Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G24205 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 4.6e-61 237.7 115 100.0
AT5G36658 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 3.7e-26 121.7 111 55.0
AT5G44495 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 3.7e-26 121.7 112 50.9
AT3G42565 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 5.3e-25 117.9 112 52.7
AT5G36480 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 5.3e-25 117.9 112 52.7
AT5G36661 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 5.3e-25 117.9 111 52.3
AT5G36738 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 5.3e-25 117.9 111 52.3
AT5G36350 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 6.9e-25 117.5 112 52.7
AT5G36360 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 6.9e-25 117.5 112 52.7
AT5G36380 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 6.9e-25 117.5 112 52.7
AT5G36390 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 6.9e-25 117.5 112 52.7
AT5G36400 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 6.9e-25 117.5 112 52.7
AT5G36410 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 6.9e-25 117.5 112 52.7
AT5G36420 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 6.9e-25 117.5 112 52.7
AT5G36430 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 6.9e-25 117.5 112 52.7
AT5G36440 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 6.9e-25 117.5 112 52.7
AT5G36450 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 6.9e-25 117.5 112 52.7
AT5G36460 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 6.9e-25 117.5 112 52.7
AT5G36470 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 6.9e-25 117.5 112 52.7
AT5G36520 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 6.9e-25 117.5 112 52.7
AT5G36370 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 1.2e-24 116.7 112 52.7
AT5G36500 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 1.2e-24 116.7 112 51.8
AT5G36550 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 1.2e-24 116.7 112 51.8
Sp1g35035 Schrenkiella parvula HOM05D001603 ORTHO05D001393 1.2e-24 116.7 115 52.2
A08p06940 Brassica napus HOM05D001603 ORTHO05D001393 1.5e-24 116.3 113 53.1
AT5G36490 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 2.0e-24 115.9 112 51.8
AT5G36540 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 3.4e-24 115.2 112 51.8
CARHR042770 Cardamine hirsuta HOM05D001603 ORTHO05D001393 5.9e-24 114.4 114 47.4
AT5G36320 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 7.6e-24 114.0 111 51.4
AT5G36662 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 5.0e-23 111.3 111 52.3
AT5G36739 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 5.0e-23 111.3 111 52.3
CARHR016560 Cardamine hirsuta HOM05D001603 ORTHO05D001393 6.5e-23 110.9 112 50.0
AT4G09545 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 1.1e-22 110.2 116 50.9
AT5G36310 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 2.5e-22 109.0 112 50.9
AT5G36340 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 2.5e-22 109.0 112 50.9
