Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G25730 Arabidopsis thaliana HOM05D004019 ORTHO05D005136 0.0e+00 4862.4 2488 100.0
AL4G17350 Arabidopsis lyrata HOM05D004019 ORTHO05D005136 0.0e+00 4682.9 2488 96.4
Carub.0004s0550 Capsella rubella HOM05D004019 ORTHO05D005136 0.0e+00 4580.0 2498 93.9
CARHR115530 Cardamine hirsuta HOM05D004019 ORTHO05D005136 0.0e+00 4423.6 2498 91.4
Sp4g05330 Schrenkiella parvula HOM05D004019 ORTHO05D005136 0.0e+00 4396.3 2504 90.6
C03p32450 Brassica napus HOM05D004019 ORTHO05D005136 0.0e+00 4247.6 2493 88.4
BolC3t15586H Brassica oleracea HOM05D004019 ORTHO05D005136 0.0e+00 4236.4 2525 87.5
A03p27040 Brassica napus HOM05D004019 ORTHO05D005136 0.0e+00 4233.3 2493 88.2
BraA03t11915Z Brassica rapa HOM05D004019 ORTHO05D005136 0.0e+00 4217.9 2525 87.2
Aa31LG5G9950 Aethionema arabicum HOM05D004019 ORTHO05D005136 0.0e+00 4003.8 2532 82.1
Thhalv10000005m.g Eutrema salsugineum HOM05D004019 ORTHO05D005136 0.0e+00 3988.0 2215 92.4
THA.LOC104803772 Tarenaya hassleriana HOM05D004019 ORTHO05D005136 0.0e+00 3928.3 2525 80.5
Atru.chr7.2305 Acer truncatum HOM05D004019 ORTHO05D005136 0.0e+00 3341.6 2553 69.0
Ciclev10007225m.g Citrus clementina HOM05D004019 ORTHO05D005136 0.0e+00 3332.7 2548 68.5
Prupe.1G464500 Prunus persica HOM05D004019 ORTHO05D005136 0.0e+00 3330.0 2556 68.0
Thecc.09G037700 Theobroma cacao HOM05D004019 ORTHO05D005136 0.0e+00 3320.8 2549 68.5
Gorai.009G053000 Gossypium raimondii HOM05D004019 ORTHO05D005136 0.0e+00 3302.3 2550 67.8
RcHm_v2.0_Chr6g0312581 Rosa chinensis HOM05D004019 ORTHO05D005136 0.0e+00 3301.1 2549 68.3
COL.COLO4_18737 Corchorus olitorius HOM05D004019 ORTHO05D005136 0.0e+00 3297.3 2547 67.7
CiPaw.07G216600 Carya illinoinensis HOM05D004019 ORTHO05D005136 0.0e+00 3295.0 2545 68.5
Dinv14207 Davidia involucrata HOM05D004019 ORTHO05D005136 0.0e+00 3287.3 2544 67.8
FvH4_2g30330 Fragaria vesca HOM05D004019 ORTHO05D005136 0.0e+00 3284.6 2542 68.4
TWI63G0705 Tripterygium wilfordii HOM05D004019 ORTHO05D005136 0.0e+00 3280.7 2555 67.5
Potri.006G244900 Populus trichocarpa HOM05D004019 ORTHO05D005136 0.0e+00 3276.9 2564 67.8
GSVIVG01035749001 Vitis vinifera HOM05D004019 ORTHO05D005136 0.0e+00 3273.4 2516 67.6
FAN24G2881 Fragaria x ananassa HOM05D004019 ORTHO05D005136 0.0e+00 3263.0 2568 67.7
MD15G1113500 Malus domestica HOM05D004019 ORTHO05D005136 0.0e+00 3238.0 2582 66.5
Dinv30236 Davidia involucrata HOM05D004019 ORTHO05D005136 0.0e+00 3234.9 2542 67.3
Lj1g0020850 Lotus japonicus HOM05D004019 ORTHO05D005136 0.0e+00 3217.9 2513 67.0
CANSAT25G1365 Cannabis sativa HOM05D004019 ORTHO05D005136 0.0e+00 3209.5 2560 65.7
Lalb_Chr11g0064021 Lupinus albus HOM05D004019 ORTHO05D005136 0.0e+00 3209.5 2507 67.2
CANSAT56G4370 Cannabis sativa HOM05D004019 ORTHO05D005136 0.0e+00 3197.5 2563 65.4
Sabra06G0191800 Salix brachista HOM05D004019 ORTHO05D005136 0.0e+00 3183.7 2612 65.7
arahy.Tifrunner.gnm1.ann1.WYF2AC Arachis hypogaea HOM05D004019 ORTHO05D005136 0.0e+00 3182.1 2529 66.4
