Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G25250 Arabidopsis thaliana HOM05D001921 ORTHO05D001784 2.6e-83 312.0 156 100.0
CARHR116380 Cardamine hirsuta HOM05D001921 ORTHO05D001784 1.5e-51 206.5 170 69.4
AL4G16560 Arabidopsis lyrata HOM05D001921 ORTHO05D001784 7.9e-40 167.5 156 63.5
Thhalv10000356m.g Eutrema salsugineum HOM05D001921 ORTHO05D001784 5.7e-38 161.4 169 56.8
BcaB08g35169 Brassica carinata HOM05D018780 ORTHO05D001784 8.5e-34 147.5 161 54.7
Carub.0004s0487 Capsella rubella HOM05D001921 ORTHO05D001784 1.9e-33 146.4 156 60.9
CARHR239920 Cardamine hirsuta HOM05D001921 ORTHO05D001784 6.7e-31 137.9 191 49.2
Aa31sc859G10 Aethionema arabicum HOM05D001921 ORTHO05D001784 9.7e-30 134.0 197 45.2
C07p59050 Brassica napus HOM05D001921 ORTHO05D001784 4.8e-29 131.7 181 48.6
A03p61190 Brassica napus HOM05D001921 ORTHO05D001784 8.2e-29 131.0 180 48.9
Thhalv10026353m.g Eutrema salsugineum HOM05D001921 ORTHO05D001784 8.2e-29 131.0 187 49.2
Sp7g29820 Schrenkiella parvula HOM05D001921 ORTHO05D001784 3.1e-28 129.0 189 47.6
BraA03t15157Z Brassica rapa HOM05D001921 ORTHO05D001784 6.9e-28 127.9 179 48.0
Sp4g04350 Schrenkiella parvula HOM05D001921 ORTHO05D001784 2.0e-27 126.3 178 47.8
BolC7t46353H Brassica oleracea HOM05D001921 ORTHO05D001784 1.0e-26 124.0 184 46.2
Carub.0007s0853 Capsella rubella HOM05D001921 ORTHO05D001784 3.8e-26 122.1 206 44.7
BcaC07g40877 Brassica carinata HOM05D018780 ORTHO05D001784 5.0e-26 121.7 165 49.7
BcaC07g40878 Brassica carinata HOM05D018780 ORTHO05D001784 5.0e-26 121.7 165 49.7
THA.LOC104804502 Tarenaya hassleriana HOM05D001921 ORTHO05D001784 7.2e-25 117.9 170 48.8
A09p55760 Brassica napus HOM05D018780 ORTHO05D001784 2.1e-24 116.3 161 48.4
THA.LOC104818602 Tarenaya hassleriana HOM05D001921 ORTHO05D001784 2.7e-24 115.9 198 41.4
BraA09t40976Z Brassica rapa HOM05D018780 ORTHO05D001784 6.1e-24 114.8 160 47.5
AL7G19870 Arabidopsis lyrata HOM05D001921 ORTHO05D001784 2.2e-21 106.3 193 43.5
THA.LOC104803850 Tarenaya hassleriana HOM05D001921 ORTHO05D001784 1.1e-20 104.0 200 40.0
A01p06280 Brassica napus HOM05D001921 ORTHO05D001784 2.4e-20 102.8 198 40.9
AT4G32020 Arabidopsis thaliana HOM05D001921 ORTHO05D001784 4.1e-20 102.1 191 42.4
BcaNung03129 Brassica carinata HOM05D001921 ORTHO05D001784 5.3e-20 101.7 166 44.0
Duzib168G1630 Durio zibethinus HOM05D001921 ORTHO05D001784 8.5e-18 94.4 182 41.2
C01p06910 Brassica napus HOM05D001921 ORTHO05D001784 2.5e-17 92.8 213 36.2
Duzib187G0974 Durio zibethinus HOM05D001921 ORTHO05D001784 4.2e-17 92.0 182 38.5
Thecc.09G018900 Theobroma cacao HOM05D001921 ORTHO05D001784 5.5e-17 91.7 177 37.3
Aa31LG2G18040 Aethionema arabicum HOM05D001921 ORTHO05D001784 9.4e-17 90.9 182 40.7
Gorai.010G117300 Gossypium raimondii HOM05D001921 ORTHO05D001784 4.7e-16 88.6 175 38.9
Manes.16G126400 Manihot esculenta HOM05D001921 ORTHO05D001784 6.1e-16 88.2 182 37.4
Gohir.A06G100200 Gossypium hirsutum HOM05D001921 ORTHO05D001784 8.0e-16 87.8 175 37.1
BcaC09g51990 Brassica carinata HOM05D001921 ORTHO05D001784 1.0e-15 87.4 211 36.5
