Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G27750 Arabidopsis thaliana HOM05D004638 ORTHO05D005443 1.0e-91 340.1 182 100.0
AL4G22550 Arabidopsis lyrata HOM05D004638 ORTHO05D005443 4.7e-60 235.0 157 80.3
Carub.0004s0850 Capsella rubella HOM05D004638 ORTHO05D005443 6.6e-54 214.5 184 69.6
Carub.0006s0414 Capsella rubella HOM05D004638 ORTHO05D005443 1.1e-48 197.2 180 62.2
AT5G05210 Arabidopsis thaliana HOM05D004638 ORTHO05D005443 5.4e-48 194.9 179 62.0
Aa31LG11G6060 Aethionema arabicum HOM05D004638 ORTHO05D005443 9.2e-48 194.1 180 62.2
CARHR208030 Cardamine hirsuta HOM05D004638 ORTHO05D005443 9.2e-48 194.1 177 62.7
AL6G15050 Arabidopsis lyrata HOM05D004638 ORTHO05D005443 1.6e-47 193.4 180 61.1
A03p02250 Brassica napus HOM05D004638 ORTHO05D005443 2.0e-47 193.0 176 61.9
BraA03t09589Z Brassica rapa HOM05D004638 ORTHO05D005443 2.0e-47 193.0 176 61.9
Sp6g37620 Schrenkiella parvula HOM05D004638 ORTHO05D005443 2.0e-47 193.0 181 61.9
BolC3t12811H Brassica oleracea HOM05D004638 ORTHO05D005443 2.7e-47 192.6 176 61.9
Thhalv10013953m.g Eutrema salsugineum HOM05D004638 ORTHO05D005443 2.7e-47 192.6 180 61.1
BcaB01g05944 Brassica carinata HOM05D004638 ORTHO05D005443 3.5e-47 192.2 177 61.0
BcaC03g13151 Brassica carinata HOM05D004638 ORTHO05D005443 3.5e-47 192.2 170 62.9
BolC2t06190H Brassica oleracea HOM05D004638 ORTHO05D005443 3.5e-47 192.2 170 62.9
C03p02590 Brassica napus HOM05D004638 ORTHO05D005443 7.8e-47 191.0 176 61.4
BraA02t04837Z Brassica rapa HOM05D004638 ORTHO05D005443 3.0e-46 189.1 171 61.4
BcaB01g05717 Brassica carinata HOM05D004638 ORTHO05D005443 3.9e-46 188.7 179 62.0
THA.LOC104800549 Tarenaya hassleriana HOM05D004638 ORTHO05D005443 5.0e-46 188.3 189 58.7
C02p02210 Brassica napus HOM05D004638 ORTHO05D005443 2.5e-45 186.0 170 61.2
BcaB05g21727 Brassica carinata HOM05D004638 ORTHO05D005443 4.3e-45 185.3 176 60.2
Gohir.A09G230500 Gossypium hirsutum HOM05D004638 ORTHO05D005443 1.4e-40 170.2 163 58.3
Duzib212G0972 Durio zibethinus HOM05D004638 ORTHO05D005443 9.2e-40 167.5 170 55.3
Gohir.D09G231600 Gossypium hirsutum HOM05D004638 ORTHO05D005443 1.2e-39 167.2 163 57.7
Gorai.006G254300 Gossypium raimondii HOM05D004638 ORTHO05D005443 1.2e-39 167.2 163 57.7
Duzib052G1194 Durio zibethinus HOM05D004638 ORTHO05D005443 2.7e-39 166.0 178 53.9
Thecc.04G268000 Theobroma cacao HOM05D004638 ORTHO05D005443 2.3e-38 162.9 181 53.0
Lj2C17T3 Lonicera japonica HOM05D004638 ORTHO05D005443 5.1e-38 161.8 144 60.4
COL.COLO4_15993 Corchorus olitorius HOM05D004638 ORTHO05D005443 1.9e-37 159.8 144 58.3
PGR142G1578 Punica granatum HOM05D004638 ORTHO05D005443 1.6e-36 156.8 182 51.1
CDE07G1349 Ceratophyllum demersum HOM05D002308 ORTHO05D005297 1.8e-35 153.3 180 49.4
ClCG06G018050 Citrullus lanatus HOM05D004638 ORTHO05D005443 6.8e-35 151.4 190 48.9
TAR623G0129 Trochodendron aralioides HOM05D004638 ORTHO05D005443 8.9e-35 151.0 180 50.6
Cfa014805 Carpinus fangiana HOM05D004638 ORTHO05D005443 1.5e-34 150.2 170 51.8