Ca_15687_v3 Cicer arietinum L. HOM05D004019 ORTHO05D005136 0.0e+00 3174.0 2523 66.3
Glyma.06G074700 Glycine max HOM05D004019 ORTHO05D005136 0.0e+00 3170.9 2521 66.6
CSS0034867 Camellia sinensis var. sinensis HOM05D004019 ORTHO05D005136 0.0e+00 3155.9 2547 65.9
Actinidia13300 Actinidia chinensis HOM05D004019 ORTHO05D005136 0.0e+00 3153.6 2516 65.6
Psat5g025600 Pisum sativum HOM05D004019 ORTHO05D005136 0.0e+00 3147.8 2509 65.9
TAR624G1332 Trochodendron aralioides HOM05D004019 ORTHO05D005136 0.0e+00 3140.5 2584 64.5
Medtr3g108360 Medicago truncatula HOM05D004019 ORTHO05D005136 0.0e+00 3120.1 2515 65.3
Nn8g39221 Nelumbo nucifera HOM05D004019 ORTHO05D005136 0.0e+00 3115.5 2545 64.4
arahy.Tifrunner.gnm1.ann1.P4KF2E Arachis hypogaea HOM05D004019 ORTHO05D005136 0.0e+00 3110.9 2518 65.8
TPR.G12417 Trifolium pratense HOM05D004019 ORTHO05D005136 0.0e+00 3108.9 2515 65.2
Eucgr.C01572 Eucalyptus grandis HOM05D004019 ORTHO05D005136 0.0e+00 3107.4 2544 64.3
CsaV3_3G046830 Cucumis sativus L. HOM05D004019 ORTHO05D005136 0.0e+00 3093.9 2555 64.3
Sed0026885 Sechium edule HOM05D004019 ORTHO05D005136 0.0e+00 3079.7 2547 64.0
PGR031G1071 Punica granatum HOM05D004019 ORTHO05D005136 0.0e+00 3059.2 2516 63.9
MSTRG.25887 Avicennia marina HOM05D004019 ORTHO05D005136 0.0e+00 3026.9 2519 63.2
Aqoxy7G01749 Aquilegia oxysepala HOM05D004019 ORTHO05D005136 0.0e+00 3023.8 2543 63.2
Migut.A00257 Erythranthe guttata HOM05D004019 ORTHO05D005136 0.0e+00 3009.6 2526 62.6
HanXRQChr17g0539391 Helianthus annuus HOM05D004019 ORTHO05D005136 0.0e+00 3003.8 2554 62.6
Rhsim02G0185100 Rhododendron simsii HOM05D004019 ORTHO05D005136 0.0e+00 2995.3 2840 58.2
Sopen08g021930 Solanum pennellii HOM05D004019 ORTHO05D005136 0.0e+00 2968.3 2530 61.9
Phvul.009G099400 Phaseolus vulgaris HOM05D004019 ORTHO05D005136 0.0e+00 2960.6 2239 69.1
Sc09g0008920 Simmondsia chinensis HOM05D004019 ORTHO05D005136 0.0e+00 2947.9 2516 62.1
Lsat_1_v5_gn_3_27801 Lactuca sativa HOM05D004019 ORTHO05D005136 0.0e+00 2942.5 2588 61.9
PSO063G5962 Papaver somniferum HOM05D004019 ORTHO05D005136 0.0e+00 2934.4 2560 61.2
PSO782G0289 Papaver somniferum HOM05D004019 ORTHO05D005136 0.0e+00 2928.7 2562 60.9
ECA246G1280 Erigeron canadensis HOM05D004019 ORTHO05D005136 0.0e+00 2897.8 2564 61.3
Cc08_g08140 Coffea canephora HOM05D004019 ORTHO05D005136 0.0e+00 2849.3 2357 63.9
EL10Ac2g02527 Beta vulgaris HOM05D004019 ORTHO05D005136 0.0e+00 2844.7 2526 60.7
AUR62024824 Chenopodium quinoa HOM05D004019 ORTHO05D005136 0.0e+00 2829.7 2522 60.0
ATR1120G055 Amborella trichopoda HOM05D004019 ORTHO05D005136 0.0e+00 2806.9 2542 59.4
AUR62032391 Chenopodium quinoa HOM05D004019 ORTHO05D005136 0.0e+00 2794.2 2526 59.4
MBI03_g19627_MAGBIO Magnolia biondii HOM05D004019 ORTHO05D005136 0.0e+00 2770.3 2414 61.7
Manes.03G064200 Manihot esculenta HOM05D004019 ORTHO05D005136 0.0e+00 2738.8 2086 68.9
SGA_v2.0_scaffold280G46835 Striga asiatica HOM05D004019 ORTHO05D005136 0.0e+00 2625.9 2608 56.4
QL12p030977 Quercus lobata HOM05D004019 ORTHO05D005136 0.0e+00 2573.1 1888 71.9
