Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G26270 Arabidopsis thaliana HOM05D005024 ORTHO05D006396 9.4e-303 1042.7 525 100.0
Sp4g06550 Schrenkiella parvula HOM05D005024 ORTHO05D006396 4.0e-253 877.9 528 84.8
CARHR115110 Cardamine hirsuta HOM05D005024 ORTHO05D006396 4.6e-249 864.4 527 83.9
BcaB06g28091 Brassica carinata HOM05D005024 ORTHO05D006396 1.3e-232 809.7 546 78.4
BcaC02g08288 Brassica carinata HOM05D005024 ORTHO05D006396 1.1e-226 790.0 547 79.2
C04p56010 Brassica napus HOM05D005024 ORTHO05D006396 4.2e-226 788.1 547 79.2
BolC4t27134H Brassica oleracea HOM05D005024 ORTHO05D006396 4.2e-226 788.1 547 79.2
A04p20310 Brassica napus HOM05D005024 ORTHO05D006396 9.3e-226 786.9 546 77.8
BraA04t17610Z Brassica rapa HOM05D005024 ORTHO05D006396 9.3e-226 786.9 546 77.8
Aa31LG5G9530 Aethionema arabicum HOM05D005024 ORTHO05D006396 3.8e-219 765.0 550 74.7
THA.LOC104819895 Tarenaya hassleriana HOM05D005024 ORTHO05D006396 2.6e-196 689.1 528 68.4
Carub.0004s0614 Capsella rubella HOM05D005024 ORTHO05D006396 1.7e-195 686.4 409 87.3
BcaB08g35274 Brassica carinata HOM05D005024 ORTHO05D006396 2.8e-190 669.1 510 72.5
Thhalv10001999m.g Eutrema salsugineum HOM05D005024 ORTHO05D006396 7.9e-185 651.0 408 83.3
Gohir.D07G018500 Gossypium hirsutum HOM05D005024 ORTHO05D006396 1.6e-169 600.1 543 58.9
Gorai.001G019200 Gossypium raimondii HOM05D005024 ORTHO05D006396 6.1e-169 598.2 543 58.7
Gohir.A07G018700 Gossypium hirsutum HOM05D005024 ORTHO05D006396 4.0e-168 595.5 544 58.6
Potri.006G218800 Populus trichocarpa HOM05D005024 ORTHO05D006396 1.1e-167 594.0 543 58.7
Atru.chr7.1825 Acer truncatum HOM05D005024 ORTHO05D006396 3.7e-166 589.0 544 57.7
Ciclev10007934m.g Citrus clementina HOM05D005024 ORTHO05D006396 1.8e-165 586.6 543 57.1
CSS0015942 Camellia sinensis var. sinensis HOM05D005024 ORTHO05D006396 3.5e-164 582.4 548 57.3
Duzib150G0504 Durio zibethinus HOM05D005024 ORTHO05D006396 3.5e-164 582.4 550 57.5
Manes.03G056600 Manihot esculenta HOM05D005024 ORTHO05D006396 4.5e-164 582.0 546 58.1
Duzib168G0917 Durio zibethinus HOM05D005024 ORTHO05D006396 5.9e-164 581.6 550 58.4
Manes.16G087100 Manihot esculenta HOM05D005024 ORTHO05D006396 1.0e-163 580.9 549 57.9
RcHm_v2.0_Chr6g0304801 Rosa chinensis HOM05D005024 ORTHO05D006396 7.2e-162 574.7 541 56.6
Eucgr.C00744 Eucalyptus grandis HOM05D005024 ORTHO05D006396 5.2e-160 568.5 542 56.5
Gohir.A05G037800 Gossypium hirsutum HOM05D005024 ORTHO05D006396 4.4e-159 565.5 547 56.1
Nn8g38600 Nelumbo nucifera HOM05D005024 ORTHO05D006396 1.1e-157 560.8 548 54.4