QL06p021792 Quercus lobata HOM05D004638 ORTHO05D005443 2.0e-34 149.8 185 47.6
MELO3C026193.2 Cucumis melo HOM05D004638 ORTHO05D005443 1.3e-33 147.1 181 47.5
CsaV3_1G000420 Cucumis sativus L. HOM05D004638 ORTHO05D005443 3.8e-33 145.6 190 46.8
MD16G1229100 Malus domestica HOM05D004638 ORTHO05D005443 8.4e-33 144.4 143 54.5
CiPaw.01G176300 Carya illinoinensis HOM05D004638 ORTHO05D005443 1.4e-32 143.7 190 46.8
TWI53G1292 Tripterygium wilfordii HOM05D004638 ORTHO05D005443 1.9e-32 143.3 185 47.6
Manes.15G046900 Manihot esculenta HOM05D004638 ORTHO05D005443 3.2e-32 142.5 143 56.6
Ciclev10025979m.g Citrus clementina HOM05D004638 ORTHO05D005443 4.1e-32 142.1 150 52.7
Glyma.19G074500 Glycine max HOM05D004638 ORTHO05D005443 4.1e-32 142.1 158 53.8
Atru.chr2.74 Acer truncatum HOM05D004638 ORTHO05D005443 5.4e-32 141.7 143 54.5
Cpa.g.c29962.1 Carica papaya HOM05D004638 ORTHO05D005443 2.7e-31 139.4 181 49.2
DCAR_007662 Daucus carota HOM05D004638 ORTHO05D005443 3.5e-31 139.0 144 54.9
Haze_15400 Corylus avellana HOM05D004638 ORTHO05D005443 6.0e-31 138.3 181 48.1
Haze_15402 Corylus avellana HOM05D004638 ORTHO05D005443 6.0e-31 138.3 181 48.1
Prupe.1G051000 Prunus persica HOM05D004638 ORTHO05D005443 6.0e-31 138.3 157 49.7
Atru.chr4.1922 Acer truncatum HOM05D004638 ORTHO05D005443 1.0e-30 137.5 180 46.7
FAN22G0870 Fragaria x ananassa HOM05D004638 ORTHO05D005443 1.3e-30 137.1 150 53.3
Dinv31214 Davidia involucrata HOM05D001005 ORTHO05D000836 1.7e-30 136.7 173 48.0
FvH4_2g18960 Fragaria vesca HOM05D004638 ORTHO05D005443 1.7e-30 136.7 185 46.5
CSS0022021 Camellia sinensis var. sinensis HOM05D004638 ORTHO05D005443 3.9e-30 135.6 143 52.4
FAN24G1523 Fragaria x ananassa HOM05D004638 ORTHO05D005443 3.9e-30 135.6 185 45.9
TWI73G0168 Tripterygium wilfordii HOM05D004638 ORTHO05D005443 5.1e-30 135.2 144 52.1
GSVIVG01027946001 Vitis vinifera HOM05D004638 ORTHO05D005443 5.1e-30 135.2 199 45.2
TPR.G7963 Trifolium pratense HOM05D004638 ORTHO05D005443 1.1e-29 134.0 180 46.1
ClCG06G007330 Citrullus lanatus HOM05D004638 ORTHO05D005443 2.5e-29 132.9 162 47.5
FAN17G1367 Fragaria x ananassa HOM05D004638 ORTHO05D005443 2.5e-29 132.9 185 45.4
Hma1.2p1_0751F.1_g212710 Hydrangea macrophylla HOM05D004638 ORTHO05D005443 2.5e-29 132.9 165 49.7
HPP92_027401 Vanilla planifolia HOM05D004638 ORTHO05D005443 7.3e-29 131.3 167 46.7
Rhsim09G0102800 Rhododendron simsii HOM05D003876 ORTHO05D005443 9.6e-29 131.0 143 54.5
Peaxi162Scf00048g00171 Petunia axillaris HOM05D004638 ORTHO05D005443 1.6e-28 130.2 162 48.8
Ah.16g102130 Amaranthus hybridus HOM05D004638 ORTHO05D005443 3.6e-28 129.0 144 48.6
Aqoxy5G00949 Aquilegia oxysepala HOM05D004638 ORTHO05D005443 3.6e-28 129.0 178 45.5
CsaV3_2G012340 Cucumis sativus L. HOM05D004638 ORTHO05D005443 3.6e-28 129.0 143 51.0
MELO3C023050.2 Cucumis melo HOM05D004638 ORTHO05D005443 6.2e-28 128.3 172 45.3
RcHm_v2.0_Chr4g0395981 Rosa chinensis HOM05D004638 ORTHO05D005443 6.2e-28 128.3 143 51.7
