Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G25310 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 2.1e-112 409.1 211 100.0
AL4G16690 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 4.5e-107 391.3 210 95.2
Carub.0004s0494 Capsella rubella HOM05D005054 ORTHO05D005948 1.6e-104 382.9 209 93.3
Sp4g04450 Schrenkiella parvula HOM05D005054 ORTHO05D005948 6.8e-103 377.5 209 91.9
A09p55700 Brassica napus HOM05D005054 ORTHO05D005948 5.4e-100 367.9 209 90.0
BraA09t40971Z Brassica rapa HOM05D005054 ORTHO05D005948 7.0e-100 367.5 209 90.0
CARHR116210 Cardamine hirsuta HOM05D005054 ORTHO05D005948 4.6e-99 364.8 202 92.1
BcaC07g40871 Brassica carinata HOM05D005054 ORTHO05D005948 3.0e-98 362.1 209 88.5
BcaB08g35175 Brassica carinata HOM05D005054 ORTHO05D005948 4.3e-97 358.2 209 88.5
Thhalv10000323m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 1.2e-96 356.7 211 88.2
BolC8t51440H Brassica oleracea HOM05D005054 ORTHO05D005948 2.8e-96 355.5 215 86.0
C08p38700 Brassica napus HOM05D005054 ORTHO05D005948 6.2e-96 354.4 215 85.6
THA.LOC104803846 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 3.0e-90 335.5 200 85.0
Sp7g29920 Schrenkiella parvula HOM05D005054 ORTHO05D005948 2.8e-88 328.9 204 80.4
AT4G32130 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 3.6e-88 328.6 204 81.9
BcaC09g52000 Brassica carinata HOM05D005054 ORTHO05D005948 4.7e-88 328.2 204 78.9
BcaNung03140 Brassica carinata HOM05D005054 ORTHO05D005948 2.3e-87 325.9 204 79.9
Carub.0007s0843 Capsella rubella HOM05D005054 ORTHO05D005948 2.3e-87 325.9 205 81.5
THA.LOC104803647 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 2.3e-87 325.9 209 80.4
Thhalv10026275m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 4.0e-87 325.1 204 81.4
AL7G19730 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 5.2e-87 324.7 207 82.1
BolC1t00678H Brassica oleracea HOM05D005054 ORTHO05D005948 1.2e-86 323.6 208 77.9
CARHR240040 Cardamine hirsuta HOM05D005054 ORTHO05D005948 8.6e-82 307.4 185 84.3
BraA01t00585Z Brassica rapa HOM05D005054 ORTHO05D005948 8.9e-79 297.4 176 82.4
TWI32G1290 Tripterygium wilfordii HOM05D005054 ORTHO05D005948 3.8e-77 292.0 211 72.0
GSVIVG01035953001 Vitis vinifera HOM05D005054 ORTHO05D005948 3.8e-77 292.0 211 70.6
Dinv18198 Davidia involucrata HOM05D005054 ORTHO05D005948 1.4e-76 290.0 210 71.4
Cpa.g.sc187.3 Carica papaya HOM05D005054 ORTHO05D005948 1.9e-76 289.7 207 72.0
MD08G1157200 Malus domestica HOM05D005054 ORTHO05D005948 2.4e-76 289.3 212 70.3
Potri.018G024600 Populus trichocarpa HOM05D005054 ORTHO05D005948 9.3e-76 287.3 210 71.0
MD15G1128300 Malus domestica HOM05D005054 ORTHO05D005948 2.7e-75 285.8 205 70.7
