Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G27730 Arabidopsis thaliana HOM05D004934 ORTHO05D005924 1.1e-51 206.5 114 100.0
AL4G22570 Arabidopsis lyrata HOM05D004934 ORTHO05D005924 2.6e-48 195.3 114 92.1
Carub.0004s0847 Capsella rubella HOM05D004934 ORTHO05D005924 1.1e-43 179.9 114 86.0
Sp4g10520 Schrenkiella parvula HOM05D004934 ORTHO05D005924 2.8e-42 175.3 117 82.9
A07p18350 Brassica napus HOM05D004934 ORTHO05D005924 1.7e-39 166.0 115 80.0
CARHR120400 Cardamine hirsuta HOM05D004934 ORTHO05D005924 6.4e-39 164.1 115 81.7
BcaB06g28164 Brassica carinata HOM05D004934 ORTHO05D005924 1.1e-38 163.3 116 75.9
BcaC02g08235 Brassica carinata HOM05D004934 ORTHO05D005924 3.2e-38 161.8 116 78.4
C04p56900 Brassica napus HOM05D004934 ORTHO05D005924 3.2e-38 161.8 116 78.4
BolC4t27225H Brassica oleracea HOM05D004934 ORTHO05D005924 3.2e-38 161.8 116 78.4
Thhalv10017451m.g Eutrema salsugineum HOM05D004934 ORTHO05D005924 9.2e-38 160.2 114 75.4
BraA07t29551Z Brassica rapa HOM05D004934 ORTHO05D005924 1.2e-37 159.8 115 76.5
A04p21090 Brassica napus HOM05D004934 ORTHO05D005924 4.6e-37 157.9 113 76.1
BraA04t17678Z Brassica rapa HOM05D004934 ORTHO05D005924 4.6e-37 157.9 113 76.1
BcaC02g10898 Brassica carinata HOM05D004934 ORTHO05D005924 6.0e-37 157.5 116 76.7
C04p23930 Brassica napus HOM05D004934 ORTHO05D005924 6.0e-37 157.5 116 76.7
BolC4t23886H Brassica oleracea HOM05D004934 ORTHO05D005924 6.0e-37 157.5 116 76.7
BcaB02g10110 Brassica carinata HOM05D004934 ORTHO05D005924 1.9e-35 152.5 117 73.5
THA.LOC104800543 Tarenaya hassleriana HOM05D004934 ORTHO05D005924 4.0e-33 144.8 121 70.2
Aa31LG5G8260 Aethionema arabicum HOM05D004934 ORTHO05D005924 3.8e-31 138.3 117 67.5
BcaC02g10901 Brassica carinata HOM05D004934 ORTHO05D005924 3.9e-28 128.3 104 71.2
Solyc11g068510.2 Solanum lycopersicum HOM05D004934 ORTHO05D005924 6.2e-26 120.9 117 63.2
Sopen11g027220 Solanum pennellii HOM05D004934 ORTHO05D005924 6.2e-26 120.9 117 63.2
Manes.04G003100 Manihot esculenta HOM05D004934 ORTHO05D005924 8.1e-26 120.6 121 60.3
Sed0020870 Sechium edule HOM05D004934 ORTHO05D005924 8.1e-26 120.6 112 63.4
Nn2g14177 Nelumbo nucifera HOM05D004934 ORTHO05D005924 1.8e-25 119.4 115 60.0
Nitab4.5_0002914g0100 Nicotiana tabacum HOM05D004934 ORTHO05D005924 1.8e-25 119.4 117 65.0
Cc01_g09040 Coffea canephora HOM05D004934 ORTHO05D005924 2.4e-25 119.0 117 63.2
PGSC0003DMG400026356 Solanum tuberosum HOM05D004934 ORTHO05D005924 2.4e-25 119.0 115 60.0
Prupe.6G131900 Prunus persica HOM05D004934 ORTHO05D005924 6.9e-25 117.5 121 63.6
TWI31G0143 Tripterygium wilfordii HOM05D004934 ORTHO05D005924 6.9e-25 117.5 120 58.3
Cfa010007 Carpinus fangiana HOM05D004934 ORTHO05D005924 8.9e-25 117.1 121 61.2
AUR62036196 Chenopodium quinoa HOM05D004934 ORTHO05D005924 1.2e-24 116.7 118 61.0
Peaxi162Scf00040g00023 Petunia axillaris HOM05D004934 ORTHO05D005924 2.6e-24 115.5 116 60.3
