Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G27340 Arabidopsis thaliana HOM05D004561 ORTHO05D005315 1.2e-149 533.1 259 100.0
AT3G58130 Arabidopsis thaliana HOM05D004561 ORTHO05D005315 3.1e-126 455.3 255 88.6
AL5G39820 Arabidopsis lyrata HOM05D004561 ORTHO05D005315 1.6e-122 443.0 255 87.1
CARHR168490 Cardamine hirsuta HOM05D004561 ORTHO05D005315 5.8e-120 434.5 256 84.4
Carub.0005s2498 Capsella rubella HOM05D004561 ORTHO05D005315 1.3e-116 423.3 256 80.9
Sp5g04590 Schrenkiella parvula HOM05D004561 ORTHO05D005315 5.0e-116 421.4 256 81.6
BraA07t30043Z Brassica rapa HOM05D004561 ORTHO05D005315 2.8e-114 415.6 259 78.4
Thhalv10002077m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 4.7e-114 414.8 259 80.3
A07p23920 Brassica napus HOM05D004561 ORTHO05D005315 1.8e-113 412.9 251 79.7
Thhalv10002036m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 1.2e-112 410.2 255 81.6
BolC6t37673H Brassica oleracea HOM05D004561 ORTHO05D005315 9.8e-112 407.1 251 78.9
C06p25150 Brassica napus HOM05D004561 ORTHO05D005315 3.2e-110 402.1 294 69.4
BcaB02g07548 Brassica carinata HOM05D004561 ORTHO05D005315 4.6e-109 398.3 278 70.9
BcaC08g44900 Brassica carinata HOM05D004561 ORTHO05D005315 9.5e-107 390.6 214 83.6
C08p33660 Brassica napus HOM05D004561 ORTHO05D005315 1.3e-100 370.2 244 75.0
THA.LOC104822320 Tarenaya hassleriana HOM05D004561 ORTHO05D005315 5.6e-99 364.8 255 72.2
BcaC07g40276 Brassica carinata HOM05D004561 ORTHO05D005315 3.2e-94 349.0 219 76.3
COL.COLO4_13996 Corchorus olitorius HOM05D004561 ORTHO05D005315 1.5e-88 330.1 248 64.5
Dinv14864 Davidia involucrata HOM05D004561 ORTHO05D005315 2.6e-88 329.3 248 64.5
Thecc.01G124300 Theobroma cacao HOM05D004561 ORTHO05D005315 4.4e-88 328.6 254 63.4
CSS0045511 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 5.8e-88 328.2 259 62.5
Aa31LG10G12840 Aethionema arabicum HOM05D004561 ORTHO05D005315 9.9e-88 327.4 298 60.4
Ciclev10002226m.g Citrus clementina HOM05D004561 ORTHO05D005315 3.8e-87 325.5 245 65.3
CiPaw.15G149700 Carya illinoinensis HOM05D004561 ORTHO05D005315 8.4e-87 324.3 254 61.0
QL09p040874 Quercus lobata HOM05D004561 ORTHO05D005315 1.4e-86 323.6 254 62.6
Solyc08g074360.3 Solanum lycopersicum HOM05D004561 ORTHO05D005315 1.9e-86 323.2 254 61.4
Atru.chr13.142 Acer truncatum HOM05D004561 ORTHO05D005315 4.2e-86 322.0 252 62.3
GSVIVG01028605001 Vitis vinifera HOM05D004561 ORTHO05D005315 5.4e-86 321.6 248 63.7
Gohir.A05G386400 Gossypium hirsutum HOM05D004561 ORTHO05D005315 7.1e-86 321.2 258 62.4
Sabra12G0028700 Salix brachista HOM05D004561 ORTHO05D005315 7.1e-86 321.2 253 61.3
PGSC0003DMG400009224 Solanum tuberosum HOM05D004561 ORTHO05D005315 9.3e-86 320.9 255 60.8
Potri.012G041700 Populus trichocarpa HOM05D004561 ORTHO05D005315 1.2e-85 320.5 250 62.0