TWI34G1336 Tripterygium wilfordii HOM05D005024 ORTHO05D006396 1.4e-157 560.5 542 56.5
CiPaw.15G090700 Carya illinoinensis HOM05D005024 ORTHO05D006396 3.1e-157 559.3 509 58.2
MD15G1047400 Malus domestica HOM05D005024 ORTHO05D006396 1.7e-155 553.5 547 56.1
FvH4_2g36960 Fragaria vesca HOM05D005024 ORTHO05D006396 5.0e-155 552.0 541 55.5
PGR142G1044 Punica granatum HOM05D005024 ORTHO05D006396 5.5e-154 548.5 553 54.1
Gorai.009G039800 Gossypium raimondii HOM05D005024 ORTHO05D006396 1.6e-153 547.0 538 55.8
Psat5g034920 Pisum sativum HOM05D005024 ORTHO05D006396 4.7e-153 545.4 535 54.0
arahy.Tifrunner.gnm1.ann1.JR430F Arachis hypogaea HOM05D005024 ORTHO05D006396 3.0e-152 542.7 532 56.0
COL.COLO4_21162 Corchorus olitorius HOM05D005024 ORTHO05D006396 4.0e-152 542.3 550 54.7
Ca_15807_v3 Cicer arietinum L. HOM05D005024 ORTHO05D006396 5.2e-152 542.0 536 54.7
FAN15G2531 Fragaria x ananassa HOM05D005024 ORTHO05D006396 8.8e-152 541.2 589 51.8
Lj1g0011589 Lotus japonicus HOM05D005024 ORTHO05D006396 1.2e-151 540.8 531 55.4
Glyma.06G058100 Glycine max HOM05D005024 ORTHO05D006396 1.3e-150 537.3 535 54.2
arahy.Tifrunner.gnm1.ann1.Q4799Z Arachis hypogaea HOM05D005024 ORTHO05D006396 1.7e-150 537.0 532 55.6
FAN27G2149 Fragaria x ananassa HOM05D005024 ORTHO05D006396 3.7e-150 535.8 578 51.9
TWI63G0562 Tripterygium wilfordii HOM05D005024 ORTHO05D006396 3.7e-150 535.8 497 58.8
VMungo1309G0309 Vigna mungo HOM05D005024 ORTHO05D006396 6.3e-150 535.0 535 54.4
ClCG08G009730 Citrullus lanatus HOM05D005024 ORTHO05D006396 3.1e-149 532.7 563 53.1
MD08G1046400 Malus domestica HOM05D005024 ORTHO05D006396 3.1e-149 532.7 569 53.4
MELO3C011496.2 Cucumis melo HOM05D005024 ORTHO05D006396 7.0e-149 531.6 554 52.2
FAN20G2081 Fragaria x ananassa HOM05D005024 ORTHO05D006396 2.7e-148 529.6 591 51.3
Glyma.04G057500 Glycine max HOM05D005024 ORTHO05D006396 4.5e-148 528.9 506 56.1
Sed0007384 Sechium edule HOM05D005024 ORTHO05D006396 1.7e-147 526.9 587 50.6
Medtr3g105400 Medicago truncatula HOM05D005024 ORTHO05D006396 2.3e-147 526.6 519 54.7
Lalb_Chr08g0244691 Lupinus albus HOM05D005024 ORTHO05D006396 1.1e-146 524.2 492 57.3
Sabra06G0168600 Salix brachista HOM05D005024 ORTHO05D006396 1.0e-144 517.7 561 53.5
Aqoxy4G00037 Aquilegia oxysepala HOM05D005024 ORTHO05D006396 1.8e-144 516.9 496 55.8
Lalb_Chr23g0268051 Lupinus albus HOM05D005024 ORTHO05D006396 5.2e-144 515.4 508 55.1
MSTRG.11771 Avicennia marina HOM05D005024 ORTHO05D006396 1.2e-143 514.2 557 51.9
