Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G28050 Arabidopsis thaliana HOM05D004255 ORTHO05D004815 2.0e-195 686.0 463 100.0
Carub.0004s0880 Capsella rubella HOM05D004255 ORTHO05D004815 4.3e-142 508.8 463 81.2
AL4G22170 Arabidopsis lyrata HOM05D004255 ORTHO05D004815 2.0e-139 500.0 445 84.3
CARHR120730 Cardamine hirsuta HOM05D004255 ORTHO05D004815 1.6e-125 453.8 458 77.7
Thhalv10016624m.g Eutrema salsugineum HOM05D004255 ORTHO05D004815 7.1e-113 411.8 457 73.5
Sp4g10830 Schrenkiella parvula HOM05D004255 ORTHO05D004815 8.2e-109 398.3 269 76.2
BcaB02g10133 Brassica carinata HOM05D004255 ORTHO05D004815 5.9e-99 365.5 459 69.3
Aa31LG5G8100 Aethionema arabicum HOM05D004255 ORTHO05D004815 3.7e-85 319.7 457 63.9
Thecc.09G346900 Theobroma cacao HOM05D004255 ORTHO05D004815 6.1e-56 222.6 241 49.8
CANSAT54G2410 Cannabis sativa HOM05D004255 ORTHO05D004815 1.0e-55 221.9 271 46.1
Lsat_1_v5_gn_2_99540 Lactuca sativa HOM05D004255 ORTHO05D004815 4.9e-53 213.0 292 40.8
BraA07t29569Z Brassica rapa HOM05D004255 ORTHO05D004815 2.4e-52 210.7 172 66.3
RcHm_v2.0_Chr5g0058011 Rosa chinensis HOM05D004255 ORTHO05D004815 2.4e-52 210.7 298 40.9
Cfa011366 Carpinus fangiana HOM05D004255 ORTHO05D004815 4.1e-52 209.9 302 44.4
Duzib170G0445 Durio zibethinus HOM05D004255 ORTHO05D004815 3.6e-48 196.8 242 45.9
TWI75G0856 Tripterygium wilfordii HOM05D004255 ORTHO05D004815 8.9e-47 192.2 244 46.3
Duzib168G2269 Durio zibethinus HOM05D004255 ORTHO05D004815 1.5e-46 191.4 250 46.4
Cpa.g.sc65.27 Carica papaya HOM05D004255 ORTHO05D004815 2.9e-45 187.2 196 51.5
C04p23520 Brassica napus HOM05D004255 ORTHO05D004815 3.2e-44 183.7 181 58.0
BolC4t23855H Brassica oleracea HOM05D004255 ORTHO05D004815 4.1e-44 183.3 200 55.5
QL09p049934 Quercus lobata HOM05D004255 ORTHO05D004815 4.1e-44 183.3 193 53.9
Haze_23917 Corylus avellana HOM05D004255 ORTHO05D004815 1.9e-41 174.5 206 48.1
ClCG02G021360 Citrullus lanatus HOM05D004255 ORTHO05D004815 4.3e-41 173.3 231 47.6
Gorai.009G110100 Gossypium raimondii HOM05D004255 ORTHO05D004815 5.2e-39 166.4 209 44.0
Gohir.A05G106000 Gossypium hirsutum HOM05D004255 ORTHO05D004815 8.9e-39 165.6 209 43.5
CiPaw.14G077900 Carya illinoinensis HOM05D004255 ORTHO05D004815 2.0e-38 164.5 209 45.5
COL.COLO4_18281 Corchorus olitorius HOM05D004255 ORTHO05D004815 1.7e-37 161.4 204 44.6
PGR102G0358 Punica granatum HOM05D004255 ORTHO05D004815 3.7e-37 160.2 281 36.7
QL01p037114 Quercus lobata HOM05D004255 ORTHO05D004815 8.3e-37 159.1 291 37.8
DCAR_014992 Daucus carota HOM05D004255 ORTHO05D004815 7.1e-36 156.0 214 40.2
Glyma.19G000100 Glycine max HOM05D004255 ORTHO05D004815 2.1e-35 154.5 247 36.4
CSS0008426 Camellia sinensis var. sinensis HOM05D004255 ORTHO05D004815 4.6e-35 153.3 226 42.9
Ah.08g211800 Amaranthus hybridus HOM05D004255 ORTHO05D004815 1.7e-34 151.4 290 31.7
