Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G26350 Arabidopsis thaliana HOM05D005831 ORTHO05D007007 3.9e-182 641.3 327 100.0
AL4G18970 Arabidopsis lyrata HOM05D005831 ORTHO05D007007 3.4e-170 601.7 327 94.5
Carub.0004s0626 Capsella rubella HOM05D005831 ORTHO05D007007 1.4e-163 579.7 327 90.8
Sp4g07000 Schrenkiella parvula HOM05D005831 ORTHO05D007007 1.0e-158 563.5 324 89.8
BcaB08g35248 Brassica carinata HOM05D005831 ORTHO05D007007 3.1e-155 552.0 321 88.8
Thhalv10002014m.g Eutrema salsugineum HOM05D005831 ORTHO05D007007 4.5e-154 548.1 317 88.0
BcaC07g40824 Brassica carinata HOM05D005831 ORTHO05D007007 9.4e-152 540.4 321 86.9
A09p54720 Brassica napus HOM05D005831 ORTHO05D007007 1.8e-150 536.2 321 85.7
A09p55230 Brassica napus HOM05D005831 ORTHO05D007007 1.5e-149 533.1 322 85.7
BraA09t40881Z Brassica rapa HOM05D005831 ORTHO05D007007 1.5e-149 533.1 322 85.7
C08p38160 Brassica napus HOM05D005831 ORTHO05D007007 1.6e-146 523.1 324 85.2
BolC8t51391H Brassica oleracea HOM05D005831 ORTHO05D007007 1.6e-146 523.1 324 85.2
BraA09t40930Z Brassica rapa HOM05D005831 ORTHO05D007007 9.4e-144 513.8 311 85.5
Aa31LG5G18500 Aethionema arabicum HOM05D005831 ORTHO05D007007 3.6e-143 511.9 329 82.1
Cpa.g.sc126.34 Carica papaya HOM05D005831 ORTHO05D007007 3.5e-122 442.2 328 69.8
Potri.006G222000 Populus trichocarpa HOM05D005831 ORTHO05D007007 6.6e-121 438.0 339 70.2
GSVIVG01035453001 Vitis vinifera HOM05D005831 ORTHO05D007007 1.5e-120 436.8 308 72.1
Thecc.09G062000 Theobroma cacao HOM05D005831 ORTHO05D007007 4.3e-120 435.3 334 69.2
COL.COLO4_21126 Corchorus olitorius HOM05D005831 ORTHO05D007007 5.6e-120 434.9 339 68.4
Hma1.2p1_0231F.1_g097400 Hydrangea macrophylla HOM05D005831 ORTHO05D007007 5.6e-120 434.9 308 71.8
Gorai.001G020700 Gossypium raimondii HOM05D005831 ORTHO05D007007 8.9e-118 427.6 330 67.9
Manes.03G052700 Manihot esculenta HOM05D005831 ORTHO05D007007 3.4e-117 425.6 329 68.4
Nitab4.5_0000446g0240 Nicotiana tabacum HOM05D005831 ORTHO05D007007 3.4e-117 425.6 327 67.9
CiPaw.15G092600 Carya illinoinensis HOM05D005831 ORTHO05D007007 4.4e-117 425.2 335 68.1
Duzib150G1275 Durio zibethinus HOM05D005831 ORTHO05D007007 4.4e-117 425.2 325 68.9
Gohir.D07G020000 Gossypium hirsutum HOM05D005831 ORTHO05D007007 1.4e-115 420.2 321 68.5
MBI19_g11845_MAGBIO Magnolia biondii HOM05D005831 ORTHO05D007007 2.4e-115 419.5 325 69.2
vmacro07801 Vaccinium macrocarpon HOM05D005831 ORTHO05D007007 9.2e-115 417.5 308 66.6
CANSAT25G0005 Cannabis sativa HOM05D005831 ORTHO05D007007 1.2e-114 417.2 323 66.6
PGR004G2090 Punica granatum HOM05D005831 ORTHO05D007007 1.2e-114 417.2 304 70.1
QL04p096581 Quercus lobata HOM05D005831 ORTHO05D007007 2.7e-114 416.0 305 69.8
Cc08_g01270 Coffea canephora HOM05D005831 ORTHO05D007007 4.6e-114 415.2 337 64.7
Actinidia25695 Actinidia chinensis HOM05D005831 ORTHO05D007007 1.0e-113 414.1 327 65.1
