Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G24020 Arabidopsis thaliana HOM05D004106 ORTHO05D004381 3.8e-94 348.2 183 100.0
AL4G14070 Arabidopsis lyrata HOM05D004106 ORTHO05D004381 5.4e-88 327.8 183 95.6
Carub.0004s0318 Capsella rubella HOM05D004106 ORTHO05D004381 3.4e-82 308.5 188 88.3
CARHR184720 Cardamine hirsuta HOM05D004106 ORTHO05D004381 7.5e-82 307.4 187 89.3
Sp4g02930 Schrenkiella parvula HOM05D004106 ORTHO05D004381 1.4e-75 286.6 187 85.6
Thhalv10000343m.g Eutrema salsugineum HOM05D004106 ORTHO05D004381 2.9e-73 278.9 180 87.2
BcaC07g40965 Brassica carinata HOM05D004106 ORTHO05D004381 2.7e-71 272.3 186 83.3
A09p56640 Brassica napus HOM05D004106 ORTHO05D004381 3.5e-71 271.9 187 82.9
BraA09t41055Z Brassica rapa HOM05D004106 ORTHO05D004381 4.6e-71 271.6 187 82.9
C08p39590 Brassica napus HOM05D004106 ORTHO05D004381 1.3e-70 270.0 187 82.4
BolC8t51532H Brassica oleracea HOM05D004106 ORTHO05D004381 1.3e-70 270.0 187 82.4
Aa31LG2G19880 Aethionema arabicum HOM05D004106 ORTHO05D004381 9.5e-69 263.8 189 79.4
THA.LOC104803919 Tarenaya hassleriana HOM05D004106 ORTHO05D004381 8.0e-68 260.8 189 76.7
THA.LOC104819993 Tarenaya hassleriana HOM05D004106 ORTHO05D004381 8.0e-68 260.8 188 77.7
A08p19160 Brassica napus HOM05D004106 ORTHO05D004381 7.5e-66 254.2 183 76.5
Sp7g28490 Schrenkiella parvula HOM05D004106 ORTHO05D004381 9.8e-66 253.8 183 77.0
AT4G30620 Arabidopsis thaliana HOM05D004106 ORTHO05D004381 2.2e-65 252.7 185 77.8
Carub.0007s0995 Capsella rubella HOM05D004106 ORTHO05D004381 4.9e-65 251.5 183 78.1
BraA08t33877Z Brassica rapa HOM05D004106 ORTHO05D004381 2.4e-64 249.2 186 76.9
Thhalv10026346m.g Eutrema salsugineum HOM05D004106 ORTHO05D004381 2.4e-64 249.2 187 77.5
AL7G21520 Arabidopsis lyrata HOM05D004106 ORTHO05D004381 4.1e-64 248.4 184 76.6
BcaB03g12652 Brassica carinata HOM05D004106 ORTHO05D004381 1.2e-63 246.9 180 76.7
BolC3t21168H Brassica oleracea HOM05D004106 ORTHO05D004381 2.1e-60 236.1 190 73.7
Aa31LG7G12810 Aethionema arabicum HOM05D004106 ORTHO05D004381 3.4e-58 228.8 211 67.3
C03p88620 Brassica napus HOM05D004106 ORTHO05D004381 7.5e-58 227.6 183 73.2
Ciclev10009489m.g Citrus clementina HOM05D004106 ORTHO05D004381 7.5e-58 227.6 195 69.2
Potri.018G105600 Populus trichocarpa HOM05D004106 ORTHO05D004381 7.5e-58 227.6 174 71.8
Cpa.g.sc46.167 Carica papaya HOM05D004106 ORTHO05D004381 9.9e-58 227.3 187 70.6
Atru.chr7.22 Acer truncatum HOM05D004106 ORTHO05D004381 2.2e-57 226.1 188 68.6
Manes.14G144700 Manihot esculenta HOM05D004106 ORTHO05D004381 8.3e-57 224.2 166 73.5
QL02p093501 Quercus lobata HOM05D004106 ORTHO05D004381 1.2e-55 220.3 163 74.8