Haze_21489 Corylus avellana HOM05D005054 ORTHO05D005948 4.6e-75 285.0 206 70.9
CsaV3_3G046210 Cucumis sativus L. HOM05D005054 ORTHO05D005948 1.3e-74 283.5 205 71.2
Phvul.009G091300 Phaseolus vulgaris HOM05D005054 ORTHO05D005948 1.3e-74 283.5 203 71.4
Aqoxy7G03608 Aquilegia oxysepala HOM05D005054 ORTHO05D005948 1.7e-74 283.1 195 72.8
MELO3C003718.2 Cucumis melo HOM05D005054 ORTHO05D005948 2.3e-74 282.7 205 70.7
CANSAT78G0154 Cannabis sativa HOM05D005054 ORTHO05D005948 3.9e-74 282.0 210 69.0
Prupe.1G483600 Prunus persica HOM05D005054 ORTHO05D005948 6.6e-74 281.2 204 70.6
Sed0027504 Sechium edule HOM05D005054 ORTHO05D005948 8.7e-74 280.8 205 67.8
Glyma.06G066400 Glycine max HOM05D005054 ORTHO05D005948 1.1e-73 280.4 200 71.5
Medtr3g106570 Medicago truncatula HOM05D005054 ORTHO05D005948 1.1e-73 280.4 201 73.1
Potri.006G257100 Populus trichocarpa HOM05D005054 ORTHO05D005948 1.1e-73 280.4 212 68.4
TPR.G3145 Trifolium pratense HOM05D005054 ORTHO05D005948 1.1e-73 280.4 198 73.7
VMungo1309G0253 Vigna mungo HOM05D005054 ORTHO05D005948 1.5e-73 280.0 203 70.0
arahy.Tifrunner.gnm1.ann1.NJ6IKW Arachis hypogaea HOM05D005054 ORTHO05D005948 1.9e-73 279.6 208 72.6
Lalb_Chr23g0268431 Lupinus albus HOM05D005054 ORTHO05D005948 2.5e-73 279.3 208 71.2
Sed0004415 Sechium edule HOM05D005054 ORTHO05D005948 2.5e-73 279.3 208 67.3
Glyma.04G065200 Glycine max HOM05D005054 ORTHO05D005948 3.3e-73 278.9 200 71.0
CiPaw.07G225400 Carya illinoinensis HOM05D005054 ORTHO05D005948 7.3e-73 277.7 204 68.6
ClCG05G016710 Citrullus lanatus HOM05D005054 ORTHO05D005948 2.1e-72 276.2 205 69.3
Solyc08g041980.3 Solanum lycopersicum HOM05D005054 ORTHO05D005948 3.6e-72 275.4 198 72.2
Sc06g0000550 Simmondsia chinensis HOM05D005054 ORTHO05D005948 4.8e-72 275.0 207 69.1
Sopen08g012360 Solanum pennellii HOM05D005054 ORTHO05D005948 4.8e-72 275.0 187 75.4
Thecc.09G021500 Theobroma cacao HOM05D005054 ORTHO05D005948 4.8e-72 275.0 208 70.2
Ca_15755_v3 Cicer arietinum L. HOM05D005054 ORTHO05D005948 8.1e-72 274.2 203 70.4
Actinidia14591 Actinidia chinensis HOM05D005054 ORTHO05D005948 1.1e-71 273.9 201 69.7
Lalb_Chr08g0244231 Lupinus albus HOM05D005054 ORTHO05D005948 1.1e-71 273.9 200 72.0
Manes.16G124300 Manihot esculenta HOM05D005054 ORTHO05D005948 2.4e-71 272.7 206 68.9
CiPaw.08G009700 Carya illinoinensis HOM05D005054 ORTHO05D005948 4.0e-71 271.9 206 68.9
Manes.03G012900 Manihot esculenta HOM05D005054 ORTHO05D005948 4.0e-71 271.9 206 68.0
HanXRQChr02g0050341 Helianthus annuus HOM05D005054 ORTHO05D005948 5.3e-71 271.6 205 68.3
Sabra18G0027000 Salix brachista HOM05D002641 ORTHO05D001537 1.2e-70 270.4 226 65.5