Cfa018014 Carpinus fangiana HOM05D005831 ORTHO05D007007 1.0e-113 414.1 332 66.3
Nitab4.5_0009773g0010 Nicotiana tabacum HOM05D005831 ORTHO05D007007 2.3e-113 412.9 313 68.1
DCAR_003715 Daucus carota HOM05D005831 ORTHO05D007007 3.9e-113 412.1 329 66.6
Sopen04g034540 Solanum pennellii HOM05D005831 ORTHO05D007007 3.9e-113 412.1 317 66.9
PGSC0003DMG400003758 Solanum tuberosum HOM05D005831 ORTHO05D007007 3.9e-113 412.1 317 67.5
RcHm_v2.0_Chr6g0311631 Rosa chinensis HOM05D005831 ORTHO05D007007 6.6e-113 411.4 307 70.0
MSTRG.25981 Avicennia marina HOM05D005831 ORTHO05D007007 8.6e-113 411.0 327 66.7
Solyc04g080930.4 Solanum lycopersicum HOM05D005831 ORTHO05D007007 1.1e-112 410.6 317 66.6
THA.LOC104806019 Tarenaya hassleriana HOM05D005831 ORTHO05D007007 1.1e-112 410.6 344 65.7
FvH4_2g31140 Fragaria vesca HOM05D005831 ORTHO05D007007 3.3e-112 409.1 326 68.1
FAN24G1737 Fragaria x ananassa HOM05D005831 ORTHO05D007007 3.3e-112 409.1 326 68.1
Glyma.14G099100 Glycine max HOM05D005831 ORTHO05D007007 4.3e-112 408.7 303 69.0
Aqoxy3G01546 Aquilegia oxysepala HOM05D005831 ORTHO05D007007 5.6e-112 408.3 341 63.0
Glyma.17G225600 Glycine max HOM05D005831 ORTHO05D007007 5.6e-112 408.3 325 66.8
Eucgr.C03149 Eucalyptus grandis HOM05D005831 ORTHO05D007007 9.5e-112 407.5 329 65.0
CSS0021293 Camellia sinensis var. sinensis HOM05D005831 ORTHO05D007007 1.2e-111 407.1 331 64.0
CAN.G6.15 Capsicum annuum HOM05D005831 ORTHO05D007007 1.2e-111 407.1 297 68.7
Lsat_1_v5_gn_5_79500 Lactuca sativa HOM05D005831 ORTHO05D007007 2.1e-111 406.4 327 64.5
Prupe.1G405700 Prunus persica HOM05D005831 ORTHO05D007007 2.1e-111 406.4 308 68.5
VMungo0647G0599 Vigna mungo HOM05D005831 ORTHO05D007007 3.6e-111 405.6 328 67.4
Migut.A00086 Erythranthe guttata HOM05D005831 ORTHO05D007007 4.7e-111 405.2 318 66.4
CsaV3_4G036010 Cucumis sativus L. HOM05D005831 ORTHO05D007007 6.2e-111 404.8 325 65.8
MD08G1070400 Malus domestica HOM05D005831 ORTHO05D007007 8.0e-111 404.4 326 65.6
MD15G1051800 Malus domestica HOM05D005831 ORTHO05D007007 1.1e-110 404.1 321 65.7
Medtr1g015390 Medicago truncatula HOM05D005831 ORTHO05D007007 2.3e-110 402.9 323 65.0
ECA234G1597 Erigeron canadensis HOM05D005831 ORTHO05D007007 3.1e-110 402.5 312 67.0
Sed0012871 Sechium edule HOM05D005831 ORTHO05D007007 5.2e-110 401.7 322 64.9
Lj5g0001901 Lotus japonicus HOM05D005831 ORTHO05D007007 6.8e-110 401.4 304 66.4
Phvul.001G039000 Phaseolus vulgaris HOM05D005831 ORTHO05D007007 8.9e-110 401.0 325 65.5
TAR383G0824 Trochodendron aralioides HOM05D005831 ORTHO05D007007 2.0e-109 399.8 299 68.9
Peaxi162Scf00101g01522 Petunia axillaris HOM05D005831 ORTHO05D007007 2.6e-109 399.4 321 65.7
Ciclev10025877m.g Citrus clementina HOM05D005831 ORTHO05D007007 4.4e-109 398.7 308 70.1
Rhsim03G0040100 Rhododendron simsii HOM05D005831 ORTHO05D007007 5.8e-109 398.3 307 65.8