EL10Ac2g04652 Beta vulgaris HOM05D004638 ORTHO05D005443 1.1e-27 127.5 153 48.4
Medtr5g012820 Medicago truncatula HOM05D004638 ORTHO05D005443 1.4e-27 127.1 174 46.6
FAN15G0747 Fragaria x ananassa HOM05D004638 ORTHO05D005443 2.4e-27 126.3 185 43.8
CDE06G2325 Ceratophyllum demersum HOM05D004638 ORTHO05D005443 3.1e-27 125.9 154 48.1
Phvul.003G100800 Phaseolus vulgaris HOM05D004638 ORTHO05D005443 4.0e-27 125.6 178 44.4
FvH4_4g05060 Fragaria vesca HOM05D004638 ORTHO05D005443 5.2e-27 125.2 185 43.2
FAN12G0885 Fragaria x ananassa HOM05D004638 ORTHO05D005443 5.2e-27 125.2 185 43.2
Sed0011634 Sechium edule HOM05D004638 ORTHO05D005443 5.2e-27 125.2 174 42.5
SGA_v2.0_scaffold21G09643 Striga asiatica HOM05D004638 ORTHO05D005443 5.2e-27 125.2 168 44.0
Atru.chr4.1888 Acer truncatum HOM05D004638 ORTHO05D005443 8.9e-27 124.4 128 53.1
Actinidia22435 Actinidia chinensis HOM05D004638 ORTHO05D005443 1.2e-26 124.0 122 55.7
TPR.G18128 Trifolium pratense HOM05D004638 ORTHO05D005443 1.2e-26 124.0 173 44.5
Lalb_Chr08g0244981 Lupinus albus HOM05D004638 ORTHO05D005443 2.0e-26 123.2 171 47.4
Lalb_Chr11g0063191 Lupinus albus HOM05D004638 ORTHO05D005443 2.0e-26 123.2 179 45.8
Eucgr.H01383 Eucalyptus grandis HOM05D004638 ORTHO05D005443 5.8e-26 121.7 143 50.3
Potri.010G064100 Populus trichocarpa HOM05D004638 ORTHO05D005443 7.6e-26 121.3 174 42.5
CiPaw.02G105500 Carya illinoinensis HOM05D004638 ORTHO05D005443 9.9e-26 120.9 98 64.3
Ca_03509_v3 Cicer arietinum L. HOM05D004638 ORTHO05D005443 1.3e-25 120.6 194 44.3
ATR0051G063 Amborella trichopoda HOM05D004638 ORTHO05D005443 3.8e-25 119.0 139 48.9
Haze_11486 Corylus avellana HOM05D004638 ORTHO05D005443 4.9e-25 118.6 170 44.7
Psat2g177000 Pisum sativum HOM05D004638 ORTHO05D005443 1.1e-24 117.5 173 43.9
PGSC0003DMG400013656 Solanum tuberosum HOM05D004638 ORTHO05D005443 1.1e-24 117.5 140 46.4
Oeu017919.1 Olea europaea HOM05D004638 ORTHO05D005443 1.4e-24 117.1 161 42.9
SalBow5G3921 Salvia bowleyana HOM05D004638 ORTHO05D005443 2.4e-24 116.3 171 41.5
Migut.L01893 Erythranthe guttata HOM05D004638 ORTHO05D005443 4.2e-24 115.5 186 39.8
VMungo1215G0894 Vigna mungo HOM05D004638 ORTHO05D005443 5.4e-24 115.2 173 42.2
Lsat_1_v5_gn_9_30280 Lactuca sativa HOM05D004638 ORTHO05D005443 4.6e-23 112.1 139 46.8
Glyma.05G075900 Glycine max HOM05D004638 ORTHO05D005443 1.3e-22 110.5 163 44.2
Nitab4.5_0000614g0010 Nicotiana tabacum HOM05D004638 ORTHO05D005443 1.7e-22 110.2 147 43.5
SGA_v2.0_scaffold41G15829 Striga asiatica HOM05D004638 ORTHO05D005443 3.0e-22 109.4 144 45.1
Nitab4.5_0001815g0110 Nicotiana tabacum HOM05D004638 ORTHO05D005443 3.9e-22 109.0 170 40.6
ECA246G4403 Erigeron canadensis HOM05D004638 ORTHO05D005443 1.1e-21 107.5 128 48.4
HanXRQChr11g0320631 Helianthus annuus HOM05D004638 ORTHO05D005443 1.1e-21 107.5 139 45.3
Solyc02g082130.2 Solanum lycopersicum HOM05D004638 ORTHO05D005443 2.5e-21 106.3 181 37.6
Sopen02g026790 Solanum pennellii HOM05D004638 ORTHO05D005443 2.5e-21 106.3 181 37.6