CAN.G1524.5 Capsicum annuum HOM05D004934 ORTHO05D005924 4.4e-24 114.8 118 60.2
Nitab4.5_0000227g0280 Nicotiana tabacum HOM05D004934 ORTHO05D005924 4.4e-24 114.8 117 64.1
Nitab4.5_0000755g0070 Nicotiana tabacum HOM05D004934 ORTHO05D005924 4.4e-24 114.8 118 62.7
Potri.009G163100 Populus trichocarpa HOM05D004934 ORTHO05D005924 4.4e-24 114.8 117 60.7
Migut.N02487 Erythranthe guttata HOM05D004934 ORTHO05D005924 5.8e-24 114.4 115 59.1
PGR102G3359 Punica granatum HOM05D004934 ORTHO05D005924 5.8e-24 114.4 117 62.4
AUR62009749 Chenopodium quinoa HOM05D004934 ORTHO05D005924 7.6e-24 114.0 118 59.3
Eucgr.B03844 Eucalyptus grandis HOM05D004934 ORTHO05D005924 1.3e-23 113.2 117 59.0
CiPaw.14G099500 Carya illinoinensis HOM05D004934 ORTHO05D005924 2.2e-23 112.5 121 59.5
ClCG01G011970 Citrullus lanatus HOM05D004934 ORTHO05D005924 3.8e-23 111.7 111 60.4
Thecc.09G281300 Theobroma cacao HOM05D004934 ORTHO05D005924 3.8e-23 111.7 121 57.0
Dinv22836 Davidia involucrata HOM05D004934 ORTHO05D005924 4.9e-23 111.3 115 58.3
Nitab4.5_0012586g0010 Nicotiana tabacum HOM05D004934 ORTHO05D005924 4.9e-23 111.3 118 62.7
Sabra09G0127300 Salix brachista HOM05D004934 ORTHO05D005924 4.9e-23 111.3 113 61.1
Hund18761 Selenicereus undatus HOM05D004934 ORTHO05D005924 4.9e-23 111.3 118 60.2
EL10Ac7g15830 Beta vulgaris HOM05D004934 ORTHO05D005924 6.4e-23 110.9 117 59.0
CsaV3_1G014900 Cucumis sativus L. HOM05D004934 ORTHO05D005924 8.4e-23 110.5 116 58.6
Sc06g0008770 Simmondsia chinensis HOM05D004934 ORTHO05D005924 8.4e-23 110.5 122 59.8
Ca_19413_v3 Cicer arietinum L. HOM05D004934 ORTHO05D005924 1.1e-22 110.2 120 60.0
Dinv42546 Davidia involucrata HOM05D004934 ORTHO05D005924 1.1e-22 110.2 120 57.5
Lj3g0027260 Lotus japonicus HOM05D004934 ORTHO05D005924 1.9e-22 109.4 118 56.8
Atru.chr3.3218 Acer truncatum HOM05D004934 ORTHO05D005924 2.4e-22 109.0 116 61.2
MD11G1166100 Malus domestica HOM05D004934 ORTHO05D005924 5.4e-22 107.8 116 61.2
Aqoxy4G02760 Aquilegia oxysepala HOM05D004934 ORTHO05D005924 7.1e-22 107.5 116 57.8
Ciclev10029605m.g Citrus clementina HOM05D004934 ORTHO05D005924 7.1e-22 107.5 116 57.8
TAR633G0561 Trochodendron aralioides HOM05D004934 ORTHO05D005924 7.1e-22 107.5 115 55.7
Zm00001eb369670 Zea mays HOM05D004934 ORTHO05D005924 7.1e-22 107.5 123 59.3
Lalb_Chr03g0028151 Lupinus albus HOM05D004934 ORTHO05D005924 9.3e-22 107.1 121 58.7
MSTRG.17705 Avicennia marina HOM05D004934 ORTHO05D005924 1.2e-21 106.7 118 57.6
ATR0609G030 Amborella trichopoda HOM05D004934 ORTHO05D005924 1.6e-21 106.3 121 56.2
Potri.004G201700 Populus trichocarpa HOM05D004934 ORTHO05D005924 1.6e-21 106.3 121 54.5
GSVIVG01036114001 Vitis vinifera HOM05D004934 ORTHO05D005924 1.6e-21 106.3 115 58.3
Duzib168G1921 Durio zibethinus HOM05D004934 ORTHO05D005924 2.7e-21 105.5 121 56.2
Medtr4g052910 Medicago truncatula HOM05D004934 ORTHO05D005924 2.7e-21 105.5 120 56.7
QL01p012137 Quercus lobata HOM05D004934 ORTHO05D005924 3.5e-21 105.1 120 56.7