EL10Ac2g03793 Beta vulgaris HOM05D005831 ORTHO05D007007 1.3e-108 397.1 308 67.9
ClCG05G015690 Citrullus lanatus HOM05D005831 ORTHO05D007007 1.7e-108 396.7 326 65.3
FAN15G1366 Fragaria x ananassa HOM05D005831 ORTHO05D007007 2.2e-108 396.4 324 66.4
SalBow4G2055 Salvia bowleyana HOM05D005831 ORTHO05D001900 2.9e-108 396.0 317 65.0
HanXRQChr12g0359011 Helianthus annuus HOM05D005831 ORTHO05D007007 3.7e-108 395.6 320 64.7
PSO210G0521 Papaver somniferum HOM05D005831 ORTHO05D007007 4.9e-108 395.2 312 66.0
TWI15G0825 Tripterygium wilfordii HOM05D005831 ORTHO05D007007 6.4e-108 394.8 325 66.2
Haze_18115 Corylus avellana HOM05D005831 ORTHO05D007007 1.4e-107 393.7 330 64.2
PSO210G7793 Papaver somniferum HOM05D005831 ORTHO05D007007 3.2e-107 392.5 308 67.5
Nn8g38706 Nelumbo nucifera HOM05D005831 ORTHO05D007007 4.1e-107 392.1 330 63.9
Lalb_Chr09g0334801 Lupinus albus HOM05D005831 ORTHO05D007007 5.4e-107 391.7 304 65.8
AUR62020581 Chenopodium quinoa HOM05D005831 ORTHO05D007007 7.8e-106 387.9 306 67.0
Oeu027284.3 Olea europaea HOM05D005831 ORTHO05D007007 7.3e-104 381.3 369 56.1
Sc09g0010090 Simmondsia chinensis HOM05D005831 ORTHO05D007007 6.8e-102 374.8 307 65.8
unitig_748.g8240 Utricularia gibba HOM05D005831 ORTHO05D007007 1.7e-100 370.2 311 61.4
AUR62009089 Chenopodium quinoa HOM05D005831 ORTHO05D007007 1.7e-97 360.1 311 63.7
ATR0598G074 Amborella trichopoda HOM05D005831 ORTHO05D007007 1.6e-95 353.6 327 59.6
Os07g0608800 Oryza sativa ssp. japonica HOM05D005831 ORTHO05D007007 3.6e-95 352.4 324 58.6
CDE06G1722 Ceratophyllum demersum HOM05D005831 ORTHO05D007007 1.8e-94 350.1 285 65.3
Dinv41837 Davidia involucrata HOM05D005831 ORTHO05D007007 1.8e-94 350.1 269 67.3
TWI38G0260 Tripterygium wilfordii HOM05D005831 ORTHO05D007007 2.4e-94 349.7 324 60.2
Sabra06G0171700 Salix brachista HOM05D005831 ORTHO05D007007 4.9e-92 342.0 354 58.2
Gohir.A07G020300 Gossypium hirsutum HOM05D005831 ORTHO05D007007 3.0e-89 332.8 257 67.7
arahy.Tifrunner.gnm1.ann1.2ULK6I Arachis hypogaea HOM05D005831 ORTHO05D007007 2.1e-87 326.6 321 56.7
Lj2A627G34 Lonicera japonica HOM05D005831 ORTHO05D007007 1.1e-86 324.3 327 57.2
Migut.A00085 Erythranthe guttata HOM05D005831 ORTHO05D007007 4.2e-83 312.4 264 61.4
Psat6g022600 Pisum sativum HOM05D005831 ORTHO05D007007 1.0e-81 307.8 250 63.6
Ca_13107_v3 Cicer arietinum L. HOM05D005831 ORTHO05D007007 3.0e-81 306.2 330 53.0
TPR.G10653 Trifolium pratense HOM05D005831 ORTHO05D007007 4.8e-79 298.9 244 64.3
Hma1.2p1_0231F.1_g097410 Hydrangea macrophylla HOM05D005831 ORTHO05D007007 2.2e-76 290.0 232 65.1
Sed0000493 Sechium edule HOM05D005831 ORTHO05D007007 1.6e-74 283.9 250 59.6
Aqoxy2G00096 Aquilegia oxysepala HOM05D005831 ORTHO05D007007 3.0e-73 279.6 341 48.7
FAN27G2028 Fragaria x ananassa HOM05D005831 ORTHO05D007007 9.6e-72 274.6 229 64.2
SGA_v2.0_scaffold64G21865 Striga asiatica HOM05D005831 ORTHO05D007007 3.7e-71 272.7 222 64.0