Ciclev10009464m.g Citrus clementina HOM05D005054 ORTHO05D005948 2.0e-70 269.6 212 67.0
Nn2g12158 Nelumbo nucifera HOM05D005054 ORTHO05D005948 2.0e-70 269.6 194 68.0
CAN.G9.14 Capsicum annuum HOM05D005054 ORTHO05D005948 3.4e-70 268.9 197 71.1
Lj1g0015588 Lotus japonicus HOM05D005054 ORTHO05D005948 3.4e-70 268.9 203 68.5
CSS0024153 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 5.8e-70 268.1 209 67.0
Eucgr.C02743 Eucalyptus grandis HOM05D005054 ORTHO05D005948 5.8e-70 268.1 213 66.2
Gorai.001G035100 Gossypium raimondii HOM05D005054 ORTHO05D005948 7.6e-70 267.7 179 76.5
PGR083G2649 Punica granatum HOM05D005054 ORTHO05D005948 1.7e-69 266.5 194 70.1
Cc08_g00410 Coffea canephora HOM05D005054 ORTHO05D005948 2.2e-69 266.2 202 69.8
Psat5g031480 Pisum sativum HOM05D005054 ORTHO05D005948 2.2e-69 266.2 177 75.7
CSS0023723 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 2.9e-69 265.8 209 66.5
Gohir.A07G029500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 2.9e-69 265.8 198 70.2
HanXRQChr13g0403241 Helianthus annuus HOM05D005054 ORTHO05D005948 2.9e-69 265.8 203 68.0
TAR625G0984 Trochodendron aralioides HOM05D005054 ORTHO05D005948 2.9e-69 265.8 198 67.2
FAN20G0036 Fragaria x ananassa HOM05D005054 ORTHO05D005948 3.8e-69 265.4 203 69.0
Gohir.D07G033500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 4.9e-69 265.0 198 70.2
COL.COLO4_18886 Corchorus olitorius HOM05D002641 ORTHO05D001537 8.4e-69 264.2 204 68.1
Duzib187G0432 Durio zibethinus HOM05D005054 ORTHO05D005948 8.4e-69 264.2 198 69.2
Gohir.A06G099200 Gossypium hirsutum HOM05D005054 ORTHO05D005948 1.4e-68 263.5 198 68.2
RcHm_v2.0_Chr6g0297531 Rosa chinensis HOM05D005054 ORTHO05D005948 1.4e-68 263.5 203 67.0
Lsat_1_v5_gn_6_20280 Lactuca sativa HOM05D005054 ORTHO05D005948 1.9e-68 263.1 201 66.2
Gohir.D06G101400 Gossypium hirsutum HOM05D005054 ORTHO05D005948 2.4e-68 262.7 196 68.9
ECA233G2586 Erigeron canadensis HOM05D005054 ORTHO05D005948 3.2e-68 262.3 204 67.6
FAN15G2263 Fragaria x ananassa HOM05D002641 ORTHO05D005948 3.2e-68 262.3 203 68.0
Gorai.010G116300 Gossypium raimondii HOM05D005054 ORTHO05D005948 4.2e-68 261.9 199 68.3
Nitab4.5_0003389g0010 Nicotiana tabacum HOM05D005054 ORTHO05D005948 4.2e-68 261.9 212 67.0
QL02p021123 Quercus lobata HOM05D005054 ORTHO05D005948 4.2e-68 261.9 205 66.3
FAN27G2872 Fragaria x ananassa HOM05D005054 ORTHO05D005948 5.4e-68 261.5 203 68.5
FvH4_2g28770 Fragaria vesca HOM05D005054 ORTHO05D005948 9.3e-68 260.8 203 67.5
FAN24G3113 Fragaria x ananassa HOM05D005054 ORTHO05D005948 9.3e-68 260.8 203 67.0
TAR626G0177 Trochodendron aralioides HOM05D005054 ORTHO05D005948 1.6e-67 260.0 204 65.7
