Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G24860 Arabidopsis thaliana HOM05D007253 ORTHO05D009055 1.9e-67 259.2 145 100.0
AL4G15950 Arabidopsis lyrata HOM05D007253 ORTHO05D009055 1.7e-60 236.1 146 93.2
Carub.0004s0449 Capsella rubella HOM05D007253 ORTHO05D009055 2.5e-56 222.2 145 89.0
Thhalv10000367m.g Eutrema salsugineum HOM05D007253 ORTHO05D009055 1.8e-54 216.1 146 87.0
CARHR116800 Cardamine hirsuta HOM05D007253 ORTHO05D009055 8.9e-54 213.8 146 86.3
BcaB06g28020 Brassica carinata HOM05D007253 ORTHO05D009055 2.0e-53 212.6 149 83.2
A04p19250 Brassica napus HOM05D007253 ORTHO05D009055 2.0e-53 212.6 149 83.9
BraA04t17525Z Brassica rapa HOM05D007253 ORTHO05D009055 2.0e-53 212.6 149 83.9
BcaC02g08395 Brassica carinata HOM05D007253 ORTHO05D009055 4.4e-53 211.5 149 83.2
C04p54740 Brassica napus HOM05D007253 ORTHO05D009055 4.4e-53 211.5 149 83.2
BolC4t27019H Brassica oleracea HOM05D007253 ORTHO05D009055 5.8e-53 211.1 149 83.2
Sp4g03910 Schrenkiella parvula HOM05D007253 ORTHO05D009055 7.1e-51 204.1 149 82.6
Aa31LG7G11560 Aethionema arabicum HOM05D007253 ORTHO05D009055 1.1e-46 190.3 144 79.9
THA.LOC104803610 Tarenaya hassleriana HOM05D007253 ORTHO05D009055 1.5e-37 159.8 144 70.1
Manes.03G007000 Manihot esculenta HOM05D007253 ORTHO05D009055 3.5e-34 148.7 151 66.2
TWI63G1073 Tripterygium wilfordii HOM05D007253 ORTHO05D009055 3.5e-34 148.7 155 61.9
COL.COLO4_18974 Corchorus olitorius HOM05D007253 ORTHO05D009055 7.9e-34 147.5 101 85.1
Actinidia14140 Actinidia chinensis HOM05D007253 ORTHO05D009055 1.3e-33 146.7 145 66.2
Ciclev10009764m.g Citrus clementina HOM05D007253 ORTHO05D009055 2.3e-33 146.0 148 64.9
CSS0046604 Camellia sinensis var. sinensis HOM05D007253 ORTHO05D009055 3.9e-33 145.2 151 61.6
CSS0050010 Camellia sinensis var. sinensis HOM05D007253 ORTHO05D009055 3.9e-33 145.2 151 61.6
RcHm_v2.0_Chr6g0299201 Rosa chinensis HOM05D007253 ORTHO05D009055 1.1e-32 143.7 151 62.9
Nn8g40104 Nelumbo nucifera HOM05D007253 ORTHO05D009055 2.5e-32 142.5 100 84.0
Cpa.g.sc148.44 Carica papaya HOM05D007253 ORTHO05D009055 4.3e-32 141.7 146 63.7
ATR0580G321 Amborella trichopoda HOM05D007253 ORTHO05D009055 7.4e-32 141.0 141 63.1
Thecc.09G013200 Theobroma cacao HOM05D007253 ORTHO05D009055 7.4e-32 141.0 101 84.2
Prupe.1G396700 Prunus persica HOM05D007253 ORTHO05D009055 1.3e-31 140.2 150 62.7
Duzib168G0559 Durio zibethinus HOM05D007253 ORTHO05D009055 1.6e-31 139.8 99 85.9
Psat5g033080 Pisum sativum HOM05D007253 ORTHO05D009055 1.6e-31 139.8 138 66.7
Duzib187G0122 Durio zibethinus HOM05D007253 ORTHO05D009055 2.1e-31 139.4 100 80.0
Eucgr.C04033 Eucalyptus grandis HOM05D007253 ORTHO05D009055 2.1e-31 139.4 98 87.8
MD15G1043300 Malus domestica HOM05D007253 ORTHO05D009055 2.1e-31 139.4 149 62.4
Nitab4.5_0000264g0020 Nicotiana tabacum HOM05D007253 ORTHO05D009055 2.8e-31 139.0 144 62.5
Dinv03404 Davidia involucrata HOM05D007253 ORTHO05D009055 3.7e-31 138.7 151 61.6
CSS0026470 Camellia sinensis var. sinensis HOM05D007253 ORTHO05D009055 4.8e-31 138.3 100 79.0