Mapoly0029s0064 Marchantia polymorpha HOM05D005831 ORTHO05D007007 2.4e-70 270.0 316 47.2
Zm00001eb108960 Zea mays HOM05D005831 ORTHO05D007007 1.3e-68 264.2 234 58.5
FAN20G1335 Fragaria x ananassa HOM05D001583 ORTHO05D007007 4.9e-68 262.3 352 47.7
QL04p096516 Quercus lobata HOM05D000005 ORTHO05D000012 5.5e-67 258.8 227 61.2
Aqoxy3G01853 Aquilegia oxysepala HOM05D005831 ORTHO05D007007 7.9e-66 255.0 342 46.2
Pp3c13_19650 Physcomitrium patens HOM05D005831 ORTHO05D007007 2.5e-64 250.0 284 46.8
MELO3C016909.2 Cucumis melo HOM05D005831 ORTHO05D007007 2.0e-61 240.4 207 60.4
Atru.chr7.1858 Acer truncatum HOM05D005831 ORTHO05D007007 4.6e-58 229.2 204 59.8
HPP92_027843 Vanilla planifolia HOM05D005831 ORTHO05D007007 2.5e-56 223.4 207 57.5
arahy.Tifrunner.gnm1.ann1.VR587A Arachis hypogaea HOM05D005831 ORTHO05D007007 1.8e-54 217.2 346 42.5
arahy.Tifrunner.gnm1.ann1.12X2WP Arachis hypogaea HOM05D005831 ORTHO05D007007 1.9e-51 207.2 319 41.1
TPR.G38878 Trifolium pratense HOM05D005831 ORTHO05D007007 1.6e-50 204.1 211 51.7
Actinidia27570 Actinidia chinensis HOM05D005831 ORTHO05D007007 1.0e-49 201.4 241 46.5
SHI18844 Sapria himalayana HOM05D005831 ORTHO05D007007 2.9e-44 183.3 227 49.3
TPR.G40658 Trifolium pratense HOM05D005831 ORTHO05D007007 2.5e-35 153.7 142 55.6
CBR_g34477 Chara braunii HOM05D005831 ORTHO05D007007 1.3e-31 141.4 340 28.8
CARHR118440 Cardamine hirsuta HOM05D005831 ORTHO05D007007 6.3e-31 139.0 75 96.0
PRCOL_00001676 Prasinoderma coloniale HOM05D005831 ORTHO05D007007 7.7e-29 132.1 250 34.4
SEGI_09079 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 5.5e-27 125.9 145 46.9
AagrBONN_evm.TU.Sc2ySwM_117.3066 Anthoceros agrestis HOM05D005831 ORTHO05D007007 9.4e-27 125.2 133 47.4
Psat0s2173g0120 Pisum sativum HOM05D012210 ORTHO05D007007 7.7e-21 105.5 66 80.3
Cfa027250 Carpinus fangiana HOM05D005831 ORTHO05D007007 2.2e-20 104.0 243 30.9
Cre07.g337050 Chlamydomonas reinhardtii HOM05D005831 ORTHO05D007007 2.1e-18 97.4 345 28.4
MCO12G124 Micromonas commoda HOM05D005831 ORTHO05D007007 2.1e-18 97.4 284 30.3
HPP92_027844 Vanilla planifolia HOM05D005831 ORTHO05D007007 6.8e-17 92.4 79 60.8
Aqoxy5G02406 Aquilegia oxysepala HOM05D005831 ORTHO05D007007 2.8e-15 87.0 220 31.4
RcHm_v2.0_Chr4g0387071 Rosa chinensis HOM05D005831 ORTHO05D007007 2.4e-14 84.0 100 46.0
SEGI_09068 Sequoiadendron giganteum HOM05D005831 ORTHO05D007007 3.1e-14 83.6 60 60.0
arahy.Tifrunner.gnm1.ann1.FV9EQX Arachis hypogaea HOM05D005831 ORTHO05D007007 2.3e-12 77.4 38 89.5
Solyc08g061880.2 Solanum lycopersicum HOM05D005831 ORTHO05D007007 2.8e-10 70.5 51 66.7
QL06p019149 Quercus lobata HOM05D005831 ORTHO05D007007 3.0e-09 67.0 73 49.3
Actinidia28224 Actinidia chinensis HOM05D000290 ORTHO05D007007 4.9e-07 59.7 31 80.6


User provided reference genes

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