Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G24970 Arabidopsis thaliana HOM05D006886 ORTHO05D008494 1.4e-81 306.2 153 100.0
AL4G16050 Arabidopsis lyrata HOM05D006886 ORTHO05D008494 1.4e-73 279.6 153 90.8
Sp4g03960 Schrenkiella parvula HOM05D006886 ORTHO05D008494 4.7e-69 264.6 153 86.3
Carub.0004s0454 Capsella rubella HOM05D006886 ORTHO05D008494 3.0e-68 261.9 153 86.9
Thhalv10000363m.g Eutrema salsugineum HOM05D006886 ORTHO05D008494 1.1e-67 260.0 148 87.8
CARHR116750 Cardamine hirsuta HOM05D006886 ORTHO05D008494 1.5e-67 259.6 153 85.0
A09p55990 Brassica napus HOM05D006886 ORTHO05D008494 8.2e-66 253.8 156 84.6
A09p56060 Brassica napus HOM05D006886 ORTHO05D008494 8.2e-66 253.8 156 84.6
BraA09t41001Z Brassica rapa HOM05D006886 ORTHO05D008494 8.2e-66 253.8 156 84.6
C08p38980 Brassica napus HOM05D006886 ORTHO05D008494 3.5e-64 248.4 153 83.0
BcaC07g40900 Brassica carinata HOM05D006886 ORTHO05D008494 2.3e-60 235.7 146 83.6
BolC8t51472H Brassica oleracea HOM05D006886 ORTHO05D008494 2.3e-60 235.7 146 83.6
THA.LOC104819952 Tarenaya hassleriana HOM05D006886 ORTHO05D008494 3.7e-58 228.4 153 74.5
BcaB08g35125 Brassica carinata HOM05D006886 ORTHO05D008494 4.7e-53 211.5 123 86.2
Cpa.g.sc148.45 Carica papaya HOM05D006886 ORTHO05D008494 6.3e-50 201.1 154 66.2
COL.COLO4_18973 Corchorus olitorius HOM05D006886 ORTHO05D008494 3.5e-48 195.3 150 65.3
CiPaw.07G233000 Carya illinoinensis HOM05D006886 ORTHO05D008494 7.7e-48 194.1 155 63.2
Glyma.17G221700 Glycine max HOM05D006886 ORTHO05D008494 5.0e-47 191.4 150 62.0
Dinv03403 Davidia involucrata HOM05D006886 ORTHO05D008494 6.5e-47 191.0 152 61.2
Potri.018G016300 Populus trichocarpa HOM05D006886 ORTHO05D008494 6.5e-47 191.0 155 62.6
Duzib168G1824 Durio zibethinus HOM05D006886 ORTHO05D008494 1.9e-46 189.5 150 63.3
Glyma.14G104300 Glycine max HOM05D006886 ORTHO05D008494 5.5e-46 188.0 150 61.3
Gohir.A07G033700 Gossypium hirsutum HOM05D006886 ORTHO05D008494 7.2e-46 187.6 149 63.1
MD08G1052100 Malus domestica HOM05D006886 ORTHO05D008494 1.6e-45 186.4 146 61.6
TPR.G38843 Trifolium pratense HOM05D006886 ORTHO05D008494 1.6e-45 186.4 150 58.7
Actinidia22280 Actinidia chinensis HOM05D006886 ORTHO05D008494 8.0e-45 184.1 152 60.5
Rhsim02G0217500 Rhododendron simsii HOM05D006886 ORTHO05D008494 8.0e-45 184.1 146 61.6
Manes.16G132100 Manihot esculenta HOM05D006886 ORTHO05D008494 1.0e-44 183.7 159 61.6
Sabra18G0019800 Salix brachista HOM05D006886 ORTHO05D008494 1.8e-44 183.0 165 58.8
