Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G25625 Arabidopsis thaliana HOM05D007454 ORTHO05D009382 6.9e-81 303.9 153 100.0
AL4G17110 Arabidopsis lyrata HOM05D007454 ORTHO05D009382 1.8e-73 279.3 153 90.8
CARHR115660 Cardamine hirsuta HOM05D007454 ORTHO05D009382 3.2e-62 241.9 153 79.7
Sp4g05200 Schrenkiella parvula HOM05D007454 ORTHO05D009382 7.5e-59 230.7 153 78.4
Carub.0004s0541 Capsella rubella HOM05D007454 ORTHO05D009382 6.3e-58 227.6 154 80.5
Thhalv10000347m.g Eutrema salsugineum HOM05D007454 ORTHO05D009382 4.5e-56 221.5 153 77.1
BcaB06g28081 Brassica carinata HOM05D007454 ORTHO05D009382 1.9e-54 216.1 153 72.5
A04p19830 Brassica napus HOM05D007454 ORTHO05D009382 2.5e-54 215.7 153 73.2
BraA04t17571Z Brassica rapa HOM05D007454 ORTHO05D009382 2.5e-54 215.7 153 73.2
BcaC02g08336 Brassica carinata HOM05D007454 ORTHO05D009382 1.4e-52 209.9 153 71.9
C04p55570 Brassica napus HOM05D007454 ORTHO05D009382 1.4e-52 209.9 153 71.9
BolC4t27081H Brassica oleracea HOM05D007454 ORTHO05D009382 1.4e-52 209.9 153 71.9
Aa31LG1G8530 Aethionema arabicum HOM05D007454 ORTHO05D009382 1.2e-29 133.7 164 50.6
THA.LOC104803822 Tarenaya hassleriana HOM05D007454 ORTHO05D009382 3.4e-27 125.6 158 49.4
Sabra06G0194300 Salix brachista HOM05D007454 ORTHO05D009382 3.1e-20 102.4 157 44.6
CSS0001844 Camellia sinensis var. sinensis HOM05D007454 ORTHO05D009382 2.0e-19 99.8 157 42.0
CiPaw.08G014500 Carya illinoinensis HOM05D007454 ORTHO05D009382 7.5e-19 97.8 167 38.3
Thecc.09G146500 Theobroma cacao HOM05D007454 ORTHO05D009382 1.7e-18 96.7 153 40.5
Duzib150G0674 Durio zibethinus HOM05D007454 ORTHO05D009382 2.2e-18 96.3 103 53.4
Gohir.A11G304800 Gossypium hirsutum HOM05D007454 ORTHO05D009382 4.9e-18 95.1 154 39.6
Prupe.1G471000 Prunus persica HOM05D007454 ORTHO05D009382 8.3e-18 94.4 148 40.5
Gorai.007G350400 Gossypium raimondii HOM05D007454 ORTHO05D009382 1.4e-17 93.6 153 38.6
Potri.006G248300 Populus trichocarpa HOM05D007454 ORTHO05D009382 4.1e-17 92.0 158 41.8
Cc11_g01380 Coffea canephora HOM05D007454 ORTHO05D009382 1.2e-16 90.5 160 41.2
Haze_21608 Corylus avellana HOM05D007454 ORTHO05D009382 2.1e-16 89.7 156 42.9
Gohir.D11G320200 Gossypium hirsutum HOM05D007454 ORTHO05D009382 2.7e-16 89.4 153 38.6
QL12p031592 Quercus lobata HOM05D007454 ORTHO05D009382 2.7e-16 89.4 158 39.9
FvH4_2g29860 Fragaria vesca HOM05D007454 ORTHO05D009382 7.8e-16 87.8 152 41.4
FAN20G1122 Fragaria x ananassa HOM05D007454 ORTHO05D009382 1.3e-15 87.0 151 39.7
Rhsim02G0189300 Rhododendron simsii HOM05D007454 ORTHO05D009382 2.3e-15 86.3 153 37.9
RcHm_v2.0_Chr6g0298931 Rosa chinensis HOM05D007454 ORTHO05D009382 3.0e-15 85.9 153 41.8
TAR383G0100 Trochodendron aralioides HOM05D007454 ORTHO05D009382 3.0e-15 85.9 153 39.2
VMungo1309G0733 Vigna mungo HOM05D007454 ORTHO05D009382 3.0e-15 85.9 125 43.2
MD08G1140700 Malus domestica HOM05D007454 ORTHO05D009382 3.9e-15 85.5 148 36.5