Gohir.D08G268300 Gossypium hirsutum HOM05D005024 ORTHO05D006396 1.2e-143 514.2 548 52.2
Migut.A00327 Erythranthe guttata HOM05D005024 ORTHO05D006396 1.5e-143 513.8 541 51.8
PSO401G0002 Papaver somniferum HOM05D005024 ORTHO05D006396 1.5e-143 513.8 555 50.3
Gorai.004G286000 Gossypium raimondii HOM05D005024 ORTHO05D006396 2.0e-143 513.5 548 52.2
PSO724G1181 Papaver somniferum HOM05D005024 ORTHO05D006396 4.9e-142 508.8 562 49.5
PSO789G0001 Papaver somniferum HOM05D005024 ORTHO05D006396 4.9e-142 508.8 557 50.1
Cc08_g06760 Coffea canephora HOM05D005024 ORTHO05D006396 8.3e-142 508.1 500 54.6
Dinv41847 Davidia involucrata HOM05D005024 ORTHO05D006396 7.0e-141 505.0 498 56.2
DCAR_001244 Daucus carota HOM05D005024 ORTHO05D006396 1.6e-140 503.8 548 51.1
Phvul.009G083900 Phaseolus vulgaris HOM05D005024 ORTHO05D006396 3.5e-140 502.7 471 57.1
Sc23g0006070 Simmondsia chinensis HOM05D005024 ORTHO05D006396 5.9e-140 501.9 507 52.9
SalBow4G3344 Salvia bowleyana HOM05D005024 ORTHO05D006396 1.0e-139 501.1 589 49.4
GSVIVG01035495001 Vitis vinifera HOM05D005024 ORTHO05D006396 2.3e-139 500.0 445 58.7
Oeu045334.2 Olea europaea HOM05D005024 ORTHO05D006396 7.3e-138 495.0 540 51.9
Gohir.D05G039300 Gossypium hirsutum HOM05D005024 ORTHO05D006396 1.4e-136 490.7 536 52.1
Zm00001eb314080 Zea mays HOM05D005024 ORTHO05D006396 1.2e-135 487.6 551 47.5
Prupe.1G401800 Prunus persica HOM05D005024 ORTHO05D006396 5.8e-135 485.3 542 51.5
Nitab4.5_0004346g0050 Nicotiana tabacum HOM05D005024 ORTHO05D006396 7.5e-135 485.0 548 49.8
Os09g0440200 Oryza sativa ssp. japonica HOM05D005024 ORTHO05D006396 1.1e-133 481.1 551 48.6
HanXRQChr03g0067181 Helianthus annuus HOM05D005024 ORTHO05D006396 7.0e-133 478.4 513 51.1
CsaV3_6G031850 Cucumis sativus L. HOM05D005024 ORTHO05D006396 1.3e-131 474.2 546 50.7
ECA240G2599 Erigeron canadensis HOM05D005024 ORTHO05D006396 8.1e-129 464.9 490 52.2
Nitab4.5_0000508g0040 Nicotiana tabacum HOM05D005024 ORTHO05D006396 5.8e-127 458.8 539 48.4
Sopen08g021170 Solanum pennellii HOM05D005024 ORTHO05D006396 8.6e-123 444.9 451 51.7
Cpa.g.sc82.16 Carica papaya HOM05D005024 ORTHO05D006396 7.3e-122 441.8 413 57.1
Lsat_1_v5_gn_7_59161 Lactuca sativa HOM05D005024 ORTHO05D006396 7.3e-122 441.8 533 48.6
SEGI_27832 Sequoiadendron giganteum HOM05D005024 ORTHO05D006396 1.1e-120 438.0 561 46.0
MSTRG.25847 Avicennia marina HOM05D005024 ORTHO05D006396 3.1e-120 436.4 548 45.3
CiPaw.05G157300 Carya illinoinensis HOM05D005024 ORTHO05D006396 5.2e-120 435.6 547 47.7