FvH4_5g26820 Fragaria vesca HOM05D004934 ORTHO05D005924 4.6e-21 104.8 121 58.7
FAN04G2654 Fragaria x ananassa HOM05D004934 ORTHO05D005924 4.6e-21 104.8 121 58.7
Sabra04G0136300 Salix brachista HOM05D004934 ORTHO05D005924 4.6e-21 104.8 125 54.4
Gohir.A08G005600 Gossypium hirsutum HOM05D004934 ORTHO05D005924 6.0e-21 104.4 121 56.2
Oeu031471.1 Olea europaea HOM05D004934 ORTHO05D005924 6.0e-21 104.4 118 53.4
Gohir.D08G015900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 7.8e-21 104.0 121 53.7
Phvul.011G095100 Phaseolus vulgaris HOM05D004934 ORTHO05D005924 7.8e-21 104.0 117 53.8
Gohir.A09G096200 Gossypium hirsutum HOM05D004934 ORTHO05D005924 1.3e-20 103.2 112 55.4
Gorai.004G010200 Gossypium raimondii HOM05D004934 ORTHO05D005924 1.3e-20 103.2 121 52.9
VMungo1127G1656 Vigna mungo HOM05D004934 ORTHO05D005924 1.3e-20 103.2 120 56.7
Zm00001eb151060 Zea mays HOM05D004934 ORTHO05D005924 1.3e-20 103.2 123 57.7
MSTRG.12371 Avicennia marina HOM05D004934 ORTHO05D005924 1.7e-20 102.8 118 56.8
FAN13G2036 Fragaria x ananassa HOM05D004934 ORTHO05D005924 1.7e-20 102.8 121 57.9
CANSAT54G1198 Cannabis sativa HOM05D004934 ORTHO05D005924 2.3e-20 102.4 131 57.3
Glyma.12G090500 Glycine max HOM05D004934 ORTHO05D005924 3.0e-20 102.1 117 53.0
Gohir.D09G095900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 3.0e-20 102.1 112 54.5
Hma1.2p1_0587F.1_g184270 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 3.9e-20 101.7 116 56.0
TPR.G17236 Trifolium pratense HOM05D004934 ORTHO05D005924 3.9e-20 101.7 121 54.5
Glyma.11G182300 Glycine max HOM05D004934 ORTHO05D005924 5.1e-20 101.3 117 53.0
Lalb_Chr01g0004881 Lupinus albus HOM05D004934 ORTHO05D005924 5.1e-20 101.3 121 58.7
PSO339G6001 Papaver somniferum HOM05D004934 ORTHO05D005924 5.1e-20 101.3 116 59.5
PSO801G0293 Papaver somniferum HOM05D004934 ORTHO05D005924 6.6e-20 100.9 116 58.6
RcHm_v2.0_Chr5g0045641 Rosa chinensis HOM05D004934 ORTHO05D005924 6.6e-20 100.9 115 53.9
arahy.Tifrunner.gnm1.ann1.Q13MWU Arachis hypogaea HOM05D004934 ORTHO05D005924 1.1e-19 100.1 124 55.6
arahy.Tifrunner.gnm1.ann1.Q2H7V9 Arachis hypogaea HOM05D004934 ORTHO05D005924 1.1e-19 100.1 124 55.6
MD03G1147400 Malus domestica HOM05D004934 ORTHO05D005924 1.1e-19 100.1 113 58.4
Peaxi162Scf00757g00422 Petunia axillaris HOM05D004934 ORTHO05D005924 1.5e-19 99.8 117 55.6
unitig_27.g25034 Utricularia gibba HOM05D004934 ORTHO05D005924 1.5e-19 99.8 112 53.6
Actinidia35468 Actinidia chinensis HOM05D004934 ORTHO05D005924 4.3e-19 98.2 117 56.4
Lsat_1_v5_gn_2_59421 Lactuca sativa HOM05D004934 ORTHO05D005924 7.3e-19 97.4 117 51.3
Lsat_1_v5_gn_6_38900 Lactuca sativa HOM05D004934 ORTHO05D005924 1.3e-18 96.7 116 52.6
CDE12G0371 Ceratophyllum demersum HOM05D004622 ORTHO05D005431 2.1e-18 95.9 112 53.6
vmacro14353 Vaccinium macrocarpon HOM05D004934 ORTHO05D005924 4.8e-18 94.7 121 51.2
