Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G24830 Arabidopsis thaliana HOM05D007019 ORTHO05D008398 1.0e-266 922.9 498 100.0
AL4G15870 Arabidopsis lyrata HOM05D007019 ORTHO05D008398 7.4e-225 783.9 500 86.0
Carub.0004s0445 Capsella rubella HOM05D007019 ORTHO05D008398 2.8e-216 755.4 503 82.9
CARHR294580 Cardamine hirsuta HOM05D007019 ORTHO05D008398 4.8e-216 754.6 506 82.2
Sp4g03850 Schrenkiella parvula HOM05D007019 ORTHO05D008398 2.2e-208 729.2 506 80.0
Thhalv10000137m.g Eutrema salsugineum HOM05D007019 ORTHO05D008398 1.3e-200 703.4 506 75.3
Aa31LG7G11570 Aethionema arabicum HOM05D007019 ORTHO05D008398 1.9e-188 662.9 511 72.8
A09p56090 Brassica napus HOM05D007019 ORTHO05D008398 2.8e-187 659.1 506 75.1
BraA09t41004Z Brassica rapa HOM05D007019 ORTHO05D008398 2.3e-186 656.0 506 73.7
A09p56030 Brassica napus HOM05D007019 ORTHO05D008398 1.5e-185 653.3 503 74.8
C08p39020 Brassica napus HOM05D007019 ORTHO05D008398 5.4e-183 644.8 506 74.5
BolC8t51475H Brassica oleracea HOM05D007019 ORTHO05D008398 5.4e-183 644.8 506 74.5
BcaC07g40903 Brassica carinata HOM05D007019 ORTHO05D008398 4.3e-172 608.6 502 71.5
THA.LOC104819948 Tarenaya hassleriana HOM05D007019 ORTHO05D008398 2.0e-161 573.2 518 65.1
CiPaw.07G232900 Carya illinoinensis HOM05D007019 ORTHO05D008398 1.3e-155 553.9 510 60.8
Manes.16G132200 Manihot esculenta HOM05D007019 ORTHO05D008398 6.2e-155 551.6 508 59.8
Prupe.1G396900 Prunus persica HOM05D007019 ORTHO05D008398 4.0e-154 548.9 516 60.3
Thecc.09G013400 Theobroma cacao HOM05D007019 ORTHO05D008398 1.5e-153 547.0 512 60.5
Cfa013011 Carpinus fangiana HOM05D007019 ORTHO05D008398 2.2e-152 543.1 516 59.9
Potri.018G016200 Populus trichocarpa HOM05D007019 ORTHO05D008398 3.8e-152 542.3 505 59.2
Gorai.009G064200 Gossypium raimondii HOM05D007019 ORTHO05D008398 1.4e-151 540.4 511 60.3
Lj6g0025581 Lotus japonicus HOM05D007019 ORTHO05D008398 2.1e-150 536.6 508 59.3
Duzib168G1437 Durio zibethinus HOM05D007019 ORTHO05D008398 2.7e-150 536.2 519 58.6
arahy.Tifrunner.gnm1.ann1.MG10WM Arachis hypogaea HOM05D007019 ORTHO05D008398 2.3e-149 533.1 513 58.7
arahy.Tifrunner.gnm1.ann1.SS16UG Arachis hypogaea HOM05D007019 ORTHO05D008398 2.3e-149 533.1 512 58.6
Eucgr.C04032 Eucalyptus grandis HOM05D007019 ORTHO05D008398 3.0e-149 532.7 512 59.2
COL.COLO4_18972 Corchorus olitorius HOM05D007019 ORTHO05D008398 1.9e-148 530.0 513 59.8
TWI32G0429 Tripterygium wilfordii HOM05D007019 ORTHO05D008398 4.8e-147 525.4 508 57.5
Ciclev10008089m.g Citrus clementina HOM05D007019 ORTHO05D008398 1.4e-146 523.9 509 57.2
Glyma.18G091000 Glycine max HOM05D007019 ORTHO05D008398 1.4e-146 523.9 512 58.8
Atru.chr7.2574 Acer truncatum HOM05D007019 ORTHO05D008398 1.8e-146 523.5 506 57.7
FvH4_2g41350 Fragaria vesca HOM05D007019 ORTHO05D008398 2.4e-146 523.1 505 57.4
Lj7A737G40 Lonicera japonica HOM05D007019 ORTHO05D008398 3.1e-146 522.7 523 56.2