MD03G1124300 Malus domestica HOM05D004255 ORTHO05D004815 1.7e-34 151.4 197 43.7
Oeu034113.1 Olea europaea HOM05D004255 ORTHO05D004815 2.3e-34 151.0 210 41.9
BcaC02g10932 Brassica carinata HOM05D004255 ORTHO05D004815 3.0e-34 150.6 110 71.8
AUR62022768 Chenopodium quinoa HOM05D004255 ORTHO05D004815 5.1e-34 149.8 240 38.3
Prupe.6G107000 Prunus persica HOM05D004255 ORTHO05D004815 8.6e-34 149.1 218 40.8
Dinv37304 Davidia involucrata HOM05D004255 ORTHO05D004815 2.5e-33 147.5 194 41.2
Hma1.2p1_0297F.1_g117010 Hydrangea macrophylla HOM05D004255 ORTHO05D004815 2.5e-33 147.5 214 39.3
Peaxi162Scf00311g00013 Petunia axillaris HOM05D004255 ORTHO05D004815 3.3e-33 147.1 239 37.2
VMungo0720G0391 Vigna mungo HOM05D004255 ORTHO05D004815 4.3e-33 146.7 280 32.1
Medtr1g045880 Medicago truncatula HOM05D004255 ORTHO05D004815 2.1e-32 144.4 230 36.1
Phvul.007G232500 Phaseolus vulgaris HOM05D004255 ORTHO05D004815 2.1e-32 144.4 293 32.1
QL07p044001 Quercus lobata HOM05D004255 ORTHO05D004815 3.6e-32 143.7 199 40.7
Manes.13G072800 Manihot esculenta HOM05D004255 ORTHO05D004815 4.7e-32 143.3 236 37.3
Solyc10g084090.3 Solanum lycopersicum HOM05D004255 ORTHO05D004815 4.7e-32 143.3 209 38.3
TPR.G23963 Trifolium pratense HOM05D004255 ORTHO05D004815 4.7e-32 143.3 226 37.2
Nitab4.5_0001297g0100 Nicotiana tabacum HOM05D004255 ORTHO05D004815 5.2e-31 139.8 193 38.3
CsaV3_3G035890 Cucumis sativus L. HOM05D004255 ORTHO05D004815 8.9e-31 139.0 265 35.1
HanXRQChr07g0206501 Helianthus annuus HOM05D004255 ORTHO05D004815 1.5e-30 138.3 229 36.2
Sopen10g033550 Solanum pennellii HOM05D004255 ORTHO05D004815 2.0e-30 137.9 232 36.2
MELO3C009348.2 Cucumis melo HOM05D004255 ORTHO05D004815 3.4e-30 137.1 265 35.8
Nitab4.5_0005518g0020 Nicotiana tabacum HOM05D004255 ORTHO05D004815 3.4e-30 137.1 240 35.0
TAR633G1109 Trochodendron aralioides HOM05D004255 ORTHO05D004815 4.4e-30 136.7 210 37.6
Cc06_g04130 Coffea canephora HOM05D004255 ORTHO05D004815 5.8e-30 136.3 202 38.1
FvH4_6g16190 Fragaria vesca HOM05D004255 ORTHO05D004815 7.6e-30 136.0 250 34.0
Lsat_1_v5_gn_2_106641 Lactuca sativa HOM05D004255 ORTHO05D004815 1.3e-29 135.2 214 37.9
Lj1A198G34 Lonicera japonica HOM05D004255 ORTHO05D004815 2.2e-29 134.4 204 38.7
Solyc06g010270.1 Solanum lycopersicum HOM05D004255 ORTHO05D004815 2.2e-29 134.4 218 37.6
arahy.Tifrunner.gnm1.ann1.RBUQ0I Arachis hypogaea HOM05D004255 ORTHO05D004815 3.8e-29 133.7 258 32.9
FAN14G1284 Fragaria x ananassa HOM05D004255 ORTHO05D004815 4.9e-29 133.3 255 33.3
FAN05G2535 Fragaria x ananassa HOM05D004255 ORTHO05D004815 1.1e-28 132.1 255 32.9
Sc20g0005250 Simmondsia chinensis HOM05D004255 ORTHO05D004815 1.1e-28 132.1 241 34.4
Sc15g0001630 Simmondsia chinensis HOM05D004255 ORTHO05D004815 1.9e-28 131.3 197 39.1