Solyc08g067240.4 Solanum lycopersicum HOM05D005024 ORTHO05D006396 5.2e-120 435.6 541 47.0
AT3G43930 Arabidopsis thaliana HOM05D005024 ORTHO05D006396 1.1e-117 427.9 540 47.6
EL10Ac2g02404 Beta vulgaris HOM05D005024 ORTHO05D006396 2.4e-117 426.8 557 42.9
AL5G21960 Arabidopsis lyrata HOM05D005024 ORTHO05D006396 3.6e-113 412.9 562 45.2
MBI19_g09934_MAGBIO Magnolia biondii HOM05D005024 ORTHO05D006396 3.1e-112 409.8 548 45.6
ECA236G2474 Erigeron canadensis HOM05D005024 ORTHO05D006396 2.6e-111 406.8 528 43.9
Gohir.A08G247100 Gossypium hirsutum HOM05D005024 ORTHO05D006396 9.9e-111 404.8 430 51.6
Thecc.09G065700 Theobroma cacao HOM05D005024 ORTHO05D006396 1.7e-110 404.1 394 56.6
THA.LOC104810953 Tarenaya hassleriana HOM05D005024 ORTHO05D006396 8.4e-110 401.7 555 44.7
PGSC0003DMG400007379 Solanum tuberosum HOM05D005024 ORTHO05D006396 1.2e-108 397.9 345 58.0
Thhalv10011063m.g Eutrema salsugineum HOM05D005024 ORTHO05D006396 4.6e-108 396.0 552 45.5
HanXRQChr05g0136401 Helianthus annuus HOM05D005024 ORTHO05D006396 1.7e-107 394.0 569 42.4
ATR0053G058 Amborella trichopoda HOM05D005024 ORTHO05D006396 1.9e-106 390.6 462 48.5
Ah.07g205360 Amaranthus hybridus HOM05D005024 ORTHO05D006396 1.3e-105 387.9 506 46.2
Lj7C207G3 Lonicera japonica HOM05D005024 ORTHO05D006396 4.8e-105 386.0 506 46.4
TAR624G0706 Trochodendron aralioides HOM05D005024 ORTHO05D006396 2.2e-102 377.1 447 50.6
SMO169G0310 Selaginella moellendorffii HOM05D005024 ORTHO05D006396 1.6e-97 360.9 532 40.6
Peaxi162Scf00922g00210 Petunia axillaris HOM05D005024 ORTHO05D006396 1.1e-96 358.2 446 47.3
Pp3c6_19110 Physcomitrium patens HOM05D005024 ORTHO05D006396 1.4e-96 357.8 513 41.5
AagrBONN_evm.TU.Sc2ySwM_228.2412 Anthoceros agrestis HOM05D005024 ORTHO05D006396 2.9e-94 350.1 506 39.5
Pp3c3_23860 Physcomitrium patens HOM05D005024 ORTHO05D006396 1.8e-88 330.9 549 38.3
CBR_g17947 Chara braunii HOM05D005024 ORTHO05D006396 2.2e-86 323.9 590 35.3
Oeu030211.1 Olea europaea HOM05D005024 ORTHO05D006396 8.4e-86 322.0 478 42.1
HPP92_013024 Vanilla planifolia HOM05D005024 ORTHO05D006396 1.9e-85 320.9 427 42.9
SGA_v2.0_scaffold147G36313 Striga asiatica HOM05D005024 ORTHO05D006396 2.5e-82 310.5 482 41.5
CiPaw.05G156800 Carya illinoinensis HOM05D005024 ORTHO05D006396 2.5e-77 293.9 262 60.7
TPR.G31221 Trifolium pratense HOM05D005024 ORTHO05D006396 2.1e-76 290.8 233 65.7
Rhsim06G0092200 Rhododendron simsii HOM05D005024 ORTHO05D006396 2.7e-76 290.4 474 38.6
SHI28014 Sapria himalayana HOM05D005024 ORTHO05D006396 3.3e-74 283.5 400 42.8