AT5G51105 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 3.2e-22 108.6 113 48.7
BcaC07g37175 Brassica carinata HOM05D001603 ORTHO05D001393 5.5e-22 107.8 103 51.5
AT5G42895 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 1.2e-21 106.7 112 50.9
A08p05250 Brassica napus HOM05D001603 ORTHO05D001393 2.1e-21 105.9 112 47.3
CARHR187420 Cardamine hirsuta HOM05D001603 ORTHO05D001393 2.1e-21 105.9 112 48.2
AT5G36330 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 2.7e-21 105.5 111 49.5
A08p05260 Brassica napus HOM05D001603 ORTHO05D001393 2.7e-21 105.5 112 48.2
A03p16350 Brassica napus HOM05D001603 ORTHO05D001393 3.5e-21 105.1 129 43.4
C08p05570 Brassica napus HOM05D001603 ORTHO05D001393 1.3e-20 103.2 112 47.3
A08p05280 Brassica napus HOM05D001603 ORTHO05D001393 3.0e-20 102.1 109 48.6
CARHR181490 Cardamine hirsuta HOM05D001603 ORTHO05D001393 3.9e-20 101.7 113 47.8
AT5G36659 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 8.7e-20 100.5 94 53.2
A08p05270 Brassica napus HOM05D001603 ORTHO05D001393 1.1e-19 100.1 109 47.7
A08p05320 Brassica napus HOM05D001603 ORTHO05D001393 1.1e-19 100.1 109 47.7
A08p06920 Brassica napus HOM05D001603 ORTHO05D001393 1.9e-19 99.4 109 48.6
BcaC07g37178 Brassica carinata HOM05D001603 ORTHO05D001393 4.3e-19 98.2 103 46.6
BcaC07g37176 Brassica carinata HOM05D001603 ORTHO05D001393 5.7e-19 97.8 103 46.6
CARHR283690 Cardamine hirsuta HOM05D001603 ORTHO05D001393 5.7e-19 97.8 113 45.1
BcaC07g37174 Brassica carinata HOM05D001603 ORTHO05D001393 7.4e-19 97.4 103 46.6
BcaC07g37177 Brassica carinata HOM05D001603 ORTHO05D001393 7.4e-19 97.4 103 46.6
A08p06950 Brassica napus HOM05D001603 ORTHO05D001393 1.3e-18 96.7 112 45.5
BcaC01g06071 Brassica carinata HOM05D001603 ORTHO05D001393 2.2e-18 95.9 135 40.0
BcaC07g37231 Brassica carinata HOM05D001603 ORTHO05D001393 3.7e-18 95.1 103 45.6
C03p19230 Brassica napus HOM05D001603 ORTHO05D001393 4.8e-18 94.7 135 39.3
BcaC07g37179 Brassica carinata HOM05D001603 ORTHO05D001393 5.3e-17 91.3 104 45.2
AT5G36657 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 6.9e-17 90.9 70 57.1
A08p06960 Brassica napus HOM05D001603 ORTHO05D001393 6.9e-17 90.9 102 46.1
AL8G25360 Arabidopsis lyrata HOM05D001603 ORTHO05D001393 9.0e-17 90.5 128 39.8
A08p06930 Brassica napus HOM05D001603 ORTHO05D001393 1.5e-16 89.7 109 45.0
Aa31sc88G60 Aethionema arabicum HOM05D001603 ORTHO05D001393 2.0e-16 89.4 108 44.4
C08p05560 Brassica napus HOM05D001603 ORTHO05D001393 2.6e-16 89.0 100 46.0
A08p05310 Brassica napus HOM05D001603 ORTHO05D001393 4.5e-16 88.2 112 41.1
A08p05290 Brassica napus HOM05D001603 ORTHO05D001393 1.0e-15 87.0 94 47.9
CARHR256980 Cardamine hirsuta HOM05D001603 ORTHO05D001393 2.2e-15 85.9 122 40.2
CARHR274670 Cardamine hirsuta HOM05D001603 ORTHO05D001393 8.5e-15 84.0 107 46.7
A08p05300 Brassica napus HOM05D001603 ORTHO05D001393 3.2e-14 82.0 109 41.3
C08p05590 Brassica napus HOM05D001603 ORTHO05D001393 3.6e-13 78.6 112 37.5
A03p16340 Brassica napus HOM05D001603 ORTHO05D001393 1.0e-12 77.0 113 37.2
BraA03t10924Z Brassica rapa HOM05D001603 ORTHO05D001393 1.0e-12 77.0 113 37.2
BcaC01g06102 Brassica carinata HOM05D001603 ORTHO05D001393 1.4e-12 76.6 146 34.2