CSS0024958 Camellia sinensis var. sinensis HOM05D007253 ORTHO05D009055 6.2e-31 137.9 156 57.7
FvH4_2g41340 Fragaria vesca HOM05D007253 ORTHO05D009055 8.1e-31 137.5 152 61.8
CiPaw.07G233200 Carya illinoinensis HOM05D007253 ORTHO05D009055 1.1e-30 137.1 150 61.3
CDE05G3047 Ceratophyllum demersum HOM05D007253 ORTHO05D009055 1.4e-30 136.7 127 70.1
FAN27G1409 Fragaria x ananassa HOM05D007253 ORTHO05D009055 1.4e-30 136.7 152 61.2
Medtr3g105830 Medicago truncatula HOM05D007253 ORTHO05D009055 1.4e-30 136.7 138 65.9
PGR044G0212 Punica granatum HOM05D007253 ORTHO05D009055 1.4e-30 136.7 145 65.5
FAN15G3156 Fragaria x ananassa HOM05D007253 ORTHO05D009055 1.8e-30 136.3 152 61.2
TAR626G1108 Trochodendron aralioides HOM05D007253 ORTHO05D009055 1.8e-30 136.3 100 81.0
GSVIVG01035999001 Vitis vinifera HOM05D007253 ORTHO05D009055 1.8e-30 136.3 100 84.0
HanXRQChr13g0413301 Helianthus annuus HOM05D007253 ORTHO05D009055 2.4e-30 136.0 101 79.2
Hund25608 Selenicereus undatus HOM05D007253 ORTHO05D009055 2.4e-30 136.0 101 77.2
Atru.chr7.2576 Acer truncatum HOM05D007253 ORTHO05D009055 3.1e-30 135.6 154 61.0
Sc09g0010780 Simmondsia chinensis HOM05D007253 ORTHO05D009055 4.0e-30 135.2 144 62.5
Aqoxy7G03301 Aquilegia oxysepala HOM05D007253 ORTHO05D009055 5.3e-30 134.8 101 63.4
CANSAT35G1478 Cannabis sativa HOM05D007253 ORTHO05D009055 5.3e-30 134.8 101 78.2
Nitab4.5_0005450g0020 Nicotiana tabacum HOM05D007253 ORTHO05D009055 5.3e-30 134.8 144 59.7
Gohir.D05G063600 Gossypium hirsutum HOM05D007253 ORTHO05D009055 6.9e-30 134.4 100 82.0
Gorai.009G064300 Gossypium raimondii HOM05D007253 ORTHO05D009055 6.9e-30 134.4 100 83.0
Lj1g0002882 Lotus japonicus HOM05D007253 ORTHO05D009055 9.0e-30 134.0 99 77.8
PSO063G6023 Papaver somniferum HOM05D007253 ORTHO05D009055 9.0e-30 134.0 116 73.3
ClCG05G016120 Citrullus lanatus HOM05D007253 ORTHO05D009055 2.0e-29 132.9 100 80.0
MELO3C016946.2 Cucumis melo HOM05D007253 ORTHO05D009055 2.0e-29 132.9 156 59.0
Cc08_g07700 Coffea canephora HOM05D007253 ORTHO05D009055 2.6e-29 132.5 100 79.0
Ah.00g238170 Amaranthus hybridus HOM05D007253 ORTHO05D009055 3.4e-29 132.1 101 76.2
Ah.12g060580 Amaranthus hybridus HOM05D007253 ORTHO05D009055 3.4e-29 132.1 101 76.2
arahy.Tifrunner.gnm1.ann1.LF5WZD Arachis hypogaea HOM05D007253 ORTHO05D009055 3.4e-29 132.1 99 80.8
MBI14_g31385_MAGBIO Magnolia biondii HOM05D007253 ORTHO05D009055 4.5e-29 131.7 95 83.2
Lalb_Chr23g0268151 Lupinus albus HOM05D007253 ORTHO05D009055 5.8e-29 131.3 105 75.2
Os09g0423700 Oryza sativa ssp. japonica HOM05D007253 ORTHO05D009055 9.9e-29 130.6 98 78.6
Sed0002011 Sechium edule HOM05D007253 ORTHO05D009055 9.9e-29 130.6 100 75.0
HPP92_010354 Vanilla planifolia HOM05D007253 ORTHO05D009055 9.9e-29 130.6 106 77.4
Lsat_1_v5_gn_6_77860 Lactuca sativa HOM05D007253 ORTHO05D009055 1.3e-28 130.2 101 80.2
SalBow8G5515 Salvia bowleyana HOM05D007253 ORTHO05D009055 1.3e-28 130.2 110 73.6
TPR.G1881 Trifolium pratense HOM05D007253 ORTHO05D009055 1.3e-28 130.2 99 80.8
ECA240G1715 Erigeron canadensis HOM05D001941 ORTHO05D002198 1.7e-28 129.8 104 76.0