Cfa013010 Carpinus fangiana HOM05D006886 ORTHO05D008494 2.3e-44 182.6 157 60.5
QL02p018037 Quercus lobata HOM05D006886 ORTHO05D008494 2.3e-44 182.6 145 62.8
TWI63G0132 Tripterygium wilfordii HOM05D006886 ORTHO05D008494 2.3e-44 182.6 152 60.5
Aa31sc83G60 Aethionema arabicum HOM05D006886 ORTHO05D008494 3.0e-44 182.2 110 82.7
arahy.Tifrunner.gnm1.ann1.QF2P07 Arachis hypogaea HOM05D006886 ORTHO05D008494 4.0e-44 181.8 153 60.1
Phvul.001G042700 Phaseolus vulgaris HOM05D006886 ORTHO05D008494 5.2e-44 181.4 150 58.7
Lj5g0011023 Lotus japonicus HOM05D006886 ORTHO05D008494 6.8e-44 181.0 148 59.5
CANSAT25G2371 Cannabis sativa HOM05D006886 ORTHO05D008494 8.8e-44 180.6 155 60.6
Duzib187G0928 Durio zibethinus HOM05D006886 ORTHO05D008494 1.2e-43 180.3 150 58.7
MD15G1043400 Malus domestica HOM05D006886 ORTHO05D008494 2.0e-43 179.5 146 59.6
Haze_21375 Corylus avellana HOM05D006886 ORTHO05D008494 2.6e-43 179.1 154 59.7
RcHm_v2.0_Chr6g0299191 Rosa chinensis HOM05D006886 ORTHO05D008494 3.4e-43 178.7 149 60.4
Medtr1g013640 Medicago truncatula HOM05D006886 ORTHO05D008494 5.7e-43 177.9 150 56.0
CAN.G285.18 Capsicum annuum HOM05D006886 ORTHO05D008494 7.5e-43 177.6 148 61.5
Ciclev10010834m.g Citrus clementina HOM05D006886 ORTHO05D008494 1.7e-42 176.4 154 58.4
PGSC0003DMG400026287 Solanum tuberosum HOM05D006886 ORTHO05D008494 3.7e-42 175.3 159 57.2
Nitab4.5_0000264g0070 Nicotiana tabacum HOM05D006886 ORTHO05D008494 8.3e-42 174.1 151 58.9
Lj7A737T48 Lonicera japonica HOM05D006886 ORTHO05D008494 1.1e-41 173.7 149 58.4
Cc08_g07710 Coffea canephora HOM05D006886 ORTHO05D008494 1.8e-41 172.9 151 57.0
Aqoxy7G03293 Aquilegia oxysepala HOM05D006886 ORTHO05D008494 2.4e-41 172.6 155 57.4
Sopen08g002580 Solanum pennellii HOM05D006886 ORTHO05D008494 2.4e-41 172.6 159 56.6
Lsat_1_v5_gn_3_22560 Lactuca sativa HOM05D006886 ORTHO05D008494 3.1e-41 172.2 146 58.2
MSTRG.11790 Avicennia marina HOM05D006886 ORTHO05D008494 4.1e-41 171.8 149 59.1
EL10Ac2g02461 Beta vulgaris HOM05D006886 ORTHO05D008494 9.2e-41 170.6 149 57.7
Ca_13077_v3 Cicer arietinum L. HOM05D006886 ORTHO05D008494 9.2e-41 170.6 168 51.2
Solyc08g006630.3 Solanum lycopersicum HOM05D006886 ORTHO05D008494 9.2e-41 170.6 159 56.0
ECA246G1281 Erigeron canadensis HOM05D006886 ORTHO05D008494 1.2e-40 170.2 154 57.8
Eucgr.F04206 Eucalyptus grandis HOM05D006886 ORTHO05D008494 1.6e-40 169.9 150 56.0
Atru.chr7.2575 Acer truncatum HOM05D006886 ORTHO05D008494 3.5e-40 168.7 151 56.3
Thecc.09G013300 Theobroma cacao HOM05D006886 ORTHO05D008494 4.5e-40 168.3 123 67.5