BcaC01g06105 Brassica carinata HOM05D001603 ORTHO05D001393 1.4e-12 76.6 146 34.2
C08p05580 Brassica napus HOM05D001603 ORTHO05D001393 3.9e-12 75.1 77 45.5
AT5G60964 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 5.1e-12 74.7 109 36.7
BcaC01g06072 Brassica carinata HOM05D001603 ORTHO05D001393 3.3e-11 72.0 69 44.9
BolC3t14309H Brassica oleracea HOM05D001603 ORTHO05D001393 3.3e-11 72.0 69 44.9
C08p05610 Brassica napus HOM05D001603 ORTHO05D001393 5.7e-11 71.2 109 37.6
C08p06520 Brassica napus HOM05D001603 ORTHO05D001393 9.7e-11 70.5 56 58.9
AT5G60945 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 1.3e-10 70.1 111 34.2
C03p19220 Brassica napus HOM05D001603 ORTHO05D001393 1.3e-10 70.1 69 43.5
CARHR256970 Cardamine hirsuta HOM05D001603 ORTHO05D001393 2.2e-10 69.3 113 38.1
THA.LOC104811298 Tarenaya hassleriana HOM05D001603 ORTHO05D001393 2.4e-09 65.9 109 38.5
BcaC06g33682 Brassica carinata HOM05D001603 ORTHO05D001393 2.0e-08 62.8 65 47.7
C07p38140 Brassica napus HOM05D001603 ORTHO05D001393 2.0e-08 62.8 65 47.7
Carub.0008s1435 Capsella rubella HOM05D001603 ORTHO05D001393 2.0e-08 62.8 67 44.8
CARHR154350 Cardamine hirsuta HOM05D001603 ORTHO05D001393 2.0e-08 62.8 65 44.6
Thhalv10016069m.g Eutrema salsugineum HOM05D001603 ORTHO05D001393 2.6e-08 62.4 105 35.2
Sp6g09890 Schrenkiella parvula HOM05D001603 ORTHO05D001393 2.6e-08 62.4 105 37.1
A06p40030 Brassica napus HOM05D001603 ORTHO05D001393 4.5e-08 61.6 107 38.3
BraA06t26918Z Brassica rapa HOM05D001603 ORTHO05D001393 4.5e-08 61.6 107 38.3
Carub.0008s1450 Capsella rubella HOM05D001603 ORTHO05D001393 4.5e-08 61.6 67 47.8
Thhalv10005396m.g Eutrema salsugineum HOM05D001603 ORTHO05D001393 5.9e-08 61.2 109 41.3
Thhalv10005158m.g Eutrema salsugineum HOM05D001603 ORTHO05D001393 7.7e-08 60.8 67 44.8
BolC7t44336H Brassica oleracea HOM05D001603 ORTHO05D001393 1.0e-07 60.5 107 37.4
Carub.0004s0795 Capsella rubella HOM05D001603 ORTHO05D001393 1.3e-07 60.1 109 39.4
Sp6g15130 Schrenkiella parvula HOM05D001603 ORTHO05D001393 1.3e-07 60.1 116 38.8
BcaB01g04253 Brassica carinata HOM05D001603 ORTHO05D001393 1.7e-07 59.7 114 33.3
THA.LOC104807824 Tarenaya hassleriana HOM05D001603 ORTHO05D001393 1.7e-07 59.7 108 37.0
CAN.G184.54 Capsicum annuum HOM05D001603 ORTHO05D001393 2.2e-07 59.3 106 36.8
THA.LOC104809637 Tarenaya hassleriana HOM05D001603 ORTHO05D001393 2.2e-07 59.3 110 35.5
Aa31LG5G23090 Aethionema arabicum HOM05D001603 ORTHO05D001393 2.9e-07 58.9 108 36.1
AL8G27490 Arabidopsis lyrata HOM05D001603 ORTHO05D001393 2.9e-07 58.9 114 40.4
AL8G27510 Arabidopsis lyrata HOM05D001603 ORTHO05D001393 2.9e-07 58.9 107 38.3
AT5G52965 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 2.9e-07 58.9 107 37.4
AT5G52975 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 2.9e-07 58.9 117 37.6
BcaC03g14478 Brassica carinata HOM05D001603 ORTHO05D001393 3.8e-07 58.5 107 34.6
A02p11400 Brassica napus HOM05D001603 ORTHO05D001393 3.8e-07 58.5 109 33.0
CARHR265940 Cardamine hirsuta HOM05D001603 ORTHO05D001393 3.8e-07 58.5 110 37.3
COL.COLO4_33373 Corchorus olitorius HOM05D001603 ORTHO05D001393 3.8e-07 58.5 113 32.7