Lsat_1_v5_gn_8_70380 Lactuca sativa HOM05D005024 ORTHO05D006396 3.7e-73 280.0 459 39.0
AUR62020277 Chenopodium quinoa HOM05D005024 ORTHO05D006396 1.8e-72 277.7 441 40.4
Haze_18325 Corylus avellana HOM05D005024 ORTHO05D006396 3.2e-69 266.9 436 40.1
AUR62037728 Chenopodium quinoa HOM05D005024 ORTHO05D006396 5.5e-69 266.2 273 50.9
vmacro21130 Vaccinium macrocarpon HOM05D005024 ORTHO05D006396 6.9e-64 249.2 312 45.8
CDE07G0506 Ceratophyllum demersum HOM05D005024 ORTHO05D006396 7.7e-55 219.2 265 45.3
unitig_46.g18535 Utricularia gibba HOM05D005024 ORTHO05D006396 3.6e-52 210.3 351 38.7
Rhsim06G0128300 Rhododendron simsii HOM05D005024 ORTHO05D006396 1.5e-50 204.9 370 36.8
unitig_46.g18534 Utricularia gibba HOM05D005024 ORTHO05D006396 3.4e-42 177.2 147 60.5
Carub.0005s0971 Capsella rubella HOM05D005024 ORTHO05D006396 1.2e-39 168.7 195 48.7
TPR.G3563 Trifolium pratense HOM05D005024 ORTHO05D006396 4.4e-34 150.2 118 60.2
Carub.0004s0613 Capsella rubella HOM05D005024 ORTHO05D006396 8.3e-33 146.0 112 70.5
TPR.G26130 Trifolium pratense HOM05D005024 ORTHO05D006396 9.5e-29 132.5 97 66.0
CAN.G348.11 Capsicum annuum HOM05D005024 ORTHO05D006396 5.2e-27 126.7 295 32.2
SMO336G0001 Selaginella moellendorffii HOM05D005024 ORTHO05D006396 2.0e-23 114.8 215 33.0
AUR62020278 Chenopodium quinoa HOM05D005024 ORTHO05D006396 6.6e-22 109.8 68 69.1
PSO198G0133 Papaver somniferum HOM05D005024 ORTHO05D006396 1.9e-21 108.2 72 72.2
AUR62037727 Chenopodium quinoa HOM05D005024 ORTHO05D006396 5.6e-21 106.7 69 69.6
CBR_g899 Chara braunii HOM05D005024 ORTHO05D006396 3.6e-20 104.0 189 36.0
Cpa.g.sc82.17 Carica papaya HOM05D005024 ORTHO05D006396 4.7e-20 103.6 68 75.0
SHI08483 Sapria himalayana HOM05D005024 ORTHO05D006396 4.4e-18 97.1 213 31.0
GSVIVG01035496001 Vitis vinifera HOM05D005024 ORTHO05D006396 2.0e-15 88.2 56 71.4
ATR0053G014 Amborella trichopoda HOM05D005024 ORTHO05D006396 3.3e-13 80.9 62 66.1
TPR.G26129 Trifolium pratense HOM05D005024 ORTHO05D006396 1.6e-12 78.6 79 57.0
CANSAT25G1503 Cannabis sativa HOM05D001245 ORTHO05D004475 9.9e-10 69.3 162 30.9
PGR042G0290 Punica granatum HOM05D001245 ORTHO05D004475 2.2e-09 68.2 90 37.8
TPR.G30550 Trifolium pratense HOM05D001245 ORTHO05D004475 2.9e-09 67.8 90 37.8
Psat6g040520 Pisum sativum HOM05D001245 ORTHO05D004475 3.7e-09 67.4 90 37.8
AL2G37520 Arabidopsis lyrata HOM05D001245 ORTHO05D004475 1.4e-08 65.5 89 37.1
Glyma.16G005600 Glycine max HOM05D001245 ORTHO05D004475 1.9e-08 65.1 90 35.6
Atru.chr13.1560 Acer truncatum HOM05D001245 ORTHO05D004475 2.4e-08 64.7 91 35.2