EL10Ac2g04185 Beta vulgaris HOM05D005054 ORTHO05D005948 2.7e-67 259.2 211 66.8
HPP92_000468 Vanilla planifolia HOM05D005054 ORTHO05D005948 6.0e-67 258.1 199 64.3
unitig_0.g694 Utricularia gibba HOM05D005054 ORTHO05D005948 3.0e-66 255.8 197 65.5
CSS0023128 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 3.9e-66 255.4 199 66.3
CSS0037696 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 3.9e-66 255.4 199 66.3
Lj8A723T59 Lonicera japonica HOM05D005054 ORTHO05D005948 8.7e-66 254.2 154 80.5
ATR0767G140 Amborella trichopoda HOM05D005054 ORTHO05D005948 1.1e-65 253.8 198 66.7
Actinidia33783 Actinidia chinensis HOM05D005054 ORTHO05D005948 5.6e-65 251.5 153 79.1
Hund25870 Selenicereus undatus HOM05D005054 ORTHO05D005948 2.1e-64 249.6 208 64.4
PSO017G3131 Papaver somniferum HOM05D005054 ORTHO05D005948 6.2e-64 248.1 204 63.2
Zm00001eb275230 Zea mays HOM05D005054 ORTHO05D005948 8.1e-64 247.7 196 65.8
vmacro11190 Vaccinium macrocarpon HOM05D005054 ORTHO05D005948 1.4e-63 246.9 292 48.6
PSO170G1976 Papaver somniferum HOM05D005054 ORTHO05D005948 2.4e-63 246.1 207 62.8
Sopen06g024410 Solanum pennellii HOM05D005054 ORTHO05D005948 2.4e-63 246.1 188 69.7
CDE12G0076 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 1.2e-62 243.8 200 66.5
Actinidia22328 Actinidia chinensis HOM05D005054 ORTHO05D005948 2.0e-62 243.0 168 72.6
Migut.A00022 Erythranthe guttata HOM05D005054 ORTHO05D005948 4.5e-62 241.9 193 64.2
Os06g0644100 Oryza sativa ssp. japonica HOM05D005054 ORTHO05D005948 4.5e-62 241.9 179 67.0
CAN.G1475.8 Capsicum annuum HOM05D005054 ORTHO05D005948 7.6e-62 241.1 200 65.5
Solyc06g065930.4 Solanum lycopersicum HOM05D005054 ORTHO05D005948 9.9e-62 240.7 188 68.1
MSTRG.26017 Avicennia marina HOM05D005054 ORTHO05D005948 1.7e-61 240.0 193 64.8
SalBow4G2693 Salvia bowleyana HOM05D005054 ORTHO05D005948 1.4e-60 236.9 199 61.8
AUR62031549 Chenopodium quinoa HOM05D005054 ORTHO05D005948 2.4e-60 236.1 154 77.3
Rhsim02G0203400 Rhododendron simsii HOM05D005054 ORTHO05D005948 1.2e-59 233.8 191 63.9
Nitab4.5_0000109g0420 Nicotiana tabacum HOM05D005054 ORTHO05D005948 7.9e-59 231.1 162 72.2
AUR62012426 Chenopodium quinoa HOM05D005054 ORTHO05D005948 3.3e-57 225.7 210 61.0
CDE01G0036 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 7.4e-57 224.6 200 62.5
Atru.chr7.2466 Acer truncatum HOM05D002641 ORTHO05D001537 1.1e-55 220.7 171 67.3
Zm00001eb387020 Zea mays HOM05D005054 ORTHO05D005948 9.0e-55 217.6 169 65.7
Mapoly0003s0100 Marchantia polymorpha HOM05D005054 ORTHO05D005948 1.2e-54 217.2 186 58.6
PGSC0003DMG400029900 Solanum tuberosum HOM05D005054 ORTHO05D005948 7.1e-52 208.0 128 81.2
MBI14_g36925_MAGBIO Magnolia biondii HOM05D005054 ORTHO05D005948 2.1e-51 206.5 124 80.6