Lj4g0021155 Lotus japonicus HOM05D004255 ORTHO05D004815 2.4e-28 131.0 273 32.2
Solyc06g010275.1 Solanum lycopersicum HOM05D004255 ORTHO05D004815 3.2e-28 130.6 195 38.5
CiPaw.09G173800 Carya illinoinensis HOM05D004255 ORTHO05D004815 4.1e-28 130.2 242 36.4
Sopen06g005230 Solanum pennellii HOM05D004255 ORTHO05D004815 4.1e-28 130.2 205 37.1
Duzib106G1941 Durio zibethinus HOM05D004255 ORTHO05D004815 5.4e-28 129.8 192 37.5
Cc01_g10670 Coffea canephora HOM05D004255 ORTHO05D004815 7.1e-28 129.4 185 38.9
TAR633G2036 Trochodendron aralioides HOM05D004255 ORTHO05D004815 7.1e-28 129.4 197 37.6
Oeu047722.1 Olea europaea HOM05D004255 ORTHO05D004815 3.5e-27 127.1 189 36.0
CAN.G1169.8 Capsicum annuum HOM05D004255 ORTHO05D004815 4.6e-27 126.7 250 33.2
Aa31LG5G4720 Aethionema arabicum HOM05D004255 ORTHO05D004815 1.3e-26 125.2 201 37.3
Ciclev10011284m.g Citrus clementina HOM05D004255 ORTHO05D004815 1.3e-26 125.2 206 34.5
RcHm_v2.0_Chr5g0057961 Rosa chinensis HOM05D004255 ORTHO05D004815 2.3e-26 124.4 224 35.3
RcHm_v2.0_Chr5g0057911 Rosa chinensis HOM05D004255 ORTHO05D004815 3.0e-26 124.0 222 35.1
Atru.chr8.1831 Acer truncatum HOM05D004255 ORTHO05D004815 6.6e-26 122.9 177 38.4
Aqoxy1G01172 Aquilegia oxysepala HOM05D004255 ORTHO05D004815 6.6e-26 122.9 171 38.6
Ah.01g003110 Amaranthus hybridus HOM05D004255 ORTHO05D004815 2.5e-25 120.9 206 34.5
PGSC0003DMG400015738 Solanum tuberosum HOM05D004255 ORTHO05D004815 3.3e-25 120.6 231 34.2
FAN09G2699 Fragaria x ananassa HOM05D004255 ORTHO05D004815 4.3e-25 120.2 199 34.2
CARHR004520 Cardamine hirsuta HOM05D004255 ORTHO05D004815 7.3e-25 119.4 207 35.3
Manes.11G149500 Manihot esculenta HOM05D004255 ORTHO05D004815 9.6e-25 119.0 217 37.3
Sopen10g033540 Solanum pennellii HOM05D004255 ORTHO05D004815 2.1e-24 117.9 173 38.2
Atru.chr12.340 Acer truncatum HOM05D004255 ORTHO05D004815 2.8e-24 117.5 217 36.4
Gohir.D09G143800 Gossypium hirsutum HOM05D004255 ORTHO05D004815 8.1e-24 115.9 192 37.0
Gorai.006G165100 Gossypium raimondii HOM05D004255 ORTHO05D004815 1.1e-23 115.5 192 37.0
GSVIVG01025719001 Vitis vinifera HOM05D004255 ORTHO05D004815 1.8e-23 114.8 218 35.3
SalBow3G3143 Salvia bowleyana HOM05D004255 ORTHO05D004815 2.4e-23 114.4 269 30.9
PGR083G1347 Punica granatum HOM05D004255 ORTHO05D004815 4.0e-23 113.6 230 33.0
Haze_22852 Corylus avellana HOM05D000010 ORTHO05D000302 5.2e-23 113.2 149 39.6
SalBow2G0953 Salvia bowleyana HOM05D004255 ORTHO05D004815 5.2e-23 113.2 219 33.8
TAR633G0618 Trochodendron aralioides HOM05D004255 ORTHO05D004815 6.9e-23 112.8 168 38.7
ClCG10G020210 Citrullus lanatus HOM05D004255 ORTHO05D004815 9.0e-23 112.5 191 36.1
Cfa017586 Carpinus fangiana HOM05D004255 ORTHO05D004815 1.2e-22 112.1 198 36.4
Rhsim02G0187700 Rhododendron simsii HOM05D004255 ORTHO05D004815 1.5e-22 111.7 209 34.9