Hma1.2p1_0355F.1_g133950 Hydrangea macrophylla HOM05D006886 ORTHO05D008494 7.7e-40 167.5 153 54.9
PGR042G1056 Punica granatum HOM05D006886 ORTHO05D008494 7.7e-40 167.5 143 60.1
SGA_v2.0_scaffold27G11627 Striga asiatica HOM05D006886 ORTHO05D008494 7.7e-40 167.5 149 56.4
Actinidia14002 Actinidia chinensis HOM05D006886 ORTHO05D008494 1.3e-39 166.8 148 56.8
Oeu010292.1 Olea europaea HOM05D006886 ORTHO05D008494 1.7e-39 166.4 146 56.2
Ah.15g098740 Amaranthus hybridus HOM05D006886 ORTHO05D008494 2.3e-39 166.0 145 56.6
CsaV3_4G036380 Cucumis sativus L. HOM05D006886 ORTHO05D008494 5.0e-39 164.9 148 55.4
HanXRQChr17g0536351 Helianthus annuus HOM05D006886 ORTHO05D008494 5.0e-39 164.9 154 55.2
Prupe.1G396800 Prunus persica HOM05D006886 ORTHO05D008494 6.6e-39 164.5 126 62.7
Gorai.001G038900 Gossypium raimondii HOM05D006886 ORTHO05D008494 8.6e-39 164.1 123 66.7
PSO063G3428 Papaver somniferum HOM05D006886 ORTHO05D008494 2.5e-38 162.5 149 54.4
Hund25607 Selenicereus undatus HOM05D006886 ORTHO05D008494 7.3e-38 161.0 149 55.0
Migut.A00389 Erythranthe guttata HOM05D006886 ORTHO05D008494 9.5e-38 160.6 148 56.8
Lalb_Chr14g0361721 Lupinus albus HOM05D006886 ORTHO05D008494 1.2e-37 160.2 147 52.4
Sed0006692 Sechium edule HOM05D006886 ORTHO05D008494 1.2e-37 160.2 148 53.4
CDE04G0647 Ceratophyllum demersum HOM05D006886 ORTHO05D008494 1.6e-37 159.8 146 55.5
arahy.Tifrunner.gnm1.ann1.5WK6RP Arachis hypogaea HOM05D006886 ORTHO05D008494 2.1e-37 159.5 132 60.6
PSO782G0555 Papaver somniferum HOM05D006886 ORTHO05D008494 3.6e-37 158.7 149 53.0
Psat6g024960 Pisum sativum HOM05D006886 ORTHO05D008494 4.7e-37 158.3 150 51.3
vmacro11273 Vaccinium macrocarpon HOM05D006886 ORTHO05D008494 8.0e-37 157.5 183 49.2
Sc17g0004260 Simmondsia chinensis HOM05D006886 ORTHO05D008494 1.8e-36 156.4 156 53.8
FAN27G2382 Fragaria x ananassa HOM05D006886 ORTHO05D008494 4.0e-36 155.2 125 60.0
AUR62032440 Chenopodium quinoa HOM05D006886 ORTHO05D008494 2.6e-35 152.5 171 48.5
Nn2g12469 Nelumbo nucifera HOM05D006886 ORTHO05D008494 2.6e-35 152.5 121 62.0
CSS0014970 Camellia sinensis var. sinensis HOM05D006886 ORTHO05D008494 5.7e-35 151.4 126 61.1
TAR625G1053 Trochodendron aralioides HOM05D006886 ORTHO05D008494 5.7e-35 151.4 120 60.8
VMungo0647G1481 Vigna mungo HOM05D006886 ORTHO05D008494 8.3e-34 147.5 123 56.9
Dinv16422 Davidia involucrata HOM05D006886 ORTHO05D008494 1.1e-33 147.1 127 57.5
ATR0580G343 Amborella trichopoda HOM05D006886 ORTHO05D008494 2.7e-32 142.5 141 53.9