Hma1.2p1_0737F.1_g210790 Hydrangea macrophylla HOM05D007019 ORTHO05D008398 1.2e-145 520.8 513 57.9
Actinidia14141 Actinidia chinensis HOM05D007019 ORTHO05D008398 1.3e-144 517.3 509 57.4
DCAR_003030 Daucus carota HOM05D007019 ORTHO05D008398 4.9e-144 515.4 506 57.5
Glyma.08G321000 Glycine max HOM05D007019 ORTHO05D008398 1.1e-143 514.2 514 57.0
QL02p018053 Quercus lobata HOM05D007019 ORTHO05D008398 1.1e-143 514.2 508 57.5
Gohir.A05G061000 Gossypium hirsutum HOM05D007019 ORTHO05D008398 1.4e-143 513.8 511 58.1
Gohir.D05G063200 Gossypium hirsutum HOM05D007019 ORTHO05D008398 7.1e-143 511.5 511 57.7
unitig_46.g18223 Utricularia gibba HOM05D007019 ORTHO05D008398 7.1e-143 511.5 500 57.0
Rhsim02G0217600 Rhododendron simsii HOM05D007019 ORTHO05D008398 9.3e-143 511.1 510 57.1
RcHm_v2.0_Chr6g0299181 Rosa chinensis HOM05D007019 ORTHO05D008398 1.6e-142 510.4 509 59.1
CANSAT25G0065 Cannabis sativa HOM05D007019 ORTHO05D008398 2.7e-142 509.6 509 56.2
Oeu021907.1 Olea europaea HOM05D007019 ORTHO05D008398 3.5e-142 509.2 506 56.7
Psat5g174160 Pisum sativum HOM05D007019 ORTHO05D008398 3.5e-142 509.2 509 55.8
PGR044G2245 Punica granatum HOM05D007019 ORTHO05D008398 6.0e-142 508.4 508 55.1
Medtr3g053700 Medicago truncatula HOM05D007019 ORTHO05D008398 1.3e-141 507.3 509 56.0
CSS0016918 Camellia sinensis var. sinensis HOM05D007019 ORTHO05D008398 2.3e-141 506.5 513 56.5
CSS0023374 Camellia sinensis var. sinensis HOM05D007019 ORTHO05D008398 2.3e-141 506.5 513 56.5
Lalb_Chr15g0081591 Lupinus albus HOM05D007019 ORTHO05D008398 2.3e-141 506.5 509 55.8
CDE04G0815 Ceratophyllum demersum HOM05D007019 ORTHO05D008398 5.1e-141 505.4 512 56.8
Cc00_g05220 Coffea canephora HOM05D007019 ORTHO05D008398 1.5e-140 503.8 507 56.6
MBI14_g16432_MAGBIO Magnolia biondii HOM05D007019 ORTHO05D008398 1.5e-140 503.8 508 57.1
PSO731G0070 Papaver somniferum HOM05D007019 ORTHO05D008398 1.5e-140 503.8 512 54.5
MELO3C011312.2 Cucumis melo HOM05D007019 ORTHO05D008398 1.3e-139 500.7 512 55.7
FAN27G2994 Fragaria x ananassa HOM05D007019 ORTHO05D008398 2.1e-139 500.0 491 56.8
PSO210G0129 Papaver somniferum HOM05D007019 ORTHO05D008398 1.1e-138 497.7 526 53.2
TPR.G32253 Trifolium pratense HOM05D007019 ORTHO05D008398 1.4e-138 497.3 511 56.0
Nn6g33490 Nelumbo nucifera HOM05D007019 ORTHO05D008398 2.4e-138 496.5 521 54.7
PGSC0003DMG400014784 Solanum tuberosum HOM05D007019 ORTHO05D008398 4.0e-138 495.7 511 56.0
Solyc08g068820.3 Solanum lycopersicum HOM05D007019 ORTHO05D008398 6.9e-138 495.0 510 56.5
MSTRG.1627 Avicennia marina HOM05D007019 ORTHO05D008398 1.5e-137 493.8 506 56.5
Phvul.006G047900 Phaseolus vulgaris HOM05D007019 ORTHO05D008398 2.0e-137 493.4 511 55.8
ATR0580G102 Amborella trichopoda HOM05D007019 ORTHO05D008398 3.4e-137 492.7 520 53.7
Sed0002524 Sechium edule HOM05D007019 ORTHO05D008398 3.4e-137 492.7 516 54.5
ClCG08G013800 Citrullus lanatus HOM05D007019 ORTHO05D008398 1.0e-136 491.1 510 54.9
