Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G26540 Arabidopsis thaliana HOM05D000561 ORTHO05D008162 1.2e-167 593.2 322 100.0
AL4G19400 Arabidopsis lyrata HOM05D000561 ORTHO05D008162 3.0e-142 508.8 319 85.6
Carub.0003s2738 Capsella rubella HOM05D000561 ORTHO05D008162 1.9e-128 463.0 304 83.9
CARHR050650 Cardamine hirsuta HOM05D000561 ORTHO05D008162 8.7e-126 454.1 313 78.6
Sp4g07760 Schrenkiella parvula HOM05D000561 ORTHO05D008162 7.4e-125 451.1 312 78.5
BcaB08g35302 Brassica carinata HOM05D000561 ORTHO05D008162 5.1e-118 428.3 308 73.4
A09p55150 Brassica napus HOM05D000561 ORTHO05D008162 1.6e-116 423.3 309 72.8
BraA09t40923Z Brassica rapa HOM05D000561 ORTHO05D008162 1.8e-115 419.9 309 72.5
C08p38080 Brassica napus HOM05D000561 ORTHO05D008162 4.1e-115 418.7 309 71.8
Thhalv10001252m.g Eutrema salsugineum HOM05D000561 ORTHO05D008162 2.6e-114 416.0 312 73.1
BolC8t51383H Brassica oleracea HOM05D000561 ORTHO05D008162 2.9e-113 412.5 309 70.9
Aa31LG10G9880 Aethionema arabicum HOM05D000561 ORTHO05D008162 5.5e-112 408.3 298 73.5
BcaC07g40815 Brassica carinata HOM05D000561 ORTHO05D008162 2.2e-108 396.4 309 67.6
THA.LOC104803685 Tarenaya hassleriana HOM05D000561 ORTHO05D008162 7.7e-106 387.9 250 76.0
Carub.0004s0671 Capsella rubella HOM05D000561 ORTHO05D008162 8.2e-100 367.9 313 70.3
Potri.014G034700 Populus trichocarpa HOM05D000561 ORTHO05D008162 1.6e-98 363.6 305 64.3
Atru.chr13.629 Acer truncatum HOM05D000561 ORTHO05D008162 5.9e-98 361.7 250 69.6
Atru.chr13.633 Acer truncatum HOM05D000561 ORTHO05D008162 5.9e-98 361.7 250 69.6
Duzib116G0222 Durio zibethinus HOM05D000561 ORTHO05D008162 1.1e-96 357.5 311 62.4
Ciclev10001965m.g Citrus clementina HOM05D000561 ORTHO05D008162 7.2e-96 354.8 248 72.6
Psat5g044440 Pisum sativum HOM05D000561 ORTHO05D008162 1.2e-95 354.0 288 62.8
QL02p005893 Quercus lobata HOM05D000561 ORTHO05D008162 3.6e-95 352.4 251 71.7
Prupe.1G440800 Prunus persica HOM05D000561 ORTHO05D008162 4.7e-95 352.1 249 69.1
RcHm_v2.0_Chr6g0307161 Rosa chinensis HOM05D000561 ORTHO05D008162 6.1e-95 351.7 297 62.6
MD08G1106500 Malus domestica HOM05D000561 ORTHO05D008162 8.0e-95 351.3 305 61.3
arahy.Tifrunner.gnm1.ann1.YYC1CT Arachis hypogaea HOM05D000561 ORTHO05D008162 2.3e-94 349.7 250 69.6
TPR.G10521 Trifolium pratense HOM05D000561 ORTHO05D008162 2.3e-94 349.7 302 59.6
CiPaw.16G047800 Carya illinoinensis HOM05D000561 ORTHO05D008162 4.0e-94 349.0 247 69.6
Nn5g30201 Nelumbo nucifera HOM05D000561 ORTHO05D000514 4.0e-94 349.0 247 69.6
TWI56G0230 Tripterygium wilfordii HOM05D000561 ORTHO05D008162 2.6e-93 346.3 250 70.4
Gohir.D05G203500 Gossypium hirsutum HOM05D000561 ORTHO05D008162 4.4e-93 345.5 316 59.8