COL.COLO4_33374 Corchorus olitorius HOM05D001603 ORTHO05D001393 3.8e-07 58.5 113 32.7
C02p19000 Brassica napus HOM05D001603 ORTHO05D001393 5.0e-07 58.2 107 34.6
Sc18g0000140 Simmondsia chinensis HOM05D001603 ORTHO05D001393 5.0e-07 58.2 107 33.6
THA.LOC104807823 Tarenaya hassleriana HOM05D001603 ORTHO05D001393 5.0e-07 58.2 109 33.0
AL8G27470 Arabidopsis lyrata HOM05D001603 ORTHO05D001393 6.5e-07 57.8 117 39.3
AT2G14378 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 6.5e-07 57.8 106 35.8
BcaC03g14474 Brassica carinata HOM05D001603 ORTHO05D001393 6.5e-07 57.8 107 33.6
C02p18930 Brassica napus HOM05D001603 ORTHO05D001393 6.5e-07 57.8 107 33.6
Thhalv10029475m.g Eutrema salsugineum HOM05D001603 ORTHO05D001393 6.5e-07 57.8 111 36.0
BcaC03g14476 Brassica carinata HOM05D001603 ORTHO05D001393 8.5e-07 57.4 107 33.6
BcaC03g14477 Brassica carinata HOM05D001603 ORTHO05D001393 8.5e-07 57.4 107 33.6
BcaC03g14480 Brassica carinata HOM05D001603 ORTHO05D001393 8.5e-07 57.4 107 33.6
A02p11420 Brassica napus HOM05D001603 ORTHO05D001393 8.5e-07 57.4 107 33.6
A02p11430 Brassica napus HOM05D001603 ORTHO05D001393 8.5e-07 57.4 107 33.6
A02p11440 Brassica napus HOM05D001603 ORTHO05D001393 8.5e-07 57.4 107 33.6
C02p18950 Brassica napus HOM05D001603 ORTHO05D001393 8.5e-07 57.4 107 33.6
C02p18980 Brassica napus HOM05D001603 ORTHO05D001393 8.5e-07 57.4 107 33.6
C02p19030 Brassica napus HOM05D001603 ORTHO05D001393 8.5e-07 57.4 107 33.6
BolC2t08037H Brassica oleracea HOM05D001603 ORTHO05D001393 8.5e-07 57.4 107 33.6
BolC2t08038H Brassica oleracea HOM05D001603 ORTHO05D001393 8.5e-07 57.4 107 33.6
BraA02t06205Z Brassica rapa HOM05D001603 ORTHO05D001393 8.5e-07 57.4 107 33.6
BraA02t06211Z Brassica rapa HOM05D001603 ORTHO05D001393 8.5e-07 57.4 107 33.6
CARHR181480 Cardamine hirsuta HOM05D001603 ORTHO05D001393 8.5e-07 57.4 80 47.5
CARHR277370 Cardamine hirsuta HOM05D001603 ORTHO05D001393 8.5e-07 57.4 110 36.4
RcHm_v2.0_Chr2g0131241 Rosa chinensis HOM05D001603 ORTHO05D001393 8.5e-07 57.4 113 34.5
AL4G21270 Arabidopsis lyrata HOM05D001603 ORTHO05D001393 1.1e-06 57.0 111 35.1
AL8G40580 Arabidopsis lyrata HOM05D001603 ORTHO05D001393 1.1e-06 57.0 65 43.1
AT5G53742 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 1.1e-06 57.0 66 43.9
BcaB07g29691 Brassica carinata HOM05D001603 ORTHO05D001393 1.1e-06 57.0 65 41.5
BcaC03g14475 Brassica carinata HOM05D001603 ORTHO05D001393 1.1e-06 57.0 107 33.6
A02p42780 Brassica napus HOM05D001603 ORTHO05D001393 1.1e-06 57.0 65 41.5
C02p18990 Brassica napus HOM05D001603 ORTHO05D001393 1.1e-06 57.0 107 33.6
BraA02t09204Z Brassica rapa HOM05D001603 ORTHO05D001393 1.1e-06 57.0 65 41.5
Thhalv10005546m.g Eutrema salsugineum HOM05D001603 ORTHO05D001393 1.1e-06 57.0 109 38.5
Aqoxy6G02756 Aquilegia oxysepala HOM05D001603 ORTHO05D001393 1.4e-06 56.6 106 36.8
Aqoxy6G02757 Aquilegia oxysepala HOM05D001603 ORTHO05D001393 1.4e-06 56.6 105 35.2
BolC2t08036H Brassica oleracea HOM05D001603 ORTHO05D001393 1.4e-06 56.6 116 35.3
BraA02t06212Z Brassica rapa HOM05D001603 ORTHO05D001393 1.4e-06 56.6 107 33.6
CARHR274680 Cardamine hirsuta HOM05D001603 ORTHO05D001393 1.4e-06 56.6 58 48.3