arahy.Tifrunner.gnm1.ann1.49IL45 Arachis hypogaea HOM05D005054 ORTHO05D005948 5.7e-49 198.4 209 58.4
Nitab4.5_0005785g0040 Nicotiana tabacum HOM05D005054 ORTHO05D005948 6.2e-48 194.9 123 78.0
AagrBONN_evm.TU.Sc2ySwM_362.161 Anthoceros agrestis HOM05D005054 ORTHO05D005948 6.9e-47 191.4 168 58.3
Pp3c25_10780 Physcomitrium patens HOM05D005054 ORTHO05D005948 4.5e-46 188.7 180 54.4
SMO354G0008 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 7.6e-46 188.0 150 62.0
Nitab4.5_0000857g0140 Nicotiana tabacum HOM05D005054 ORTHO05D005948 5.0e-45 185.3 163 63.2
Zm00001eb149990 Zea mays HOM05D005054 ORTHO05D005948 2.3e-42 176.4 113 74.3
SGA_v2.0_scaffold64G21960 Striga asiatica HOM05D005054 ORTHO05D005948 6.7e-42 174.9 187 51.9
Oeu024982.1 Olea europaea HOM05D005054 ORTHO05D005948 1.4e-39 167.2 183 53.6
DCAR_001545 Daucus carota HOM05D005054 ORTHO05D005948 3.1e-39 166.0 115 73.0
Actinidia14094 Actinidia chinensis HOM05D005054 ORTHO05D005948 3.4e-38 162.5 192 47.9
Peaxi162Scf00136g00153 Petunia axillaris HOM05D005054 ORTHO05D005948 3.4e-38 162.5 102 79.4
SMO364G0469 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 1.1e-36 157.5 149 53.7
arahy.Tifrunner.gnm1.ann1.M1LVA5 Arachis hypogaea HOM05D005054 ORTHO05D005948 1.2e-35 154.1 86 84.9
CBR_g24053 Chara braunii HOM05D005054 ORTHO05D005948 2.3e-34 149.8 158 48.1
HPP92_000478 Vanilla planifolia HOM05D005054 ORTHO05D005948 3.9e-34 149.1 173 48.0
CDE01G0528 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 1.8e-31 140.2 173 47.4
Zm00001eb279560 Zea mays HOM05D005054 ORTHO05D005948 1.1e-28 131.0 99 67.7
A01p06180 Brassica napus HOM05D000316 ORTHO05D001978 7.2e-28 128.3 74 78.4
C01p06810 Brassica napus HOM05D000316 ORTHO05D001978 2.7e-27 126.3 74 77.0
Aa31LG2G17830 Aethionema arabicum HOM05D005054 ORTHO05D005948 8.8e-26 121.3 91 64.8
MCO11G876 Micromonas commoda HOM05D005054 ORTHO05D005948 1.5e-17 94.0 148 39.2
Nitab4.5_0006784g0020 Nicotiana tabacum HOM05D005054 ORTHO05D005948 2.0e-17 93.6 208 36.1
Cre07.g340650 Chlamydomonas reinhardtii HOM05D005054 ORTHO05D005948 3.7e-16 89.4 171 33.3
Zm00001eb412760 Zea mays HOM05D002563 ORTHO05D005948 6.3e-16 88.6 52 73.1
Zm00001eb260640 Zea mays HOM05D002563 ORTHO05D005948 4.1e-15 85.9 52 73.1
FvH4_6g38550 Fragaria vesca HOM05D005054 ORTHO05D005948 4.5e-14 82.4 53 77.4
TPR.G18056 Trifolium pratense HOM05D005054 ORTHO05D005948 1.1e-12 77.8 62 69.4
Zm00001eb260650 Zea mays HOM05D005054 ORTHO05D005948 9.4e-12 74.7 56 71.4
EL10Ac1g01779 Beta vulgaris HOM05D005054 ORTHO05D005948 4.8e-08 62.4 40 77.5


User provided reference genes

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