.5e-10 67.8 148 38.5
Thecc.04G001200 Theobroma cacao HOM05D007287 ORTHO05D008965 8.5e-10 67.8 167 34.1
Manes.08G167300 Manihot esculenta HOM05D007287 ORTHO05D008965 1.1e-09 67.4 141 36.9
Ciclev10012636m.g Citrus clementina HOM05D007287 ORTHO05D008965 1.4e-09 67.0 91 41.8
Gohir.A02G000300 Gossypium hirsutum HOM05D007287 ORTHO05D008965 3.2e-09 65.9 81 51.9
Gohir.D02G000600 Gossypium hirsutum HOM05D007287 ORTHO05D008965 4.2e-09 65.5 81 51.9
Gorai.005G001000 Gossypium raimondii HOM05D007287 ORTHO05D008965 4.2e-09 65.5 81 51.9
QL07p030582 Quercus lobata HOM05D007287 ORTHO05D008965 1.2e-08 63.9 150 33.3
QL07p031465 Quercus lobata HOM05D007287 ORTHO05D008965 1.2e-08 63.9 150 33.3
Prupe.6G299000 Prunus persica HOM05D007287 ORTHO05D008965 6.1e-08 61.6 143 35.7
Glyma.03G000900 Glycine max HOM05D007287 ORTHO05D008965 7.9e-08 61.2 80 45.0
Glyma.16G221800 Glycine max HOM05D007287 ORTHO05D008965 1.0e-07 60.8 136 34.6
CANSAT01G2619 Cannabis sativa HOM05D007287 ORTHO05D008965 3.0e-07 59.3 86 40.7
ClCG04G006100 Citrullus lanatus HOM05D007287 ORTHO05D008965 3.0e-07 59.3 82 45.1
Rhsim04G0120200 Rhododendron simsii HOM05D007287 ORTHO05D008965 3.0e-07 59.3 96 42.7
PGR031G1010 Punica granatum HOM05D007287 ORTHO05D008965 3.9e-07 58.9 120 33.3
Lalb_Chr13g0290321 Lupinus albus HOM05D007287 ORTHO05D008965 1.1e-06 57.4 89 42.7
Eucgr.K01309 Eucalyptus grandis HOM05D007287 ORTHO05D008965 2.5e-06 56.2 122 33.6
Gohir.A05G415801 Gossypium hirsutum HOM05D007287 ORTHO05D008965 3.3e-06 55.8 80 45.0
Potri.006G112600 Populus trichocarpa HOM05D007287 ORTHO05D008965 3.3e-06 55.8 144 33.3
Sabra04G0158300 Salix brachista HOM05D007287 ORTHO05D008965 3.3e-06 55.8 121 34.7
Potri.016G142100 Populus trichocarpa HOM05D007287 ORTHO05D008965 5.7e-06 55.1 85 41.2
CsaV3_4G027460 Cucumis sativus L. HOM05D007287 ORTHO05D008965 7.4e-06 54.7 157 33.1
ECA248G0550 Erigeron canadensis HOM05D007287 ORTHO05D008965 7.4e-06 54.7 120 35.8
Gohir.A05G415501 Gossypium hirsutum HOM05D007287 ORTHO05D008965 7.4e-06 54.7 129 34.1


User provided reference genes

Program Settings