Lj8C607G10 Lonicera japonica HOM05D004019 ORTHO05D005136 0.0e+00 2552.3 1869 71.2
MELO3C003655.2 Cucumis melo HOM05D004019 ORTHO05D005136 0.0e+00 2540.4 2040 66.6
VMungo1309G1295 Vigna mungo HOM05D004019 ORTHO05D005136 0.0e+00 2380.1 1735 71.7
Gohir.D05G051300 Gossypium hirsutum HOM05D004019 ORTHO05D005136 0.0e+00 2342.8 1642 74.0
Zm00001eb161040 Zea mays HOM05D004019 ORTHO05D005136 0.0e+00 2251.1 2283 55.0
FAN20G0521 Fragaria x ananassa HOM05D004019 ORTHO05D005136 0.0e+00 2197.5 1837 64.3
Gohir.A05G049400 Gossypium hirsutum HOM05D004019 ORTHO05D005136 0.0e+00 2108.2 1741 64.4
Pp3c19_2530 Physcomitrium patens HOM05D004019 ORTHO05D005136 0.0e+00 2025.0 2704 45.8
DCAR_006256 Daucus carota HOM05D004019 ORTHO05D005136 0.0e+00 2024.6 1775 62.4
Oeu063261.5 Olea europaea HOM05D004019 ORTHO05D005136 0.0e+00 2020.7 1729 63.3
Mapoly0049s0060 Marchantia polymorpha HOM05D004019 ORTHO05D005136 0.0e+00 1921.7 2767 42.9
unitig_747.g21875 Utricularia gibba HOM05D004019 ORTHO05D005136 0.0e+00 1887.5 1689 59.9
SMO172G0089 Selaginella moellendorffii HOM05D004019 ORTHO05D005136 0.0e+00 1584.3 2527 40.8
Ah.12g060340 Amaranthus hybridus HOM05D004019 ORTHO05D005136 0.0e+00 1573.9 1415 61.6
Hma1.2p1_0140F.1_g063760 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 0.0e+00 1554.3 1187 68.7
Cpa.g.sc205.26 Carica papaya HOM05D004019 ORTHO05D005136 0.0e+00 1540.0 1099 73.9
Hma1.2p1_0140F.1_g063770 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 0.0e+00 1531.9 1178 69.4
Solyc08g068010.2 Solanum lycopersicum HOM05D004019 ORTHO05D005136 0.0e+00 1529.6 1146 69.9
CBR_g31401 Chara braunii HOM05D004019 ORTHO05D005136 0.0e+00 1441.8 2621 37.5
Peaxi162Scf00105g00818 Petunia axillaris HOM05D004019 ORTHO05D005136 0.0e+00 1416.0 1144 67.0
AagrBONN_evm.TU.Sc2ySwM_340.130 Anthoceros agrestis HOM05D004019 ORTHO05D005136 0.0e+00 1380.5 2654 35.6
vmacro08818 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 0.0e+00 1362.4 1153 64.4
Nitab4.5_0000250g0110 Nicotiana tabacum HOM05D004019 ORTHO05D005136 0.0e+00 1359.4 1493 51.8
CDE10G0881 Ceratophyllum demersum HOM05D004019 ORTHO05D005136 0.0e+00 1331.6 1600 48.1
SEGI_05898 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 0.0e+00 1266.5 1185 58.8
FAN20G1524 Fragaria x ananassa HOM05D004019 ORTHO05D005136 0.0e+00 1256.5 855 75.1
HPP92_006443 Vanilla planifolia HOM05D004019 ORTHO05D005136 0.0e+00 1238.8 1172 58.7
Nitab4.5_0002393g0030 Nicotiana tabacum HOM05D004019 ORTHO05D005136 0.0e+00 1209.5 1476 48.0
CDE10G0547 Ceratophyllum demersum HOM05D004019 ORTHO05D005136 0.0e+00 1133.2 901 64.8
Gohir.A05G049350 Gossypium hirsutum HOM05D004019 ORTHO05D005136 0.0e+00 1108.2 745 75.6
HPP92_006442 Vanilla planifolia HOM05D004019 ORTHO05D005136 3.2e-276 956.8 1106 49.5
Haze_21654 Corylus avellana HOM05D004019 ORTHO05D005136 4.5e-262 909.8 614 78.0
vmacro11105 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 3.7e-256 890.2 673 68.6
SHI11646 Sapria himalayana HOM05D004019 ORTHO05D000023 4.5e-246 856.7 1047 48.9