HanXRQChr03g0084841 Helianthus annuus HOM05D007019 ORTHO05D008398 2.2e-136 490.0 530 51.9
CsaV3_2G032590 Cucumis sativus L. HOM05D007019 ORTHO05D008398 2.9e-136 489.6 510 54.7
Lsat_1_v5_gn_6_78060 Lactuca sativa HOM05D007019 ORTHO05D008398 8.4e-136 488.0 510 52.9
VMungo0540G1233 Vigna mungo HOM05D007019 ORTHO05D008398 8.4e-136 488.0 510 55.5
Aqoxy7G03288 Aquilegia oxysepala HOM05D007019 ORTHO05D008398 1.4e-135 487.3 511 55.6
SGA_v2.0_scaffold169G38600 Striga asiatica HOM05D007019 ORTHO05D008398 1.9e-135 486.9 507 57.4
EL10Ac2g02454 Beta vulgaris HOM05D007019 ORTHO05D008398 4.2e-135 485.7 555 52.1
Ca_26389_v3 Cicer arietinum L. HOM05D007019 ORTHO05D008398 4.6e-134 482.3 508 55.7
Sabra18G0019700 Salix brachista HOM05D007019 ORTHO05D008398 7.9e-134 481.5 534 52.6
Migut.E01445 Erythranthe guttata HOM05D007019 ORTHO05D008398 1.0e-133 481.1 506 53.8
Hund25606 Selenicereus undatus HOM05D007019 ORTHO05D008398 5.1e-133 478.8 528 52.8
Cpa.g.sc148.46 Carica papaya HOM05D007019 ORTHO05D008398 2.2e-128 463.4 507 53.3
Sc23g0006120 Simmondsia chinensis HOM05D007019 ORTHO05D008398 2.2e-128 463.4 526 53.6
ECA240G4302 Erigeron canadensis HOM05D007019 ORTHO05D008398 3.8e-128 462.6 532 50.9
CAN.G273.24 Capsicum annuum HOM05D007019 ORTHO05D008398 5.5e-127 458.8 511 51.7
FAN15G0718 Fragaria x ananassa HOM05D007019 ORTHO05D008398 1.6e-126 457.2 522 51.7
Zm00001eb257650 Zea mays HOM05D007019 ORTHO05D008398 4.6e-126 455.7 509 52.3
HPP92_010745 Vanilla planifolia HOM05D007019 ORTHO05D008398 6.3e-123 445.3 515 50.3
AUR62032443 Chenopodium quinoa HOM05D007019 ORTHO05D008398 8.2e-123 444.9 531 50.1
Sopen08g022560 Solanum pennellii HOM05D007019 ORTHO05D008398 5.3e-122 442.2 421 57.5
AUR62024776 Chenopodium quinoa HOM05D007019 ORTHO05D008398 1.5e-121 440.7 543 49.9
Nitab4.5_0000406g0110 Nicotiana tabacum HOM05D007019 ORTHO05D008398 2.7e-118 429.9 506 49.8
TAR636G0280 Trochodendron aralioides HOM05D007019 ORTHO05D008398 8.8e-117 424.9 360 61.7
Nitab4.5_0012106g0030 Nicotiana tabacum HOM05D007019 ORTHO05D008398 7.2e-111 405.2 510 48.0
SEGI_04420 Sequoiadendron giganteum HOM05D007019 ORTHO05D008398 3.0e-109 399.8 522 46.6
vmacro11274 Vaccinium macrocarpon HOM05D007019 ORTHO05D008398 1.5e-108 397.5 501 50.3
Dinv03401 Davidia involucrata HOM05D007019 ORTHO05D008398 1.0e-101 374.8 375 57.3
Mapoly0067s0020 Marchantia polymorpha HOM05D007019 ORTHO05D008398 1.4e-98 364.4 525 40.6
MD08G1051900 Malus domestica HOM05D007019 ORTHO05D008398 2.4e-98 363.6 372 56.5
Pp3c21_5730 Physcomitrium patens HOM05D007019 ORTHO05D008398 7.0e-98 362.1 526 42.2
SMO116G0382 Selaginella moellendorffii HOM05D007019 ORTHO05D008398 1.0e-96 358.2 502 45.4
Hma1.2p1_0737F.1_g210800 Hydrangea macrophylla HOM05D007019 ORTHO05D008398 1.7e-88 330.9 343 56.6
SHI21092 Sapria himalayana HOM05D007019 ORTHO05D008398 1.0e-77 295.0 588 37.2
Dinv10229 Davidia involucrata HOM05D007019 ORTHO05D008398 6.8e-69 265.8 365 47.7