PSO782G0429 Papaver somniferum HOM05D007253 ORTHO05D009055 2.2e-28 129.4 116 72.4
Potri.006G266800 Populus trichocarpa HOM05D007253 ORTHO05D009055 3.8e-28 128.6 98 81.6
SGA_v2.0_scaffold4G02163 Striga asiatica HOM05D007253 ORTHO05D009055 4.9e-28 128.3 100 77.0
EL10Ac2g02465 Beta vulgaris HOM05D007253 ORTHO05D009055 8.4e-28 127.5 103 74.8
Migut.E01444 Erythranthe guttata HOM05D007253 ORTHO05D009055 8.4e-28 127.5 102 78.4
arahy.Tifrunner.gnm1.ann1.2K72KI Arachis hypogaea HOM05D007253 ORTHO05D009055 1.1e-27 127.1 139 60.4
CAN.G285.13 Capsicum annuum HOM05D007253 ORTHO05D009055 1.4e-27 126.7 109 67.9
Glyma.17G221800 Glycine max HOM05D007253 ORTHO05D009055 2.4e-27 125.9 99 79.8
Potri.018G016400 Populus trichocarpa HOM05D007253 ORTHO05D009055 3.2e-27 125.6 97 80.4
MD08G1052200 Malus domestica HOM05D007253 ORTHO05D009055 4.2e-27 125.2 119 53.8
Oeu023241.1 Olea europaea HOM05D007253 ORTHO05D009055 4.2e-27 125.2 100 77.0
Solyc08g006620.3 Solanum lycopersicum HOM05D007253 ORTHO05D009055 9.3e-27 124.0 110 67.3
Sopen08g002570 Solanum pennellii HOM05D007253 ORTHO05D009055 9.3e-27 124.0 110 67.3
Phvul.009G086100 Phaseolus vulgaris HOM05D007253 ORTHO05D009055 1.2e-26 123.6 99 78.8
Glyma.04G059900 Glycine max HOM05D007253 ORTHO05D009055 2.1e-26 122.9 99 74.7
DCAR_000661 Daucus carota HOM05D007253 ORTHO05D009055 2.7e-26 122.5 100 78.0
MSTRG.13960 Avicennia marina HOM05D007253 ORTHO05D009055 3.5e-26 122.1 110 73.6
arahy.Tifrunner.gnm1.ann1.G7TND8 Arachis hypogaea HOM05D007253 ORTHO05D009055 4.6e-26 121.7 99 74.7
Glyma.14G104200 Glycine max HOM05D007253 ORTHO05D009055 4.6e-26 121.7 99 77.8
Glyma.06G060300 Glycine max HOM05D007253 ORTHO05D009055 6.0e-26 121.3 99 76.8
Zm00001eb313320 Zea mays HOM05D007253 ORTHO05D009055 1.0e-25 120.6 67 77.6
vmacro05116 Vaccinium macrocarpon HOM05D007253 ORTHO05D009055 1.8e-25 119.8 135 60.7
CDE02G4354 Ceratophyllum demersum HOM05D007253 ORTHO05D009055 3.0e-25 119.0 93 81.7
unitig_32.g11120 Utricularia gibba HOM05D007253 ORTHO05D009055 6.7e-25 117.9 98 75.5
SEGI_37228 Sequoiadendron giganteum HOM05D007253 ORTHO05D009055 1.3e-23 113.6 96 74.0
TAR383G0216 Trochodendron aralioides HOM05D007253 ORTHO05D009055 1.5e-21 106.7 77 83.1
AagrBONN_evm.TU.Sc2ySwM_117.2542 Anthoceros agrestis HOM05D007253 ORTHO05D009055 2.9e-20 102.4 89 71.9
Pp3c6_11160 Physcomitrium patens HOM05D007253 ORTHO05D009055 2.9e-20 102.4 104 63.5
AUR62032436 Chenopodium quinoa HOM05D007253 ORTHO05D009055 1.4e-19 100.1 77 77.9
Peaxi162Scf00045g01937 Petunia axillaris HOM05D007253 ORTHO05D009055 3.2e-19 99.0 73 84.9
Mapoly0121s0030 Marchantia polymorpha HOM05D007253 ORTHO05D009055 6.0e-18 94.7 89 66.3
PGSC0003DMG400026305 Solanum tuberosum HOM05D005612 ORTHO05D007014 1.3e-17 93.6 74 75.7
SMO196G0205 Selaginella moellendorffii HOM05D007253 ORTHO05D009055 5.1e-17 91.7 81 69.1
Gohir.A05G061100 Gossypium hirsutum HOM05D007253 ORTHO05D009055 1.1e-08 63.9 41 73.2


User provided reference genes

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