vmacro11102 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 4.5e-246 856.7 1010 49.1
Haze_21655 Corylus avellana HOM05D004019 ORTHO05D005136 8.5e-229 799.3 638 67.4
Haze_21656 Corylus avellana HOM05D004019 ORTHO05D005136 1.5e-228 798.5 908 49.3
Ah.12g060350 Amaranthus hybridus HOM05D004019 ORTHO05D005136 4.9e-208 730.3 881 46.9
QL12p030952 Quercus lobata HOM05D004019 ORTHO05D005136 3.0e-197 694.5 740 52.0
SHI11647 Sapria himalayana HOM05D004019 ORTHO05D005136 8.9e-194 682.9 827 47.8
Cpa.g.sc205.24 Carica papaya HOM05D004019 ORTHO05D005136 4.4e-185 654.1 495 69.3
Nitab4.5_0000250g0120 Nicotiana tabacum HOM05D004019 ORTHO05D005136 8.1e-179 633.3 843 48.5
ClCG05G017320 Citrullus lanatus HOM05D004019 ORTHO05D005136 6.9e-178 630.2 686 50.3
Solyc08g068040.3 Solanum lycopersicum HOM05D004019 ORTHO05D005136 1.7e-173 615.5 659 49.6
Peaxi162Scf00105g00812 Petunia axillaris HOM05D004019 ORTHO05D005136 1.1e-172 612.8 649 49.3
Cpa.g.sc205.19 Carica papaya HOM05D004019 ORTHO05D005136 6.2e-163 580.5 491 61.3
Hund02996 Selenicereus undatus HOM05D004019 ORTHO05D005136 2.9e-160 571.6 617 55.6
Peaxi162Scf00105g00817 Petunia axillaris HOM05D004019 ORTHO05D005136 3.7e-155 554.7 491 59.9
Nitab4.5_0002393g0010 Nicotiana tabacum HOM05D004019 ORTHO05D005136 5.0e-152 544.3 385 69.4
DCAR_006255 Daucus carota HOM05D004019 ORTHO05D005136 3.6e-142 511.5 499 56.7
vmacro11103 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 2.6e-132 478.8 547 51.2
SalBow4G2655 Salvia bowleyana HOM05D004019 ORTHO05D005136 3.4e-116 425.2 492 47.2
SEGI_01785 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 9.4e-111 407.1 513 44.1
Os01g0593000 Oryza sativa ssp. japonica HOM05D004019 ORTHO05D005136 6.1e-102 377.9 264 70.1
vmacro11104 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 4.6e-97 361.7 239 78.2
unitig_747.g21874 Utricularia gibba HOM05D004019 ORTHO05D005136 1.5e-84 320.1 346 50.3
Nitab4.5_0000250g0090 Nicotiana tabacum HOM05D004019 ORTHO05D005136 3.2e-82 312.4 180 84.4
vmacro11106 Vaccinium macrocarpon HOM05D005362 ORTHO05D006895 9.9e-76 290.8 228 65.4
Ah.12g060330 Amaranthus hybridus HOM05D004019 ORTHO05D005136 1.1e-74 287.3 180 75.6
Hma1.2p1_0140F.1_g063780 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 1.0e-72 280.8 205 75.1
Cfa013229 Carpinus fangiana HOM05D004019 ORTHO05D005136 7.3e-71 274.6 216 63.9
Haze_21653 Corylus avellana HOM05D004019 ORTHO05D005136 1.8e-69 270.0 210 64.8
SEGI_29718 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 1.2e-68 267.3 158 79.7
DCAR_006257 Daucus carota HOM05D004019 ORTHO05D005136 1.5e-68 266.9 151 86.8
Cpa.g.sc205.16 Carica papaya HOM05D004019 ORTHO05D005136 1.7e-67 263.5 322 47.2
SHI11644 Sapria himalayana HOM05D004019 ORTHO05D000014 8.4e-59 234.6 301 48.5
Cc08_g08730 Coffea canephora HOM05D000021 ORTHO05D000010 6.2e-54 218.4 287 45.3
DCAR_006254 Daucus carota HOM05D004019 ORTHO05D005136 1.5e-52 213.8 285 45.3
Cc00_g31360 Coffea canephora HOM05D004019 ORTHO05D005136 8.7e-48 198.0 310 40.0
PRCOL_00001920 Prasinoderma coloniale HOM05D004019 ORTHO05D005136 3.7e-46 192.6 1961 23.0