PGSC0003DMG400004472 Solanum tuberosum HOM05D001603 ORTHO05D001393 1.4e-06 56.6 111 34.2
AT2G27315 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 1.9e-06 56.2 65 46.2
C02p18970 Brassica napus HOM05D001603 ORTHO05D001393 1.9e-06 56.2 107 33.6
Carub.0008s0802 Capsella rubella HOM05D001603 ORTHO05D001393 1.9e-06 56.2 108 36.1
Carub.0008s1315 Capsella rubella HOM05D001603 ORTHO05D001393 1.9e-06 56.2 62 46.8
Carub.0008s1317 Capsella rubella HOM05D001603 ORTHO05D001393 1.9e-06 56.2 108 33.3
Carub.0008s1404 Capsella rubella HOM05D001603 ORTHO05D001393 1.9e-06 56.2 107 32.7
CARHR119910 Cardamine hirsuta HOM05D001603 ORTHO05D001393 1.9e-06 56.2 114 36.8
FAN17G1385 Fragaria x ananassa HOM05D001603 ORTHO05D001393 1.9e-06 56.2 70 44.3
A02p42790 Brassica napus HOM05D001603 ORTHO05D001393 2.5e-06 55.8 105 33.3
BraA02t06206Z Brassica rapa HOM05D001603 ORTHO05D001393 2.5e-06 55.8 105 32.4
BraA02t06208Z Brassica rapa HOM05D001603 ORTHO05D001393 2.5e-06 55.8 107 33.6
BraA02t09205Z Brassica rapa HOM05D001603 ORTHO05D001393 2.5e-06 55.8 105 33.3
RcHm_v2.0_Chr2g0131141 Rosa chinensis HOM05D001603 ORTHO05D001393 2.5e-06 55.8 69 40.6
C02p62770 Brassica napus HOM05D001603 ORTHO05D001393 3.2e-06 55.5 65 40.0
BolC2t12348H Brassica oleracea HOM05D001603 ORTHO05D001393 3.2e-06 55.5 65 40.0
Carub.0008s1421 Capsella rubella HOM05D001603 ORTHO05D001393 3.2e-06 55.5 89 34.8
CAN.G184.41 Capsicum annuum HOM05D001603 ORTHO05D001393 3.2e-06 55.5 110 33.6
CARHR265960 Cardamine hirsuta HOM05D001603 ORTHO05D001393 3.2e-06 55.5 112 34.8
CARHR267050 Cardamine hirsuta HOM05D001603 ORTHO05D001393 3.2e-06 55.5 67 43.3
THA.LOC104811131 Tarenaya hassleriana HOM05D001603 ORTHO05D001393 3.2e-06 55.5 64 43.8
THA.LOC104811299 Tarenaya hassleriana HOM05D001603 ORTHO05D001393 3.2e-06 55.5 64 43.8
BraA02t06209Z Brassica rapa HOM05D001603 ORTHO05D001393 4.2e-06 55.1 107 33.6
CARHR157430 Cardamine hirsuta HOM05D001603 ORTHO05D001393 4.2e-06 55.1 106 33.0
THA.LOC104807891 Tarenaya hassleriana HOM05D001603 ORTHO05D001393 4.2e-06 55.1 108 36.1
AL7G16040 Arabidopsis lyrata HOM05D001603 ORTHO05D001393 5.5e-06 54.7 106 34.9
BcaB07g30090 Brassica carinata HOM05D001603 ORTHO05D001393 5.5e-06 54.7 112 33.9
Carub.0008s2423 Capsella rubella HOM05D001603 ORTHO05D001393 5.5e-06 54.7 105 34.3
CAN.G467.8 Capsicum annuum HOM05D004213 ORTHO05D005091 5.5e-06 54.7 95 35.8
FAN23G0346 Fragaria x ananassa HOM05D001603 ORTHO05D001393 5.5e-06 54.7 69 40.6
FAN23G1220 Fragaria x ananassa HOM05D001603 ORTHO05D001393 5.5e-06 54.7 69 40.6
RcHm_v2.0_Chr2g0087141 Rosa chinensis HOM05D001603 ORTHO05D001393 5.5e-06 54.7 96 38.5
THA.LOC104809119 Tarenaya hassleriana HOM05D001603 ORTHO05D001393 5.5e-06 54.7 92 33.7
FvH4_4g12560 Fragaria vesca HOM05D001603 ORTHO05D001393 7.2e-06 54.3 70 41.4
FAN12G3546 Fragaria x ananassa HOM05D001603 ORTHO05D001393 7.2e-06 54.3 70 41.4
FAN22G0761 Fragaria x ananassa HOM05D001603 ORTHO05D001393 9.4e-06 53.9 70 41.4
RcHm_v2.0_Chr2g0087131 Rosa chinensis HOM05D001603 ORTHO05D001393 9.4e-06 53.9 96 36.5


User provided reference genes

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