Cc04_g09510 Coffea canephora HOM05D004638 ORTHO05D005443 4.3e-21 105.5 165 44.8
arahy.Tifrunner.gnm1.ann1.L9DXTM Arachis hypogaea HOM05D004638 ORTHO05D005443 9.6e-21 104.4 143 44.8
MSTRG.13923 Avicennia marina HOM05D004638 ORTHO05D005443 1.1e-19 100.9 154 40.3
MSTRG.26536 Avicennia marina HOM05D004638 ORTHO05D005443 1.1e-19 100.9 154 40.3
CANSAT01G0932 Cannabis sativa HOM05D004638 ORTHO05D005443 1.4e-19 100.5 172 38.4
CANSAT01G3035 Cannabis sativa HOM05D004638 ORTHO05D005443 1.4e-19 100.5 172 38.4
Mapoly0122s0042 Marchantia polymorpha HOM05D004638 ORTHO05D005443 2.4e-19 99.8 179 38.0
HanXRQChr14g0438771 Helianthus annuus HOM05D004638 ORTHO05D005443 5.3e-19 98.6 139 43.2
Zm00001eb248040 Zea mays HOM05D004638 ORTHO05D005443 5.3e-19 98.6 167 42.5
Sabra10G0042900 Salix brachista HOM05D004638 ORTHO05D005443 6.9e-19 98.2 144 41.0
MD13G1224300 Malus domestica HOM05D004638 ORTHO05D005443 9.0e-19 97.8 142 42.3
arahy.Tifrunner.gnm1.ann1.XHZZ6B Arachis hypogaea HOM05D004638 ORTHO05D005443 2.6e-18 96.3 126 47.6
Lj3g0004611 Lotus japonicus HOM05D004638 ORTHO05D005443 9.9e-18 94.4 102 52.0
CAN.G809.17 Capsicum annuum HOM05D004638 ORTHO05D005443 1.7e-17 93.6 142 37.3
Medtr2g079000 Medicago truncatula HOM05D004638 ORTHO05D005443 2.2e-17 93.2 154 40.9
Sc06g0001700 Simmondsia chinensis HOM05D004638 ORTHO05D005443 4.9e-17 92.0 145 38.6
AagrBONN_evm.TU.Sc2ySwM_368.887 Anthoceros agrestis HOM05D004638 ORTHO05D005443 6.4e-17 91.7 129 41.9
unitig_22.g5967 Utricularia gibba HOM05D004638 ORTHO05D005443 1.1e-16 90.9 99 49.5
AUR62014564 Chenopodium quinoa HOM05D004638 ORTHO05D005443 7.1e-16 88.2 173 34.1
Potri.008G173300 Populus trichocarpa HOM05D004638 ORTHO05D005443 2.1e-15 86.7 182 36.3
Lj4g0009002 Lotus japonicus HOM05D004638 ORTHO05D005443 3.9e-14 82.4 172 37.2
AUR62039396 Chenopodium quinoa HOM05D004638 ORTHO05D005443 8.7e-14 81.3 98 44.9
SMO119G0466 Selaginella moellendorffii HOM05D004638 ORTHO05D005443 2.1e-12 76.6 164 36.6
COL.COLO4_32263 Corchorus olitorius HOM05D004638 ORTHO05D005443 4.0e-11 72.4 144 37.5
SEGI_31736 Sequoiadendron giganteum HOM05D004638 ORTHO05D005443 5.3e-11 72.0 144 34.7
CARHR120450 Cardamine hirsuta HOM05D004638 ORTHO05D005443 6.9e-11 71.6 107 48.6
Oeu016931.1 Olea europaea HOM05D004638 ORTHO05D005443 1.2e-10 70.9 180 31.7
Actinidia16422 Actinidia chinensis HOM05D004638 ORTHO05D005443 4.5e-10 68.9 98 43.9
CBR_g30748 Chara braunii HOM05D003542 ORTHO05D004799 5.8e-10 68.6 149 33.6
Pp3c8_4010 Physcomitrium patens HOM05D004638 ORTHO05D005443 5.8e-10 68.6 119 42.0
Lj3g0021975 Lotus japonicus HOM05D004638 ORTHO05D005443 1.7e-09 67.0 150 38.7
Nitab4.5_0000047g0220 Nicotiana tabacum HOM05D004638 ORTHO05D005443 8.4e-09 64.7 87 41.4
MCO04G484 Micromonas commoda HOM05D004638 ORTHO05D005443 1.0e-06 57.8 123 34.1
Nitab4.5_0000047g0240 Nicotiana tabacum HOM05D004638 ORTHO05D005443 1.8e-06 57.0 83 39.8
Os05g0372200 Oryza sativa ssp. japonica HOM05D004638 ORTHO05D005443 3.9e-06 55.8 140 32.9


User provided reference genes

Program Settings