FAN27G1093 Fragaria x ananassa HOM05D007454 ORTHO05D009382 5.1e-15 85.1 151 39.1
Atru.chr7.2345 Acer truncatum HOM05D007454 ORTHO05D009382 6.6e-15 84.7 160 38.8
EL10Ac2g02557 Beta vulgaris HOM05D007454 ORTHO05D009382 6.6e-15 84.7 155 37.4
Cfa013203 Carpinus fangiana HOM05D007454 ORTHO05D009382 6.6e-15 84.7 151 42.4
CiPaw.07G219000 Carya illinoinensis HOM05D007454 ORTHO05D009382 6.6e-15 84.7 157 34.4
Ciclev10009811m.g Citrus clementina HOM05D007454 ORTHO05D009382 6.6e-15 84.7 161 42.2
COL.COLO4_24027 Corchorus olitorius HOM05D007454 ORTHO05D009382 6.6e-15 84.7 158 43.0
FAN24G1693 Fragaria x ananassa HOM05D007454 ORTHO05D009382 6.6e-15 84.7 153 42.5
Migut.A00288 Erythranthe guttata HOM05D007454 ORTHO05D009382 1.1e-14 84.0 155 41.9
FAN15G1931 Fragaria x ananassa HOM05D007454 ORTHO05D009382 1.1e-14 84.0 151 39.1
Cpa.g.sc603.1 Carica papaya HOM05D007454 ORTHO05D009382 1.5e-14 83.6 126 42.1
Glyma.06G072000 Glycine max HOM05D007454 ORTHO05D009382 1.5e-14 83.6 156 40.4
MD15G1117600 Malus domestica HOM05D007454 ORTHO05D009382 1.9e-14 83.2 151 37.1
Actinidia29311 Actinidia chinensis HOM05D007454 ORTHO05D009382 2.5e-14 82.8 153 38.6
Lalb_Chr23g0268861 Lupinus albus HOM05D007454 ORTHO05D009382 2.5e-14 82.8 163 35.0
Glyma.04G070000 Glycine max HOM05D007454 ORTHO05D009382 9.5e-14 80.9 154 35.7
Phvul.009G096400 Phaseolus vulgaris HOM05D007454 ORTHO05D009382 1.2e-13 80.5 156 36.5
TWI34G0809 Tripterygium wilfordii HOM05D007454 ORTHO05D009382 1.2e-13 80.5 156 38.5
Actinidia13275 Actinidia chinensis HOM05D007454 ORTHO05D009382 3.6e-13 79.0 153 39.2
arahy.Tifrunner.gnm1.ann1.X4UCF1 Arachis hypogaea HOM05D007454 ORTHO05D009382 3.6e-13 79.0 156 35.3
Nitab4.5_0003201g0010 Nicotiana tabacum HOM05D007454 ORTHO05D009382 4.7e-13 78.6 153 35.9
arahy.Tifrunner.gnm1.ann1.AC8RV3 Arachis hypogaea HOM05D007454 ORTHO05D009382 1.1e-12 77.4 156 33.3
SalBow4G3079 Salvia bowleyana HOM05D007454 ORTHO05D009382 1.1e-12 77.4 74 54.1
Medtr3g107890 Medicago truncatula HOM05D007454 ORTHO05D009382 1.4e-12 77.0 163 39.3
Nitab4.5_0000125g0360 Nicotiana tabacum HOM05D007454 ORTHO05D009382 1.4e-12 77.0 153 34.0
Eucgr.C01807 Eucalyptus grandis HOM05D007454 ORTHO05D009382 1.8e-12 76.6 161 35.4
TPR.G27330 Trifolium pratense HOM05D007454 ORTHO05D009382 1.8e-12 76.6 174 35.1
Solyc08g067630.3 Solanum lycopersicum HOM05D007454 ORTHO05D009382 5.2e-12 75.1 161 39.8
Nn2g11862 Nelumbo nucifera HOM05D007454 ORTHO05D009382 8.9e-12 74.3 169 36.7
Manes.16G117700 Manihot esculenta HOM05D007454 ORTHO05D009382 2.0e-11 73.2 160 35.6
Manes.03G018900 Manihot esculenta HOM05D007454 ORTHO05D009382 2.6e-11 72.8 162 35.2
Hund25693 Selenicereus undatus HOM05D007454 ORTHO05D009382 2.6e-11 72.8 156 34.6
CAN.G506.13 Capsicum annuum HOM05D007454 ORTHO05D009382 3.4e-11 72.4 157 34.4