Manes.02G168200 Manihot esculenta HOM05D001245 ORTHO05D004475 3.2e-08 64.3 90 35.6
THA.LOC104800232 Tarenaya hassleriana HOM05D001245 ORTHO05D004475 3.2e-08 64.3 89 36.0
THA.LOC104810225 Tarenaya hassleriana HOM05D001245 ORTHO05D004475 3.2e-08 64.3 89 36.0
Migut.N01819 Erythranthe guttata HOM05D001245 ORTHO05D004475 4.1e-08 63.9 141 27.7
Medtr7g090980 Medicago truncatula HOM05D001245 ORTHO05D004475 5.4e-08 63.5 90 35.6
SGA_v2.0_scaffold354G49742 Striga asiatica HOM05D001245 ORTHO05D004475 5.4e-08 63.5 141 29.8
Phvul.002G078200 Phaseolus vulgaris HOM05D001245 ORTHO05D004475 7.1e-08 63.2 90 33.3
CBR_g37446 Chara braunii HOM05D001245 ORTHO05D004475 9.2e-08 62.8 89 33.7
Lj1g0014366 Lotus japonicus HOM05D001245 ORTHO05D004475 9.2e-08 62.8 90 35.6
CANSAT80G2764 Cannabis sativa HOM05D001245 ORTHO05D004475 1.2e-07 62.4 151 28.5
Medtr1g029630 Medicago truncatula HOM05D001245 ORTHO05D004475 1.2e-07 62.4 90 36.7
Oeu009633.1 Olea europaea HOM05D001245 ORTHO05D004475 1.2e-07 62.4 141 29.1
Nn1g08963 Nelumbo nucifera HOM05D001245 ORTHO05D004475 1.6e-07 62.0 90 36.7
Duzib093G0162 Durio zibethinus HOM05D001245 ORTHO05D004475 2.7e-07 61.2 90 33.3
Phvul.001G070600 Phaseolus vulgaris HOM05D001245 ORTHO05D004475 2.7e-07 61.2 138 29.7
FvH4_2g27821 Fragaria vesca HOM05D001245 ORTHO05D004475 3.5e-07 60.8 103 33.0
TWI34G1866 Tripterygium wilfordii HOM05D001245 ORTHO05D004475 3.5e-07 60.8 161 26.7
Thecc.08G132800 Theobroma cacao HOM05D001245 ORTHO05D004475 4.6e-07 60.5 90 33.3
QL09p032547 Quercus lobata HOM05D001245 ORTHO05D004475 6.0e-07 60.1 92 34.8
CSS0013013 Camellia sinensis var. sinensis HOM05D001245 ORTHO05D004475 7.8e-07 59.7 90 35.6
CSS0038833 Camellia sinensis var. sinensis HOM05D001245 ORTHO05D004475 7.8e-07 59.7 90 35.6
Actinidia03424 Actinidia chinensis HOM05D001245 ORTHO05D004475 1.0e-06 59.3 125 32.0
Potri.005G182500 Populus trichocarpa HOM05D001245 ORTHO05D004475 1.0e-06 59.3 90 33.3
PSO170G6194 Papaver somniferum HOM05D001245 ORTHO05D004475 1.3e-06 58.9 90 34.4
Zm00001eb091010 Zea mays HOM05D001245 ORTHO05D004475 1.7e-06 58.5 172 28.5
PSO528G0248 Papaver somniferum HOM05D001245 ORTHO05D004475 2.3e-06 58.2 90 34.4
GSVIVG01008809001 Vitis vinifera HOM05D001245 ORTHO05D004475 2.3e-06 58.2 168 28.0
Aqoxy6G00310 Aquilegia oxysepala HOM05D001245 ORTHO05D004475 3.9e-06 57.4 90 34.4
Ciclev10000159m.g Citrus clementina HOM05D001245 ORTHO05D004475 3.9e-06 57.4 110 30.0


User provided reference genes

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