Actinidia14131 Actinidia chinensis HOM05D004106 ORTHO05D004381 4.6e-55 218.4 151 77.5
CiPaw.15G167000 Carya illinoinensis HOM05D004106 ORTHO05D004381 4.6e-55 218.4 158 76.6
arahy.Tifrunner.gnm1.ann1.J1V5JT Arachis hypogaea HOM05D004106 ORTHO05D004381 6.0e-55 218.0 165 72.7
MD08G1056000 Malus domestica HOM05D004106 ORTHO05D004381 7.8e-55 217.6 149 77.9
arahy.Tifrunner.gnm1.ann1.U84FQB Arachis hypogaea HOM05D004106 ORTHO05D004381 1.0e-54 217.2 140 82.9
Glyma.06G225800 Glycine max HOM05D004106 ORTHO05D004381 1.3e-54 216.9 147 81.6
ATR0580G427 Amborella trichopoda HOM05D004106 ORTHO05D004381 1.7e-54 216.5 149 77.9
CSS0032495 Camellia sinensis var. sinensis HOM05D004106 ORTHO05D004381 1.7e-54 216.5 140 82.1
Hund02987 Selenicereus undatus HOM05D004106 ORTHO05D004381 1.7e-54 216.5 148 79.1
Cc06_g14830 Coffea canephora HOM05D004106 ORTHO05D004381 3.0e-54 215.7 192 68.8
Eucgr.C02535 Eucalyptus grandis HOM05D004106 ORTHO05D004381 3.0e-54 215.7 149 74.5
HanXRQChr03g0065371 Helianthus annuus HOM05D004106 ORTHO05D004381 3.0e-54 215.7 148 77.7
Eucgr.C02498 Eucalyptus grandis HOM05D004106 ORTHO05D004381 3.9e-54 215.3 149 73.8
Phvul.005G005700 Phaseolus vulgaris HOM05D004106 ORTHO05D004381 3.9e-54 215.3 147 79.6
VMungo1080G0447 Vigna mungo HOM05D004106 ORTHO05D004381 3.9e-54 215.3 147 80.3
Oeu006863.1 Olea europaea HOM05D004106 ORTHO05D004381 5.1e-54 214.9 180 70.6
Dinv08223 Davidia involucrata HOM05D004106 ORTHO05D004381 6.6e-54 214.5 179 70.4
ECA240G3283 Erigeron canadensis HOM05D004106 ORTHO05D004381 6.6e-54 214.5 176 71.0
Duzib168G0532 Durio zibethinus HOM05D004106 ORTHO05D004381 8.6e-54 214.2 144 79.9
Nitab4.5_0003563g0010 Nicotiana tabacum HOM05D004106 ORTHO05D004381 8.6e-54 214.2 169 72.2
Prupe.1G394300 Prunus persica HOM05D004106 ORTHO05D004381 8.6e-54 214.2 167 73.7
RcHm_v2.0_Chr6g0299371 Rosa chinensis HOM05D004106 ORTHO05D004381 8.6e-54 214.2 186 66.7
GSVIVG01023623001 Vitis vinifera HOM05D004106 ORTHO05D004381 1.1e-53 213.8 180 71.1
Glyma.12G156200 Glycine max HOM05D004106 ORTHO05D004381 1.5e-53 213.4 147 80.3
TAR626G0743 Trochodendron aralioides HOM05D004106 ORTHO05D004381 1.5e-53 213.4 151 79.5
Migut.E01458 Erythranthe guttata HOM05D004106 ORTHO05D004381 1.9e-53 213.0 139 79.9
FAN27G3303 Fragaria x ananassa HOM05D004106 ORTHO05D004381 1.9e-53 213.0 184 66.8
Gohir.A05G053000 Gossypium hirsutum HOM05D004106 ORTHO05D004381 1.9e-53 213.0 188 66.0
Oeu048547.1 Olea europaea HOM05D004106 ORTHO05D004381 1.9e-53 213.0 141 82.3
Medtr0380s0040 Medicago truncatula HOM05D004106 ORTHO05D004381 2.5e-53 212.6 139 80.6
EL10Ac2g02497 Beta vulgaris HOM05D004106 ORTHO05D004381 3.3e-53 212.2 139 79.1