Dinv11595 Davidia involucrata HOM05D007454 ORTHO05D009382 5.8e-11 71.6 117 39.3
unitig_748.g8205 Utricularia gibba HOM05D007454 ORTHO05D009382 9.9e-11 70.9 147 35.4
Lj1g0018180 Lotus japonicus HOM05D007454 ORTHO05D009382 1.7e-10 70.1 167 34.7
Sc09g0008740 Simmondsia chinensis HOM05D007454 ORTHO05D009382 1.7e-10 70.1 154 33.8
Lsat_1_v5_gn_1_45380 Lactuca sativa HOM05D007454 ORTHO05D009382 2.9e-10 69.3 154 37.7
ECA248G0251 Erigeron canadensis HOM05D007454 ORTHO05D009382 4.9e-10 68.6 155 36.8
Oeu032495.1 Olea europaea HOM05D007454 ORTHO05D009382 4.9e-10 68.6 154 35.7
PGSC0003DMG400002261 Solanum tuberosum HOM05D007454 ORTHO05D009382 4.9e-10 68.6 161 36.0
CANSAT11G0218 Cannabis sativa HOM05D007454 ORTHO05D009382 8.4e-10 67.8 170 37.1
Sed0003243 Sechium edule HOM05D007454 ORTHO05D009382 8.4e-10 67.8 161 34.2
Zm00001eb296620 Zea mays HOM05D007454 ORTHO05D009382 1.4e-09 67.0 117 37.6
CDE06G2386 Ceratophyllum demersum HOM05D007454 ORTHO05D009382 1.9e-09 66.6 126 38.9
HanXRQChr01g0030031 Helianthus annuus HOM05D007454 ORTHO05D009382 3.2e-09 65.9 132 39.4
TAR626G1515 Trochodendron aralioides HOM05D007454 ORTHO05D009382 4.1e-09 65.5 155 36.1
PSO017G6963 Papaver somniferum HOM05D007454 ORTHO05D009382 5.4e-09 65.1 63 55.6
Ca_15708_v3 Cicer arietinum L. HOM05D007454 ORTHO05D009382 7.1e-09 64.7 64 46.9
ClCG05G017140 Citrullus lanatus HOM05D007454 ORTHO05D009382 7.1e-09 64.7 164 36.0
MELO3C011223.2 Cucumis melo HOM05D007454 ORTHO05D009382 7.1e-09 64.7 104 43.3
Aqoxy7G01923 Aquilegia oxysepala HOM05D007454 ORTHO05D009382 9.2e-09 64.3 108 35.2
CDE07G1568 Ceratophyllum demersum HOM05D007454 ORTHO05D009382 9.2e-09 64.3 118 38.1
Os05g0575000 Oryza sativa ssp. japonica HOM05D007454 ORTHO05D009382 9.2e-09 64.3 72 50.0
Sopen08g021580 Solanum pennellii HOM05D007454 ORTHO05D009382 9.2e-09 64.3 65 52.3
PSO170G5517 Papaver somniferum HOM05D007454 ORTHO05D009382 1.6e-08 63.5 67 52.2
ClCG08G012990 Citrullus lanatus HOM05D007454 ORTHO05D009382 2.1e-08 63.2 161 33.5
CsaV3_2G031720 Cucumis sativus L. HOM05D007454 ORTHO05D009382 3.5e-08 62.4 59 52.5
CsaV3_3G046620 Cucumis sativus L. HOM05D007454 ORTHO05D009382 3.5e-08 62.4 170 35.9
DCAR_001472 Daucus carota HOM05D007454 ORTHO05D009382 4.6e-08 62.0 153 32.7
TPR.G34694 Trifolium pratense HOM05D007454 ORTHO05D009382 4.6e-08 62.0 149 34.2
Psat5g027000 Pisum sativum HOM05D007454 ORTHO05D009382 6.0e-08 61.6 65 49.2
MELO3C003676.2 Cucumis melo HOM05D007454 ORTHO05D009382 1.0e-07 60.8 114 41.2
Sed0012550 Sechium edule HOM05D007454 ORTHO05D009382 3.0e-07 59.3 159 32.1
CDE06G2168 Ceratophyllum demersum HOM05D007454 ORTHO05D009382 5.1e-07 58.5 82 42.7
Sed0011711 Sechium edule HOM05D007454 ORTHO05D009382 8.6e-07 57.8 135 36.3
MBI01_g03566_MAGBIO Magnolia biondii HOM05D007454 ORTHO05D009382 2.5e-06 56.2 60 51.7


User provided reference genes

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