Lj1g0015016 Lotus japonicus HOM05D000561 ORTHO05D008162 5.7e-93 345.1 250 67.2
Medtr3g101350 Medicago truncatula HOM05D000561 ORTHO05D008162 5.7e-93 345.1 284 61.3
MD15G1087100 Malus domestica HOM05D000561 ORTHO05D008162 1.7e-92 343.6 306 58.8
Sed0001510 Sechium edule HOM05D000561 ORTHO05D008162 2.2e-92 343.2 250 67.6
Duzib093G1567 Durio zibethinus HOM05D000561 ORTHO05D008162 4.8e-92 342.0 308 61.0
TAR625G0340 Trochodendron aralioides HOM05D000561 ORTHO05D008162 8.2e-92 341.3 247 66.8
Dinv39338 Davidia involucrata HOM05D000561 ORTHO05D008162 4.1e-91 339.0 280 62.5
Gorai.009G209500 Gossypium raimondii HOM05D000561 ORTHO05D008162 4.1e-91 339.0 317 59.3
TAR628G0509 Trochodendron aralioides HOM05D000561 ORTHO05D008162 5.3e-91 338.6 294 60.9
CSS0036187 Camellia sinensis var. sinensis HOM05D000561 ORTHO05D008162 7.0e-91 338.2 247 68.0
ClCG08G015630 Citrullus lanatus HOM05D000561 ORTHO05D008162 1.6e-90 337.0 297 59.9
Gohir.A05G200200 Gossypium hirsutum HOM05D000561 ORTHO05D008162 1.6e-90 337.0 316 58.9
Lalb_Chr08g0245641 Lupinus albus HOM05D000561 ORTHO05D008162 1.6e-90 337.0 301 59.1
Sabra14G0024600 Salix brachista HOM05D000561 ORTHO05D008162 1.6e-90 337.0 296 63.5
FAN27G1876 Fragaria x ananassa HOM05D000561 ORTHO05D008162 2.0e-90 336.7 316 60.4
Phvul.009G063100 Phaseolus vulgaris HOM05D000561 ORTHO05D008162 2.7e-90 336.3 292 59.2
CsaV3_2G028140 Cucumis sativus L. HOM05D000561 ORTHO05D008162 3.5e-90 335.9 250 67.2
Cc10_g03990 Coffea canephora HOM05D000561 ORTHO05D008162 5.9e-90 335.1 246 66.3
Hma1.2p1_0260F.1_g104740 Hydrangea macrophylla HOM05D000561 ORTHO05D008162 1.0e-89 334.3 319 58.6
GSVIVG01009559001 Vitis vinifera HOM05D000561 ORTHO05D008162 1.0e-89 334.3 306 58.2
CAN.G371.47 Capsicum annuum HOM05D000561 ORTHO05D008162 2.2e-89 333.2 247 66.0
MELO3C010892.2 Cucumis melo HOM05D000561 ORTHO05D008162 2.9e-89 332.8 250 66.8
Os03g0186100 Oryza sativa ssp. japonica HOM05D000561 ORTHO05D008162 2.9e-89 332.8 250 65.2
PSO675G5921 Papaver somniferum HOM05D000561 ORTHO05D008162 3.8e-89 332.4 283 61.5
Glyma.06G037300 Glycine max HOM05D000561 ORTHO05D008162 5.0e-89 332.0 248 65.7
Manes.05G170800 Manihot esculenta HOM05D000561 ORTHO05D008162 5.0e-89 332.0 310 59.7
Haze_17567 Corylus avellana HOM05D000561 ORTHO05D008162 1.1e-88 330.9 296 62.2
PSO541G5839 Papaver somniferum HOM05D000561 ORTHO05D008162 1.5e-88 330.5 282 61.3
COL.COLO4_26457 Corchorus olitorius HOM05D000561 ORTHO05D008162 2.5e-88 329.7 228 69.7
vmacro21557 Vaccinium macrocarpon HOM05D000561 ORTHO05D008162 3.2e-88 329.3 250 66.4
Thecc.08G013400 Theobroma cacao HOM05D000561 ORTHO05D008162 5.5e-88 328.6 275 62.5