Hma1.2p1_0018F.1_g012650 Hydrangea macrophylla HOM05D004561 ORTHO05D005315 1.6e-85 320.1 254 61.0
Sopen08g023020 Solanum pennellii HOM05D004561 ORTHO05D005315 2.1e-85 319.7 254 61.4
Solyc11g017400.2 Solanum lycopersicum HOM05D004561 ORTHO05D005315 2.7e-85 319.3 255 61.2
CAN.G370.25 Capsicum annuum HOM05D004561 ORTHO05D005315 4.6e-85 318.5 249 62.2
MELO3C017214.2 Cucumis melo HOM05D004561 ORTHO05D005315 2.3e-84 316.2 251 63.7
Gohir.D04G023500 Gossypium hirsutum HOM05D004561 ORTHO05D005315 2.3e-84 316.2 258 61.6
Gorai.012G033300 Gossypium raimondii HOM05D004561 ORTHO05D005315 2.3e-84 316.2 258 61.6
Manes.08G062966 Manihot esculenta HOM05D004561 ORTHO05D005315 6.6e-84 314.7 255 62.4
CsaV3_1G002780 Cucumis sativus L. HOM05D004561 ORTHO05D005315 1.9e-83 313.2 248 61.3
Sed0015683 Sechium edule HOM05D004561 ORTHO05D005315 5.6e-83 311.6 255 60.0
TWI15G0666 Tripterygium wilfordii HOM05D004561 ORTHO05D005315 1.3e-82 310.5 256 59.8
Peaxi162Scf00152g00158 Petunia axillaris HOM05D004561 ORTHO05D005315 6.2e-82 308.1 257 59.9
Sc18g0002470 Simmondsia chinensis HOM05D004561 ORTHO05D005315 4.0e-81 305.4 261 58.2
TWI81G0190 Tripterygium wilfordii HOM05D004561 ORTHO05D005315 4.0e-81 305.4 257 59.1
TAR628G1415 Trochodendron aralioides HOM05D004561 ORTHO05D005315 4.0e-81 305.4 259 59.1
Prupe.5G069900 Prunus persica HOM05D004561 ORTHO05D005315 9.0e-81 304.3 256 57.8
MSTRG.11225 Avicennia marina HOM05D004561 ORTHO05D005315 1.5e-80 303.5 254 58.7
HanXRQChr15g0480201 Helianthus annuus HOM05D004561 ORTHO05D005315 2.0e-80 303.1 256 57.4
MD16G1270300 Malus domestica HOM05D004561 ORTHO05D005315 2.0e-80 303.1 216 65.7
A09p50910 Brassica napus HOM05D004561 ORTHO05D005315 2.2e-79 299.7 218 70.2
Nitab4.5_0000422g0080 Nicotiana tabacum HOM05D004561 ORTHO05D005315 3.8e-79 298.9 238 61.3
PGSC0003DMG403029595 Solanum tuberosum HOM05D004561 ORTHO05D005315 3.8e-79 298.9 235 61.7
FvH4_7g18930 Fragaria vesca HOM05D004561 ORTHO05D005315 6.4e-79 298.1 257 56.4
FAN06G3856 Fragaria x ananassa HOM05D004561 ORTHO05D005315 6.4e-79 298.1 257 56.4
ECA233G0879 Erigeron canadensis HOM05D004561 ORTHO05D005315 8.4e-79 297.7 257 57.2
MSTRG.22847 Avicennia marina HOM05D004561 ORTHO05D005315 1.4e-78 297.0 254 57.5
FAN08G3218 Fragaria x ananassa HOM05D004561 ORTHO05D005315 2.4e-78 296.2 257 56.4
Lsat_1_v5_gn_7_30581 Lactuca sativa HOM05D004561 ORTHO05D005315 2.4e-78 296.2 257 55.6
Lj1A1185G61 Lonicera japonica HOM05D004561 ORTHO05D005315 3.2e-78 295.8 288 53.8
Cc03_g07430 Coffea canephora HOM05D004561 ORTHO05D005315 4.2e-78 295.4 260 58.1
Psat1g047920 Pisum sativum HOM05D004561 ORTHO05D005315 9.3e-78 294.3 255 56.5
Hund26218 Selenicereus undatus HOM05D004561 ORTHO05D005315 9.3e-78 294.3 216 63.0