BraA01t00594Z Brassica rapa HOM05D001921 ORTHO05D001784 1.0e-15 87.4 211 36.5
BolC1t00688H Brassica oleracea HOM05D001921 ORTHO05D001784 1.4e-15 87.0 204 36.8
Gohir.D06G102300 Gossypium hirsutum HOM05D001921 ORTHO05D001784 1.4e-15 87.0 175 38.9
COL.COLO4_18922 Corchorus olitorius HOM05D001921 ORTHO05D001784 1.5e-14 83.6 181 35.9
Gohir.A07G030700 Gossypium hirsutum HOM05D001921 ORTHO05D001784 1.3e-13 80.5 181 36.5
CiPaw.07G227300 Carya illinoinensis HOM05D001921 ORTHO05D001784 2.2e-13 79.7 171 37.4
TWI32G1277 Tripterygium wilfordii HOM05D001921 ORTHO05D001784 2.2e-13 79.7 192 37.0
Ciclev10009542m.g Citrus clementina HOM05D001921 ORTHO05D001784 3.7e-13 79.0 199 35.7
Atru.chr7.2506 Acer truncatum HOM05D001921 ORTHO05D001784 1.1e-12 77.4 78 50.0
CiPaw.08G008000 Carya illinoinensis HOM05D001921 ORTHO05D001784 1.8e-12 76.6 186 37.6
TWI63G0810 Tripterygium wilfordii HOM05D001921 ORTHO05D001784 1.8e-12 76.6 184 37.0
Gohir.D07G034600 Gossypium hirsutum HOM05D001921 ORTHO05D001784 5.3e-12 75.1 181 35.4
Peaxi162Scf00116g00043 Petunia axillaris HOM05D001921 ORTHO05D001784 3.5e-11 72.4 161 34.8
Cpa.g.sc127.3 Carica papaya HOM05D001921 ORTHO05D001784 4.5e-11 72.0 184 34.8
Gorai.001G036300 Gossypium raimondii HOM05D001921 ORTHO05D001784 5.9e-11 71.6 181 34.3
Dinv41418 Davidia involucrata HOM05D001921 ORTHO05D001784 1.7e-10 70.1 145 36.6
Hma1.2p1_2976F.1_g331170 Hydrangea macrophylla HOM05D001921 ORTHO05D001784 1.1e-09 67.4 107 40.2
Hma1.2p1_0028F.1_g017215 Hydrangea macrophylla HOM05D001921 ORTHO05D001784 1.5e-09 67.0 107 40.2
Nn2g12262 Nelumbo nucifera HOM05D001921 ORTHO05D001784 1.5e-09 67.0 189 33.9
Rhsim02G0206800 Rhododendron simsii HOM05D001921 ORTHO05D001784 1.5e-09 67.0 166 37.3
CAN.G142.1 Capsicum annuum HOM05D001921 ORTHO05D001784 2.5e-09 66.2 183 33.9
Nitab4.5_0002992g0090 Nicotiana tabacum HOM05D001921 ORTHO05D001784 3.2e-09 65.9 184 32.6
Prupe.1G486800 Prunus persica HOM05D001921 ORTHO05D001784 5.5e-09 65.1 181 33.7
BraA03t15164Z Brassica rapa HOM05D001921 ORTHO05D001784 7.2e-09 64.7 125 41.6
Cfa013096 Carpinus fangiana HOM05D001921 ORTHO05D001784 7.2e-09 64.7 169 34.9
Sabra18G0025100 Salix brachista HOM05D001921 ORTHO05D001784 7.2e-09 64.7 191 31.4
CAN.G1045.40 Capsicum annuum HOM05D001921 ORTHO05D001784 9.4e-09 64.3 174 31.6
Manes.03G011300 Manihot esculenta HOM05D001921 ORTHO05D001784 9.4e-09 64.3 186 32.8
Solyc08g041860.1 Solanum lycopersicum HOM05D001921 ORTHO05D001784 9.4e-09 64.3 171 33.9
Sopen08g012070 Solanum pennellii HOM05D001921 ORTHO05D001784 9.4e-09 64.3 171 33.9
Cfa013095 Carpinus fangiana HOM05D001921 ORTHO05D001784 2.1e-08 63.2 173 34.1
Nitab4.5_0009186g0010 Nicotiana tabacum HOM05D001921 ORTHO05D001784 2.1e-08 63.2 192 30.7
Dinv03521 Davidia involucrata HOM05D001921 ORTHO05D001784 2.7e-08 62.8 189 31.2
Glyma.06G064500 Glycine max HOM05D001921 ORTHO05D001784 2.7e-08 62.8 168 33.3
RcHm_v2.0_Chr6g0297171 Rosa chinensis HOM05D014836 ORTHO05D001784 2.7e-08 62.8 194 30.9
Cfa020875 Carpinus fangiana HOM05D001921 ORTHO05D001784 3.6e-08 62.4 177 32.2