CDE06G2652 Ceratophyllum demersum HOM05D000561 ORTHO05D008162 2.1e-87 326.6 291 59.1
FvH4_2g34880 Fragaria vesca HOM05D000561 ORTHO05D008162 2.7e-87 326.2 283 63.6
Actinidia22609 Actinidia chinensis HOM05D000561 ORTHO05D008162 3.6e-87 325.9 306 57.2
Migut.C00604 Erythranthe guttata HOM05D000561 ORTHO05D008162 3.6e-87 325.9 247 65.6
MBI06_g08185_MAGBIO Magnolia biondii HOM05D000561 ORTHO05D008162 4.7e-87 325.5 318 53.8
Nitab4.5_0005549g0040 Nicotiana tabacum HOM05D000561 ORTHO05D008162 6.1e-87 325.1 236 67.4
Rhsim06G0046600 Rhododendron simsii HOM05D000561 ORTHO05D008162 8.0e-87 324.7 250 64.4
ECA232G0584 Erigeron canadensis HOM05D000561 ORTHO05D008162 1.4e-86 323.9 246 63.0
Zm00001eb006450 Zea mays HOM05D000561 ORTHO05D008162 1.4e-86 323.9 258 61.6
HanXRQChr09g0268001 Helianthus annuus HOM05D000561 ORTHO05D008162 1.8e-86 323.6 302 57.6
Nitab4.5_0000068g0440 Nicotiana tabacum HOM05D000561 ORTHO05D008162 1.8e-86 323.6 236 66.9
Aqoxy6G01386 Aquilegia oxysepala HOM05D000561 ORTHO05D008162 4.0e-86 322.4 246 65.0
HanXRQChr02g0038741 Helianthus annuus HOM05D000561 ORTHO05D008162 8.8e-86 321.2 246 63.0
Solyc04g079320.4 Solanum lycopersicum HOM05D000561 ORTHO05D008162 8.8e-86 321.2 247 64.0
Sopen04g032930 Solanum pennellii HOM05D000561 ORTHO05D008162 8.8e-86 321.2 247 64.0
Ca_15966_v3 Cicer arietinum L. HOM05D000561 ORTHO05D008162 1.2e-85 320.9 238 66.8
DCAR_019467 Daucus carota HOM05D000561 ORTHO05D008162 1.3e-84 317.4 245 63.3
Manes.18G034000 Manihot esculenta HOM05D000561 ORTHO05D008162 2.8e-84 316.2 294 58.8
Eucgr.F02370 Eucalyptus grandis HOM05D000561 ORTHO05D008162 3.7e-84 315.8 227 68.7
MSTRG.1332 Avicennia marina HOM05D000561 ORTHO05D008162 5.4e-83 312.0 290 56.2
HPP92_011186 Vanilla planifolia HOM05D000561 ORTHO05D008162 2.0e-82 310.1 320 52.2
Lsat_1_v5_gn_4_124200 Lactuca sativa HOM05D000561 ORTHO05D008162 5.9e-82 308.5 309 57.0
Peaxi162Scf00566g00219 Petunia axillaris HOM05D000561 ORTHO05D008162 7.7e-82 308.1 236 66.5
Lsat_1_v5_gn_1_20480 Lactuca sativa HOM05D000561 ORTHO05D008162 2.9e-81 306.2 246 62.2
PGR031G3300 Punica granatum HOM05D000561 ORTHO05D008162 2.9e-81 306.2 227 67.0
Sabra02G0100300 Salix brachista HOM05D000561 ORTHO05D008162 1.1e-80 304.3 226 67.7
Migut.O00512 Erythranthe guttata HOM05D000561 ORTHO05D008162 4.2e-80 302.4 323 50.2
EL10Ac1g01805 Beta vulgaris HOM05D000561 ORTHO05D008162 1.0e-78 297.7 285 57.2
SGA_v2.0_scaffold71G24043 Striga asiatica HOM05D000561 ORTHO05D008162 5.2e-78 295.4 251 60.6
ATR0087G004 Amborella trichopoda HOM05D000561 ORTHO05D008162 6.8e-78 295.0 227 63.0
SalBow7G2378 Salvia bowleyana HOM05D000561 ORTHO05D008162 2.2e-76 290.0 340 48.5