FAN06G2746 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.6e-77 293.5 251 57.0
Nn5g27375 Nelumbo nucifera HOM05D004561 ORTHO05D005315 1.6e-77 293.5 250 56.8
FAN13G2292 Fragaria x ananassa HOM05D004561 ORTHO05D005315 6.0e-77 291.6 207 65.2
FAN18G3337 Fragaria x ananassa HOM05D004561 ORTHO05D005315 6.0e-77 291.6 207 65.2
Lalb_Chr12g0208781 Lupinus albus HOM05D004561 ORTHO05D005315 6.0e-77 291.6 254 56.7
SalBow3G1851 Salvia bowleyana HOM05D004561 ORTHO05D005315 1.0e-76 290.8 269 55.8
FvH4_5g18940 Fragaria vesca HOM05D004561 ORTHO05D005315 3.9e-76 288.9 257 55.6
Lj4g0004659 Lotus japonicus HOM05D004561 ORTHO05D005315 8.7e-76 287.7 255 54.1
PSO210G6857 Papaver somniferum HOM05D004561 ORTHO05D005315 8.7e-76 287.7 258 55.0
Medtr4g094538 Medicago truncatula HOM05D004561 ORTHO05D005315 1.1e-75 287.3 255 54.1
Eucgr.B03172 Eucalyptus grandis HOM05D004561 ORTHO05D005315 1.5e-75 287.0 253 56.9
FAN04G2378 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.5e-75 287.0 248 56.5
RcHm_v2.0_Chr7g0203331 Rosa chinensis HOM05D004561 ORTHO05D005315 4.3e-75 285.4 257 56.8
Aqoxy6G01699 Aquilegia oxysepala HOM05D004561 ORTHO05D005315 5.6e-75 285.0 250 54.4
TPR.G30372 Trifolium pratense HOM05D004561 ORTHO05D005315 9.6e-75 284.3 254 55.1
ClCG06G015750 Citrullus lanatus HOM05D000113 ORTHO05D002571 1.6e-74 283.5 234 59.0
VMungo0251G0557 Vigna mungo HOM05D004561 ORTHO05D005315 2.1e-74 283.1 216 61.1
Glyma.05G126500 Glycine max HOM05D004561 ORTHO05D005315 2.8e-74 282.7 216 61.6
Glyma.08G081300 Glycine max HOM05D004561 ORTHO05D005315 4.8e-74 282.0 256 54.3
CDE04G2633 Ceratophyllum demersum HOM05D004561 ORTHO05D005315 1.8e-73 280.0 216 58.3
Migut.I00621 Erythranthe guttata HOM05D004561 ORTHO05D005315 3.1e-73 279.3 254 54.3
Oeu031248.3 Olea europaea HOM05D004561 ORTHO05D005315 6.9e-73 278.1 287 53.0
Carub.0339s0001 Capsella rubella HOM05D004561 ORTHO05D005315 1.7e-71 273.5 141 88.7
Peaxi162Scf00310g00711 Petunia axillaris HOM05D004561 ORTHO05D005315 6.4e-71 271.6 229 60.7
ATR0661G441 Amborella trichopoda HOM05D004561 ORTHO05D005315 1.9e-70 270.0 255 53.3
BolC8t50963H Brassica oleracea HOM05D004561 ORTHO05D005315 2.5e-70 269.6 178 73.0
Zm00001eb433850 Zea mays HOM05D004561 ORTHO05D005315 7.1e-70 268.1 219 56.6
SGA_v2.0_scaffold37G14646 Striga asiatica HOM05D004561 ORTHO05D005315 1.0e-68 264.2 231 56.3
AUR62010959 Chenopodium quinoa HOM05D004561 ORTHO05D005315 6.7e-68 261.5 226 55.3
Phvul.002G198500 Phaseolus vulgaris HOM05D004561 ORTHO05D005315 8.7e-68 261.2 200 61.5
vmacro18667 Vaccinium macrocarpon HOM05D004561 ORTHO05D005315 1.9e-67 260.0 314 45.2
AUR62007426 Chenopodium quinoa HOM05D004561 ORTHO05D005315 9.6e-67 257.7 226 54.4