MBI15_g26075_MAGBIO Magnolia biondii HOM05D006886 ORTHO05D008494 4.6e-32 141.7 190 44.2
FvH4_2g41341 Fragaria vesca HOM05D006886 ORTHO05D008494 6.6e-31 137.9 114 59.6
FAN15G0524 Fragaria x ananassa HOM05D006886 ORTHO05D008494 3.3e-30 135.6 111 59.5
AUR62024781 Chenopodium quinoa HOM05D006886 ORTHO05D008494 2.1e-29 132.9 112 57.1
Peaxi162Scf00045g01941 Petunia axillaris HOM05D006886 ORTHO05D008494 5.2e-28 128.3 159 47.8
SHI21090 Sapria himalayana HOM05D006886 ORTHO05D008494 3.4e-27 125.6 104 56.7
Nitab4.5_0001362g0050 Nicotiana tabacum HOM05D006886 ORTHO05D008494 9.8e-27 124.0 96 60.4
ClCG05G016110 Citrullus lanatus HOM05D006886 ORTHO05D008494 6.4e-26 121.3 110 58.2
Cfa001083 Carpinus fangiana HOM05D006886 ORTHO05D008494 1.9e-25 119.8 157 45.2
Pp3c17_11010 Physcomitrium patens HOM05D006886 ORTHO05D008494 5.6e-22 108.2 140 42.1
RcHm_v2.0_Chr7g0186961 Rosa chinensis HOM05D006886 ORTHO05D008494 7.3e-22 107.8 86 59.3
Pp3c14_9080 Physcomitrium patens HOM05D006886 ORTHO05D008494 4.7e-21 105.1 123 42.3
Os01g0766400 Oryza sativa ssp. japonica HOM05D006886 ORTHO05D008494 1.1e-20 104.0 144 40.3
Zm00001eb192560 Zea mays HOM05D006886 ORTHO05D008494 5.2e-20 101.7 145 40.0
GSVIVG01036003001 Vitis vinifera HOM05D006886 ORTHO05D008494 3.4e-19 99.0 75 61.3
Gohir.D07G037233 Gossypium hirsutum HOM05D006886 ORTHO05D008494 4.4e-19 98.6 71 64.8
GSVIVG01036001001 Vitis vinifera HOM05D006886 ORTHO05D008494 2.9e-18 95.9 80 63.8
Hma1.2p1_0355F.1_g133940 Hydrangea macrophylla HOM05D006886 ORTHO05D008494 2.4e-17 92.8 79 55.7
MELO3C032323.2 Cucumis melo HOM05D006886 ORTHO05D008494 3.2e-17 92.4 71 57.7
Mapoly0034s0101 Marchantia polymorpha HOM05D006886 ORTHO05D008494 4.6e-16 88.6 150 34.7
MD05G1059000 Malus domestica HOM05D006886 ORTHO05D008494 3.0e-15 85.9 82 52.4
Cfa023326 Carpinus fangiana HOM05D006886 ORTHO05D008494 1.5e-14 83.6 87 52.9
AagrBONN_evm.TU.Sc2ySwM_344.4138 Anthoceros agrestis HOM05D006886 ORTHO05D008494 1.6e-13 80.1 117 37.6
SalBow4G1854 Salvia bowleyana HOM05D006886 ORTHO05D008494 1.8e-12 76.6 82 50.0
MELO3C032324.2 Cucumis melo HOM05D006886 ORTHO05D008494 3.8e-10 68.9 95 43.2
Ca_06796_v3 Cicer arietinum L. HOM05D006886 ORTHO05D008494 4.9e-10 68.6 82 45.1
Cre03.g201500 Chlamydomonas reinhardtii HOM05D006886 ORTHO05D008494 8.6e-07 57.8 139 25.9
Ca_13745_v3 Cicer arietinum L. HOM05D006886 ORTHO05D008494 3.3e-06 55.8 55 52.7


User provided reference genes

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