unitig_747.g21873 Utricularia gibba HOM05D004019 ORTHO05D005136 2.0e-44 186.8 286 39.9
SHI11640 Sapria himalayana HOM05D004019 ORTHO05D000023 8.7e-40 171.4 173 50.3
Nitab4.5_0000250g0100 Nicotiana tabacum HOM05D004019 ORTHO05D005136 3.3e-39 169.5 338 32.5
HanXRQChr03g0075941 Helianthus annuus HOM05D004019 ORTHO05D005136 4.5e-36 159.1 105 75.2
Hma1.2p1_0140F.1_g063800 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 3.6e-33 149.4 115 67.0
PGR042G0250 Punica granatum HOM05D004019 ORTHO05D005136 3.1e-29 136.3 141 46.8
AUR62038490 Chenopodium quinoa HOM05D004019 ORTHO05D005136 1.5e-28 134.0 117 66.7
Solyc08g068030.1 Solanum lycopersicum HOM05D004019 ORTHO05D005136 5.5e-26 125.6 143 48.3
MD00G1060000 Malus domestica HOM05D004019 ORTHO05D005136 1.1e-21 111.3 94 67.0
MD08G1211900 Malus domestica HOM05D004019 ORTHO05D005136 1.1e-21 111.3 94 67.0
Prupe.5G099400 Prunus persica HOM05D004019 ORTHO05D005136 1.1e-21 111.3 95 61.1
Oeu022768.1 Olea europaea HOM05D004019 ORTHO05D005136 1.7e-19 104.0 121 46.3
Lsat_1_v5_gn_4_165520 Lactuca sativa HOM05D004019 ORTHO05D005136 3.2e-18 99.8 121 44.6
Medtr3g108370 Medicago truncatula HOM05D004019 ORTHO05D005136 4.7e-17 95.9 181 38.1
Prupe.5G112400 Prunus persica HOM05D004019 ORTHO05D005136 6.7e-16 92.0 117 45.3
Actinidia14324 Actinidia chinensis HOM05D004019 ORTHO05D005136 1.5e-15 90.9 130 49.2
SHI11643 Sapria himalayana HOM05D004019 ORTHO05D035247 2.6e-15 90.1 81 58.0
FvH4_2g30290 Fragaria vesca HOM05D004019 ORTHO05D035247 1.3e-14 87.8 88 56.8
FAN24G2522 Fragaria x ananassa HOM05D004019 ORTHO05D035247 1.3e-14 87.8 88 56.8
Hund02993 Selenicereus undatus HOM05D004019 ORTHO05D000004 1.4e-13 84.3 75 57.3
TPR.G12424 Trifolium pratense HOM05D004019 ORTHO05D005136 1.4e-13 84.3 88 51.1
Cc08_g08790 Coffea canephora HOM05D004019 ORTHO05D005136 2.4e-13 83.6 58 70.7
Haze_21651 Corylus avellana HOM05D004019 ORTHO05D005136 4.1e-13 82.8 68 64.7
Cc00_g28950 Coffea canephora HOM05D004019 ORTHO05D005136 9.1e-13 81.6 58 72.4
Cpa.g.sc205.23 Carica papaya HOM05D004019 ORTHO05D005136 2.2e-11 77.0 73 56.2
Medtr3g107940 Medicago truncatula HOM05D004019 ORTHO05D000015 6.5e-11 75.5 91 50.5
Actinidia36698 Actinidia chinensis HOM05D004019 ORTHO05D005136 1.1e-10 74.7 123 48.0
Actinidia31247 Actinidia chinensis HOM05D004019 ORTHO05D005136 1.2e-09 71.2 74 59.5
Actinidia23592 Actinidia chinensis HOM05D004019 ORTHO05D005136 1.6e-09 70.9 79 60.8
Medtr3g109982 Medicago truncatula HOM05D000051 ORTHO05D000015 1.6e-09 70.9 200 31.0
Glyma.04G073626 Glycine max HOM05D004019 ORTHO05D005136 7.5e-07 62.0 50 62.0
FvH4_2g30421 Fragaria vesca HOM05D004019 ORTHO05D035788 9.7e-07 61.6 58 48.3
Hund02997 Selenicereus undatus HOM05D004019 ORTHO05D005136 2.2e-06 60.5 47 63.8
TPR.G26502 Trifolium pratense HOM05D000051 ORTHO05D000015 2.2e-06 60.5 135 36.3
Psat5g042320 Pisum sativum HOM05D000051 ORTHO05D000015 6.3e-06 58.9 82 43.9


User provided reference genes

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