Os04g0678800 Oryza sativa ssp. japonica HOM05D004561 ORTHO05D005315 2.1e-66 256.5 250 50.4
unitig_744.g24647 Utricularia gibba HOM05D004561 ORTHO05D005315 3.7e-66 255.8 266 50.8
AUR62021469 Chenopodium quinoa HOM05D004561 ORTHO05D005315 8.2e-66 254.6 208 57.2
SalBow1G5912 Salvia bowleyana HOM05D004561 ORTHO05D005315 1.8e-65 253.4 200 62.5
BcaC07g40185 Brassica carinata HOM05D004561 ORTHO05D005315 1.2e-64 250.8 216 61.1
Rhsim06G0237000 Rhododendron simsii HOM05D004561 ORTHO05D005315 1.7e-63 246.9 275 45.1
EL10Ac8g18446 Beta vulgaris HOM05D004561 ORTHO05D005315 4.9e-63 245.4 224 53.6
SHI05351 Sapria himalayana HOM05D004561 ORTHO05D005315 4.9e-63 245.4 219 55.7
DCAR_002722 Daucus carota HOM05D004561 ORTHO05D005315 1.9e-62 243.4 182 61.5
Sopen11g009350 Solanum pennellii HOM05D004561 ORTHO05D005315 1.8e-60 236.9 180 62.2
Lj6g0005186 Lotus japonicus HOM05D004561 ORTHO05D005315 2.2e-58 229.9 202 53.5
CAN.G1530.1 Capsicum annuum HOM05D004561 ORTHO05D005315 5.9e-56 221.9 177 59.3
RcHm_v2.0_Chr7g0203411 Rosa chinensis HOM05D004561 ORTHO05D005315 1.3e-55 220.7 235 49.4
AagrBONN_evm.TU.Sc2ySwM_368.3407 Anthoceros agrestis HOM05D004561 ORTHO05D005315 3.8e-55 219.2 262 44.3
arahy.Tifrunner.gnm1.ann1.AX2CN5 Arachis hypogaea HOM05D004561 ORTHO05D005315 5.0e-55 218.8 260 46.5
FAN18G2677 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.4e-52 210.7 182 56.6
Pp3c13_19470 Physcomitrium patens HOM05D004561 ORTHO05D005315 6.5e-47 191.8 217 42.9
arahy.Tifrunner.gnm1.ann1.3X42ZC Arachis hypogaea HOM05D004561 ORTHO05D005315 8.5e-47 191.4 164 57.9
vmacro21453 Vaccinium macrocarpon HOM05D004561 ORTHO05D005315 1.4e-44 184.1 125 64.8
Zm00001eb066050 Zea mays HOM05D004561 ORTHO05D005315 1.4e-44 184.1 145 56.6
HPP92_027560 Vanilla planifolia HOM05D004561 ORTHO05D005315 3.0e-44 183.0 190 46.8
ECA236G3170 Erigeron canadensis HOM05D004561 ORTHO05D005315 8.8e-44 181.4 143 56.6
Carub.0008s0419 Capsella rubella HOM05D004561 ORTHO05D005315 5.7e-43 178.7 124 74.2
PSO761G0502 Papaver somniferum HOM05D004561 ORTHO05D005315 5.7e-43 178.7 171 52.6
AUR62002652 Chenopodium quinoa HOM05D004561 ORTHO05D005315 3.7e-42 176.0 218 42.2
Mapoly0029s0047 Marchantia polymorpha HOM05D004561 ORTHO05D005315 3.7e-42 176.0 207 43.0
Nitab4.5_0000560g0110 Nicotiana tabacum HOM05D004561 ORTHO05D005315 4.8e-42 175.6 148 56.8
Haze_18936 Corylus avellana HOM05D004561 ORTHO05D005315 1.0e-39 167.9 164 54.3
Cpa.g.sc437.1 Carica papaya HOM05D004561 ORTHO05D005315 1.1e-38 164.5 130 63.1
CiPaw.16G098200 Carya illinoinensis HOM05D004561 ORTHO05D005315 1.2e-37 161.0 147 57.1
Sopen08g022960 Solanum pennellii HOM05D004561 ORTHO05D005315 3.0e-36 156.4 126 58.7
MCO09G807 Micromonas commoda HOM05D004561 ORTHO05D005315 1.7e-34 150.6 215 37.7