Lalb_Chr08g0244291 Lupinus albus HOM05D001921 ORTHO05D001784 4.7e-08 62.0 157 34.4
PGR044G0696 Punica granatum HOM05D001921 ORTHO05D001784 4.7e-08 62.0 193 31.1
Phvul.009G089600 Phaseolus vulgaris HOM05D001921 ORTHO05D001784 6.1e-08 61.6 190 32.6
Potri.018G022400 Populus trichocarpa HOM05D001921 ORTHO05D001784 6.1e-08 61.6 188 29.3
Prupe.1G486700 Prunus persica HOM05D001921 ORTHO05D001784 6.1e-08 61.6 180 30.6
PGSC0003DMG400029898 Solanum tuberosum HOM05D001921 ORTHO05D001784 6.1e-08 61.6 174 33.3
Dinv42904 Davidia involucrata HOM05D001921 ORTHO05D001784 1.0e-07 60.8 180 31.1
Dinv43197 Davidia involucrata HOM05D001921 ORTHO05D001784 1.0e-07 60.8 180 31.1
SabraUnG0005100 Salix brachista HOM05D001921 ORTHO05D001784 1.4e-07 60.5 184 33.7
PGSC0003DMG401013517 Solanum tuberosum HOM05D001921 ORTHO05D001784 3.0e-07 59.3 157 33.8
Oeu012641.1 Olea europaea HOM05D001921 ORTHO05D001784 4.0e-07 58.9 187 31.6
Sabra06G0203000 Salix brachista HOM05D001921 ORTHO05D001784 4.0e-07 58.9 184 33.2
TAR383G0606 Trochodendron aralioides HOM05D001921 ORTHO05D001784 4.0e-07 58.9 190 31.6
CANSAT25G3188 Cannabis sativa HOM05D001921 ORTHO05D001784 5.2e-07 58.5 174 32.2
TAR365G0872 Trochodendron aralioides HOM05D001921 ORTHO05D001784 5.2e-07 58.5 184 31.0
Haze_19306 Corylus avellana HOM05D001921 ORTHO05D001784 8.8e-07 57.8 178 30.9
Sc23g0006510 Simmondsia chinensis HOM05D001921 ORTHO05D001784 1.5e-06 57.0 157 32.5
DCAR_014829 Daucus carota HOM05D001921 ORTHO05D001784 2.0e-06 56.6 167 30.5
MD15G1131400 Malus domestica HOM05D001921 ORTHO05D001784 3.3e-06 55.8 198 30.3
CSS0005509 Camellia sinensis var. sinensis HOM05D001921 ORTHO05D001784 4.4e-06 55.5 175 31.4
CANSAT11G0699 Cannabis sativa HOM05D001921 ORTHO05D001784 4.4e-06 55.5 210 27.6
DCAR_023282 Daucus carota HOM05D001921 ORTHO05D001784 4.4e-06 55.5 178 31.5
FAN26G0252 Fragaria x ananassa HOM05D001921 ORTHO05D001784 4.4e-06 55.5 202 30.2
Glyma.04G063200 Glycine max HOM05D001921 ORTHO05D001784 4.4e-06 55.5 180 33.3
C08p38750 Brassica napus HOM05D018780 ORTHO05D001784 5.7e-06 55.1 121 39.7
BolC8t51445H Brassica oleracea HOM05D018780 ORTHO05D001784 5.7e-06 55.1 121 39.7
Eucgr.C02723 Eucalyptus grandis HOM05D001921 ORTHO05D001784 5.7e-06 55.1 193 30.1
Psat4g034000 Pisum sativum HOM05D001921 ORTHO05D001784 5.7e-06 55.1 204 28.9
Potri.006G260000 Populus trichocarpa HOM05D001921 ORTHO05D001784 5.7e-06 55.1 183 32.8
CiPaw.02G088800 Carya illinoinensis HOM05D001921 ORTHO05D001784 7.5e-06 54.7 167 31.1
FAN23G0500 Fragaria x ananassa HOM05D001921 ORTHO05D001784 7.5e-06 54.7 201 30.3
TAR362G1200 Trochodendron aralioides HOM05D001921 ORTHO05D001784 7.5e-06 54.7 178 30.3
VMungo1215G2840 Vigna mungo HOM05D001921 ORTHO05D001784 7.5e-06 54.7 155 31.0
C09p01610 Brassica napus HOM05D001921 ORTHO05D001784 9.7e-06 54.3 151 29.1
BolC9t53094H Brassica oleracea HOM05D001921 ORTHO05D001784 9.7e-06 54.3 151 29.1
DCAR_027127 Daucus carota HOM05D001921 ORTHO05D001784 9.7e-06 54.3 164 29.9
Medtr4g116830 Medicago truncatula HOM05D001921 ORTHO05D001784 9.7e-06 54.3 109 34.9


User provided reference genes

Program Settings