Hund05968 Selenicereus undatus HOM05D004255 ORTHO05D004815 1.5e-22 111.7 151 37.1
SalBow2G0603 Salvia bowleyana HOM05D004255 ORTHO05D004815 2.6e-22 110.9 219 33.3
Rhsim04G0144500 Rhododendron simsii HOM05D004255 ORTHO05D004815 3.4e-22 110.5 142 45.1
Rhsim07G0183700 Rhododendron simsii HOM05D004255 ORTHO05D004815 9.9e-22 109.0 206 34.0
Atru.chr12.311 Acer truncatum HOM05D004255 ORTHO05D004815 1.3e-21 108.6 191 36.6
Eucgr.K03591 Eucalyptus grandis HOM05D004255 ORTHO05D004815 2.9e-21 107.5 144 42.4
AUR62040455 Chenopodium quinoa HOM05D004255 ORTHO05D004815 6.4e-21 106.3 143 35.0
Nn2g11560 Nelumbo nucifera HOM05D004255 ORTHO05D004815 1.4e-20 105.1 159 35.8
Nitab4.5_0001297g0090 Nicotiana tabacum HOM05D004255 ORTHO05D004815 1.4e-20 105.1 188 33.5
Haze_20563 Corylus avellana HOM05D004255 ORTHO05D011583 7.1e-20 102.8 331 26.3
AUR62041993 Chenopodium quinoa HOM05D004255 ORTHO05D004815 1.2e-19 102.1 165 32.1
Migut.J00519 Erythranthe guttata HOM05D004255 ORTHO05D004815 1.2e-19 102.1 197 33.5
HanXRQChr09g0259341 Helianthus annuus HOM05D004255 ORTHO05D004815 1.6e-19 101.7 197 35.5
Potri.003G008900 Populus trichocarpa HOM05D004255 ORTHO05D004815 4.6e-19 100.1 147 38.1
RcHm_v2.0_Chr3g0470041 Rosa chinensis HOM05D004255 ORTHO05D004815 4.6e-19 100.1 179 33.5
SHI12481 Sapria himalayana HOM05D004255 ORTHO05D004815 1.0e-18 99.0 156 33.3
PGSC0003DMG401010456 Solanum tuberosum HOM05D004255 ORTHO05D004815 1.0e-18 99.0 143 37.8
Thecc.05G064100 Theobroma cacao HOM05D004255 ORTHO05D004815 2.3e-18 97.8 146 37.7
SGA_v2.0_scaffold75G24836 Striga asiatica HOM05D004255 ORTHO05D004815 3.0e-18 97.4 188 33.0
A07p18560 Brassica napus HOM05D045797 ORTHO05D033226 3.9e-18 97.1 135 46.7
FAN16G3598 Fragaria x ananassa HOM05D004255 ORTHO05D004815 3.9e-18 97.1 132 42.4
CDE02G3824 Ceratophyllum demersum HOM05D004255 ORTHO05D004815 5.1e-18 96.7 196 33.2
MBI19_g30280_MAGBIO Magnolia biondii HOM05D004255 ORTHO05D004815 5.1e-18 96.7 206 32.0
EL10Ac7g16556 Beta vulgaris HOM05D004255 ORTHO05D004815 8.7e-18 95.9 187 32.1
THA.LOC104816036 Tarenaya hassleriana HOM05D004255 ORTHO05D004815 1.5e-17 95.1 164 35.4
Glyma.20G081700 Glycine max HOM05D004255 ORTHO05D004815 5.6e-17 93.2 207 31.9
PSO063G1866 Papaver somniferum HOM05D004255 ORTHO05D004815 5.6e-17 93.2 238 27.3
CANSAT80G1593 Cannabis sativa HOM05D004255 ORTHO05D004815 9.6e-17 92.4 163 32.5
PGSC0003DMG400010458 Solanum tuberosum HOM05D004255 ORTHO05D004815 1.3e-16 92.0 110 41.8
Carub.0004s1396 Capsella rubella HOM05D004255 ORTHO05D004815 2.8e-16 90.9 175 32.6
Ca_11878_v3 Cicer arietinum L. HOM05D004255 ORTHO05D004815 2.8e-16 90.9 175 34.9
Sp4g14950 Schrenkiella parvula HOM05D004255 ORTHO05D004815 2.8e-16 90.9 172 33.7
PSO339G5596 Papaver somniferum HOM05D004255 ORTHO05D004815 4.8e-16 90.1 216 27.8