AagrBONN_evm.TU.Sc2ySwM_117.1463 Anthoceros agrestis HOM05D007019 ORTHO05D008398 2.1e-57 227.6 370 43.0
GSVIVG01036005001 Vitis vinifera HOM05D007019 ORTHO05D008398 9.5e-55 218.8 189 61.9
CBR_g30106 Chara braunii HOM05D007019 ORTHO05D008398 3.1e-53 213.8 575 32.3
SalBow6G1623 Salvia bowleyana HOM05D007019 ORTHO05D008398 9.0e-37 159.1 208 49.5
Peaxi162Scf01419g00115 Petunia axillaris HOM05D007019 ORTHO05D008398 5.6e-31 139.8 146 53.4
SMO116G0105 Selaginella moellendorffii HOM05D007019 ORTHO05D008398 3.4e-28 130.6 290 36.6
Os02g0793000 Oryza sativa ssp. japonica HOM05D007019 ORTHO05D008398 2.5e-23 114.4 108 53.7
AagrBONN_evm.TU.Sc2ySwM_117.1462 Anthoceros agrestis HOM05D007019 ORTHO05D008398 1.0e-19 102.4 147 40.8
SMO269G0003 Selaginella moellendorffii HOM05D007019 ORTHO05D008398 5.5e-18 96.7 349 29.2
CSS0028433 Camellia sinensis var. sinensis HOM05D004574 ORTHO05D005612 3.0e-08 64.3 52 57.7
Actinidia21909 Actinidia chinensis HOM05D004574 ORTHO05D005612 3.3e-07 60.8 62 45.2
DCAR_017762 Daucus carota HOM05D004574 ORTHO05D005612 7.4e-07 59.7 74 41.9
Lsat_1_v5_gn_5_90461 Lactuca sativa HOM05D004574 ORTHO05D005612 7.4e-07 59.7 49 57.1
Lj9A709T23 Lonicera japonica HOM05D004574 ORTHO05D005612 1.3e-06 58.9 55 49.1
Nn2g12259 Nelumbo nucifera HOM05D004574 ORTHO05D005612 1.6e-06 58.5 69 43.5
Sabra06G0145700 Salix brachista HOM05D004574 ORTHO05D005612 1.6e-06 58.5 71 45.1
TWI34G0786 Tripterygium wilfordii HOM05D004574 ORTHO05D005612 2.2e-06 58.2 46 58.7
Actinidia04251 Actinidia chinensis HOM05D004574 ORTHO05D005612 3.7e-06 57.4 49 53.1
Ciclev10007567m.g Citrus clementina HOM05D004574 ORTHO05D005612 3.7e-06 57.4 46 58.7
Cc06_g07390 Coffea canephora HOM05D004574 ORTHO05D005612 3.7e-06 57.4 52 50.0
CANSAT11G2415 Cannabis sativa HOM05D004574 ORTHO05D005612 4.8e-06 57.0 65 46.2
Cfa020884 Carpinus fangiana HOM05D004574 ORTHO05D005612 4.8e-06 57.0 66 42.4
Haze_19313 Corylus avellana HOM05D004574 ORTHO05D005612 4.8e-06 57.0 56 46.4
ECA234G1322 Erigeron canadensis HOM05D004574 ORTHO05D005612 4.8e-06 57.0 49 53.1
CiPaw.16G117400 Carya illinoinensis HOM05D004574 ORTHO05D005612 6.3e-06 56.6 46 56.5
DCAR_014931 Daucus carota HOM05D004574 ORTHO05D005612 6.3e-06 56.6 49 53.1
Glyma.17G104500 Glycine max HOM05D004574 ORTHO05D005612 6.3e-06 56.6 89 43.8
HanXRQChr12g0357011 Helianthus annuus HOM05D004574 ORTHO05D005612 6.3e-06 56.6 57 47.4
MD02G1012700 Malus domestica HOM05D004574 ORTHO05D005612 6.3e-06 56.6 55 49.1
Oeu040778.1 Olea europaea HOM05D004574 ORTHO05D005612 6.3e-06 56.6 53 49.1
Prupe.7G253700 Prunus persica HOM05D004574 ORTHO05D005612 6.3e-06 56.6 46 56.5
Eucgr.L03484 Eucalyptus grandis HOM05D004574 ORTHO05D005612 8.2e-06 56.2 47 53.2
Glyma.13G156900 Glycine max HOM05D004574 ORTHO05D005612 8.2e-06 56.2 89 42.7
MD15G1158500 Malus domestica HOM05D004574 ORTHO05D005612 8.2e-06 56.2 55 49.1


User provided reference genes

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