FAN20G2490 Fragaria x ananassa HOM05D000561 ORTHO05D008162 4.5e-74 282.3 370 48.1
Pp3c9_18350 Physcomitrium patens HOM05D000561 ORTHO05D008162 2.5e-72 276.6 293 49.5
Hund26617 Selenicereus undatus HOM05D000561 ORTHO05D008162 3.3e-72 276.2 435 41.6
AagrBONN_evm.TU.Sc2ySwM_228.1283 Anthoceros agrestis HOM05D000561 ORTHO05D008162 9.5e-72 274.6 267 53.2
VMungo1309G1588 Vigna mungo HOM05D000561 ORTHO05D008162 3.6e-71 272.7 231 59.7
Cpa.g.sc64.2 Carica papaya HOM05D000561 ORTHO05D008162 2.6e-69 266.5 187 71.7
Mapoly0101s0072 Marchantia polymorpha HOM05D000561 ORTHO05D008162 2.6e-69 266.5 246 54.5
SHI08313 Sapria himalayana HOM05D000561 ORTHO05D008162 1.6e-66 257.3 252 54.8
Lj4A51T47 Lonicera japonica HOM05D000561 ORTHO05D008162 5.9e-66 255.4 190 66.3
Ah.06g192790 Amaranthus hybridus HOM05D000561 ORTHO05D008162 1.3e-65 254.2 280 51.8
Glyma.04G037000 Glycine max HOM05D000561 ORTHO05D008162 8.6e-65 251.5 193 64.8
SEGI_40608 Sequoiadendron giganteum HOM05D000561 ORTHO05D008162 7.3e-64 248.4 243 52.7
AUR62022458 Chenopodium quinoa HOM05D000561 ORTHO05D008162 2.6e-61 240.0 245 56.7
SMO367G0032 Selaginella moellendorffii HOM05D000561 ORTHO05D008162 1.7e-60 237.3 247 48.6
ECA247G1201 Erigeron canadensis HOM05D000561 ORTHO05D000514 3.7e-60 236.1 193 59.1
CBR_g12178 Chara braunii HOM05D000561 ORTHO05D008162 8.6e-57 224.9 269 44.6
AUR62040067 Chenopodium quinoa HOM05D000561 ORTHO05D008162 2.9e-52 209.9 305 45.6
Cre09.g409100 Chlamydomonas reinhardtii HOM05D000561 ORTHO05D008162 8.3e-52 208.4 243 45.7
Sc26g0003980 Simmondsia chinensis HOM05D000561 ORTHO05D008162 2.4e-51 206.8 195 57.9
CDE10G0258 Ceratophyllum demersum HOM05D000561 ORTHO05D008162 2.1e-50 203.8 189 57.7
arahy.Tifrunner.gnm1.ann1.96H4RR Arachis hypogaea HOM05D000561 ORTHO05D008162 1.3e-49 201.1 142 71.1
MCO15G161 Micromonas commoda HOM05D000561 ORTHO05D008162 1.7e-49 200.7 247 45.7
Migut.N02692 Erythranthe guttata HOM05D000561 ORTHO05D008162 7.3e-48 195.3 193 53.4
PRCOL_00005348 Prasinoderma coloniale HOM05D000561 ORTHO05D008162 1.1e-46 191.4 250 42.4
unitig_32.g11128 Utricularia gibba HOM05D000561 ORTHO05D008162 4.6e-42 176.0 136 62.5
Lsat_1_v5_gn_2_45600 Lactuca sativa HOM05D000561 ORTHO05D008162 6.0e-34 149.1 205 42.4
SGA_v2.0_scaffold217G42442 Striga asiatica HOM05D000561 ORTHO05D008162 3.0e-33 146.7 119 63.0
Lsat_1_v5_gn_5_145360 Lactuca sativa HOM05D000561 ORTHO05D008162 7.6e-29 132.1 163 46.0
SGA_v2.0_scaffold217G42441 Striga asiatica HOM05D000561 ORTHO05D008162 1.2e-21 108.2 79 62.0
Lsat_1_v5_gn_5_39421 Lactuca sativa HOM05D000487 ORTHO05D048384 1.3e-17 94.7 81 54.3


User provided reference genes

Program Settings