RcHm_v2.0_Chr5g0058061 Rosa chinensis HOM05D004255 ORTHO05D004815 4.8e-16 90.1 152 35.5
Gohir.D05G106066 Gossypium hirsutum HOM05D004255 ORTHO05D004815 1.4e-15 88.6 274 28.1
Thhalv10017786m.g Eutrema salsugineum HOM05D004255 ORTHO05D004815 6.9e-15 86.3 172 34.3
AT2G32630 Arabidopsis thaliana HOM05D004255 ORTHO05D004815 1.5e-14 85.1 185 30.8
ECA238G3169 Erigeron canadensis HOM05D004255 ORTHO05D004815 1.5e-14 85.1 108 45.4
TWI74G0375 Tripterygium wilfordii HOM05D004255 ORTHO05D004815 1.5e-14 85.1 161 34.2
BcaB01g03971 Brassica carinata HOM05D004255 ORTHO05D004815 2.6e-14 84.3 167 31.7
Prupe.6G234000 Prunus persica HOM05D004255 ORTHO05D004815 3.4e-14 84.0 173 35.3
CARHR126490 Cardamine hirsuta HOM05D004255 ORTHO05D004815 5.8e-14 83.2 188 30.3
BraA07t29568Z Brassica rapa HOM05D060017 ORTHO05D042446 2.9e-13 80.9 61 63.9
HPP92_026817 Vanilla planifolia HOM05D004255 ORTHO05D004815 3.8e-13 80.5 182 29.7
A07p18550 Brassica napus HOM05D060017 ORTHO05D042446 4.2e-12 77.0 61 59.0
Atru.chr8.977 Acer truncatum HOM05D004255 ORTHO05D004815 2.7e-11 74.3 90 41.1
Os07g0671200 Oryza sativa ssp. japonica HOM05D032177 ORTHO05D004815 2.7e-11 74.3 168 28.6
FAN02G2222 Fragaria x ananassa HOM05D004255 ORTHO05D004815 3.5e-11 73.9 108 38.0
BcaC01g05901 Brassica carinata HOM05D004255 ORTHO05D004815 4.6e-11 73.6 169 30.8
BraA03t11081Z Brassica rapa HOM05D004255 ORTHO05D004815 6.0e-11 73.2 169 31.4
C03p21260 Brassica napus HOM05D004255 ORTHO05D004815 7.9e-11 72.8 167 29.9
BolC3t14507H Brassica oleracea HOM05D004255 ORTHO05D004815 1.8e-10 71.6 167 29.3
A03p18210 Brassica napus HOM05D004255 ORTHO05D004815 3.9e-10 70.5 169 30.8
MD04G1094800 Malus domestica HOM05D004255 ORTHO05D004815 5.1e-10 70.1 166 29.5
AUR62029220 Chenopodium quinoa HOM05D004255 ORTHO05D004815 1.5e-09 68.6 98 35.7
Atru.chr13.2607 Acer truncatum HOM05D004255 ORTHO05D004815 1.9e-09 68.2 89 41.6
Dinv32694 Davidia involucrata HOM05D004255 ORTHO05D004815 1.3e-08 65.5 57 52.6
Lalb_Chr11g0073041 Lupinus albus HOM05D004255 ORTHO05D004815 2.8e-08 64.3 89 43.8
Solyc10g084080.3 Solanum lycopersicum HOM05D023770 ORTHO05D024770 4.8e-08 63.5 101 36.6
Lj2P116T30 Lonicera japonica HOM05D004255 ORTHO05D004815 8.1e-08 62.8 57 52.6
Actinidia05689 Actinidia chinensis HOM05D007639 ORTHO05D009509 1.8e-07 61.6 101 39.6
Sabra03G0004500 Salix brachista HOM05D004255 ORTHO05D004815 9.0e-07 59.3 150 32.0
MSTRG.1303 Avicennia marina HOM05D007639 ORTHO05D009509 2.6e-06 57.8 194 24.2
MSTRG.15969 Avicennia marina HOM05D007956 ORTHO05D010152 2.6e-06 57.8 246 25.6
Sed0023037 Sechium edule HOM05D004255 ORTHO05D004815 2.6e-06 57.8 101 34.7
HanXRQChr16g0501781 Helianthus annuus HOM05D001779 ORTHO05D001753 7.6e-06 56.2 161 24.2


User provided reference genes

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