CSS0038235 Camellia sinensis var. sinensis HOM05D004934 ORTHO05D005924 6.2e-18 94.4 107 57.9
TAR636G0935 Trochodendron aralioides HOM05D004934 ORTHO05D005924 8.1e-18 94.0 113 53.1
Duzib170G0221 Durio zibethinus HOM05D004934 ORTHO05D005924 2.4e-17 92.4 114 52.6
HanXRQChr11g0324151 Helianthus annuus HOM05D004934 ORTHO05D005924 2.4e-17 92.4 125 48.0
ECA233G4139 Erigeron canadensis HOM05D004934 ORTHO05D005924 4.0e-17 91.7 121 49.6
Psat7g187720 Pisum sativum HOM05D004934 ORTHO05D005924 5.3e-17 91.3 121 53.7
RcHm_v2.0_Chr5g0046361 Rosa chinensis HOM05D004934 ORTHO05D005924 3.4e-16 88.6 123 48.8
CDE04G1608 Ceratophyllum demersum HOM05D004934 ORTHO05D005924 4.5e-16 88.2 122 46.7
HanXRQChr13g0397481 Helianthus annuus HOM05D004934 ORTHO05D005924 1.3e-15 86.7 113 54.0
Aqoxy2G01124 Aquilegia oxysepala HOM05D004934 ORTHO05D005924 1.4e-14 83.2 103 52.4
Oeu035567.1 Olea europaea HOM05D004934 ORTHO05D005924 1.4e-14 83.2 118 47.5
SGA_v2.0_scaffold295G47520 Striga asiatica HOM05D004934 ORTHO05D005924 1.6e-13 79.7 111 48.6
Os08g0559000 Oryza sativa ssp. japonica HOM05D004934 ORTHO05D005924 6.0e-13 77.8 114 48.2
FAN11G2484 Fragaria x ananassa HOM05D004934 ORTHO05D005924 1.0e-12 77.0 115 50.4
FvH4_3g25100 Fragaria vesca HOM05D004934 ORTHO05D005924 1.8e-12 76.3 115 50.4
SalBow3G2207 Salvia bowleyana HOM05D004934 ORTHO05D005924 2.3e-12 75.9 121 46.3
Rhsim13G0112500 Rhododendron simsii HOM05D004934 ORTHO05D005924 8.7e-12 73.9 157 40.1
PSO384G4162 Papaver somniferum HOM05D004934 ORTHO05D005924 1.9e-11 72.8 106 48.1
Zm00001eb343400 Zea mays HOM05D004934 ORTHO05D005924 7.4e-11 70.9 89 48.3
Pp3c1_22500 Physcomitrium patens HOM05D004934 ORTHO05D005924 1.3e-10 70.1 109 44.0
SGA_v2.0_scaffold177G39414 Striga asiatica HOM05D004934 ORTHO05D005924 1.3e-10 70.1 116 44.8
PSO339G2388 Papaver somniferum HOM05D004934 ORTHO05D005924 1.6e-10 69.7 106 48.1
Zm00001eb416000 Zea mays HOM05D004934 ORTHO05D005924 1.6e-10 69.7 90 54.4
ECA238G4733 Erigeron canadensis HOM05D004934 ORTHO05D005924 2.1e-10 69.3 120 42.5
DCAR_010342 Daucus carota HOM05D004934 ORTHO05D005924 2.4e-09 65.9 92 46.7
Os09g0568900 Oryza sativa ssp. japonica HOM05D004934 ORTHO05D005924 3.1e-09 65.5 85 50.6
Nn6g34871 Nelumbo nucifera HOM05D004934 ORTHO05D005924 6.9e-09 64.3 47 74.5
MBI05_g05303_MAGBIO Magnolia biondii HOM05D004934 ORTHO05D005924 1.5e-08 63.2 127 40.2
DCAR_030570 Daucus carota HOM05D004934 ORTHO05D005924 2.0e-08 62.8 66 63.6
HPP92_003219 Vanilla planifolia HOM05D004934 ORTHO05D005924 9.9e-08 60.5 83 47.0
Cpa.g.sc32.36 Carica papaya HOM05D004934 ORTHO05D005924 1.3e-07 60.1 67 49.3
FAN25G2937 Fragaria x ananassa HOM05D004934 ORTHO05D005924 1.3e-07 60.1 81 44.4
AagrBONN_evm.TU.Sc2ySwM_228.2259 Anthoceros agrestis HOM05D004934 ORTHO05D005924 3.8e-07 58.5 109 43.1
SEGI_07969 Sequoiadendron giganteum HOM05D004934 ORTHO05D005924 9.3e-06 53.9 47 61.7


User provided reference genes

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