CBR_g12600 Chara braunii HOM05D005240 ORTHO05D006471 2.2e-31 140.2 360 27.2
Hund02231 Selenicereus undatus HOM05D004561 ORTHO05D005315 2.9e-31 139.8 192 38.5
MD06G1059000 Malus domestica HOM05D004561 ORTHO05D005315 6.5e-31 138.7 110 61.8
CSS0036958 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 2.5e-30 136.7 88 70.5
CSS0005948 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 3.2e-30 136.3 129 54.3
CSS0005045 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 4.2e-30 136.0 129 54.3
Hund26251 Selenicereus undatus HOM05D004561 ORTHO05D005315 4.2e-30 136.0 113 55.8
CSS0006634 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 1.2e-29 134.4 129 52.7
PRCOL_00001899 Prasinoderma coloniale HOM05D004561 ORTHO05D005315 2.0e-27 127.1 225 30.2
Cre06.g300100 Chlamydomonas reinhardtii HOM05D004561 ORTHO05D005315 1.7e-26 124.0 256 29.7
Sopen05g006540 Solanum pennellii HOM05D004561 ORTHO05D005315 4.8e-26 122.5 149 47.0
SalBow1G4548 Salvia bowleyana HOM05D004561 ORTHO05D005315 3.8e-23 112.8 97 55.7
SalBow1G7315 Salvia bowleyana HOM05D004561 ORTHO05D005315 8.0e-21 105.1 236 32.6
arahy.Tifrunner.gnm1.ann1.Y05SLV Arachis hypogaea HOM05D004561 ORTHO05D005315 2.3e-20 103.6 96 53.1
Cpa.g.c32558.1 Carica papaya HOM05D004561 ORTHO05D005315 2.0e-19 100.5 97 54.6
SalBow1G2796 Salvia bowleyana HOM05D004561 ORTHO05D005315 5.7e-19 99.0 66 60.6
MBI08_g32523_MAGBIO Magnolia biondii HOM05D004561 ORTHO05D005315 9.8e-19 98.2 76 64.5
SalBow1G5331 Salvia bowleyana HOM05D004561 ORTHO05D005315 1.3e-18 97.8 66 62.1
SalBow1G4039 Salvia bowleyana HOM05D004561 ORTHO05D005315 1.7e-18 97.4 66 57.6
Solyc05g010730.3 Solanum lycopersicum HOM05D004561 ORTHO05D005315 4.1e-17 92.8 68 66.2
Nitab4.5_0013603g0010 Nicotiana tabacum HOM05D004561 ORTHO05D005315 3.5e-16 89.7 71 62.0
SEGI_12631 Sequoiadendron giganteum HOM05D004561 ORTHO05D005315 3.5e-16 89.7 74 56.8
SalBow1G6765 Salvia bowleyana HOM05D004561 ORTHO05D005315 9.5e-14 81.6 78 51.3
SHI05852 Sapria himalayana HOM05D000002 ORTHO05D000001 1.8e-12 77.4 118 39.0
SalBow1G0427 Salvia bowleyana HOM05D006885 ORTHO05D008606 4.9e-10 69.3 58 51.7
RcHm_v2.0_Chr7g0204241 Rosa chinensis HOM05D004561 ORTHO05D005315 3.2e-09 66.6 87 42.5
SalBow1G4445 Salvia bowleyana HOM05D025598 ORTHO05D005315 1.2e-08 64.7 42 69.0
RcHm_v2.0_Chr7g0204201 Rosa chinensis HOM05D004561 ORTHO05D005315 1.6e-08 64.3 79 44.3
SHI05337 Sapria himalayana HOM05D004561 ORTHO05D005315 4.5e-08 62.8 79 39.2
Ca_17309_v3 Cicer arietinum L. HOM05D002967 ORTHO05D003281 1.3e-07 61.2 76 39.5
Cc05_g02560 Coffea canephora HOM05D004561 ORTHO05D005315 8.6e-07 58.5 65 49.2
FvH4_5g18980 Fragaria vesca HOM05D004561 ORTHO05D005315 2.5e-06 57.0 46 54.3


User provided reference genes

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