COL.COLO4_18821 Corchorus olitorius HOM05D004106 ORTHO05D004381 3.3e-53 212.2 144 77.8
Duzib150G0841 Durio zibethinus HOM05D004106 ORTHO05D004381 3.3e-53 212.2 147 81.6
PSO339G2511 Papaver somniferum HOM05D004106 ORTHO05D004381 3.3e-53 212.2 145 78.6
PSO384G4038 Papaver somniferum HOM05D004106 ORTHO05D004381 3.3e-53 212.2 145 78.6
CANSAT11G1220 Cannabis sativa HOM05D004106 ORTHO05D004381 4.3e-53 211.8 168 70.8
FvH4_2g41160 Fragaria vesca HOM05D004106 ORTHO05D004381 4.3e-53 211.8 184 66.3
Gohir.A07G027300 Gossypium hirsutum HOM05D004106 ORTHO05D004381 4.3e-53 211.8 188 66.5
Gohir.D05G054601 Gossypium hirsutum HOM05D004106 ORTHO05D004381 4.3e-53 211.8 166 71.7
Gorai.001G032700 Gossypium raimondii HOM05D004106 ORTHO05D004381 4.3e-53 211.8 188 66.5
Gorai.009G056300 Gossypium raimondii HOM05D004106 ORTHO05D004381 4.3e-53 211.8 166 71.7
Nitab4.5_0002011g0110 Nicotiana tabacum HOM05D004106 ORTHO05D004381 4.3e-53 211.8 170 70.6
Solyc08g006780.3 Solanum lycopersicum HOM05D004106 ORTHO05D004381 4.3e-53 211.8 152 76.3
Dinv08178 Davidia involucrata HOM05D004106 ORTHO05D004381 5.6e-53 211.5 178 68.5
FAN15G2986 Fragaria x ananassa HOM05D004106 ORTHO05D004381 9.5e-53 210.7 184 66.3
Lalb_Chr13g0300831 Lupinus albus HOM05D004106 ORTHO05D004381 9.5e-53 210.7 140 80.0
CsaV3_1G029020 Cucumis sativus L. HOM05D004106 ORTHO05D004381 1.6e-52 209.9 146 77.4
HanXRQChr09g0244601 Helianthus annuus HOM05D004106 ORTHO05D004381 1.6e-52 209.9 189 65.6
Sopen08g002730 Solanum pennellii HOM05D004106 ORTHO05D004381 1.6e-52 209.9 168 70.8
PGSC0003DMG400026299 Solanum tuberosum HOM05D004106 ORTHO05D004381 1.6e-52 209.9 168 70.2
Peaxi162Scf00045g02039 Petunia axillaris HOM05D004106 ORTHO05D004381 2.8e-52 209.1 174 70.1
Ca_21133_v3 Cicer arietinum L. HOM05D004106 ORTHO05D004381 3.6e-52 208.8 157 73.9
TAR383G0918 Trochodendron aralioides HOM05D004106 ORTHO05D004381 3.6e-52 208.8 147 79.6
Lj6g0027633 Lotus japonicus HOM05D004106 ORTHO05D004381 4.7e-52 208.4 145 77.2
MBI15_g18237_MAGBIO Magnolia biondii HOM05D004106 ORTHO05D004381 6.2e-52 208.0 162 72.2
HPP92_004701 Vanilla planifolia HOM05D004106 ORTHO05D004381 8.1e-52 207.6 179 65.4
CAN.G551.46 Capsicum annuum HOM05D004106 ORTHO05D004381 3.1e-51 205.7 140 79.3
Os02g0180200 Oryza sativa ssp. japonica HOM05D004106 ORTHO05D004381 3.1e-51 205.7 150 73.3
Peaxi162Scf00062g00225 Petunia axillaris HOM05D004106 ORTHO05D004381 3.1e-51 205.7 138 80.4
Psat1g022480 Pisum sativum HOM05D004106 ORTHO05D004381 4.0e-51 205.3 148 76.4
SGA_v2.0_scaffold4G02174 Striga asiatica HOM05D004106 ORTHO05D004381 4.0e-51 205.3 150 76.0
PGR102G1248 Punica granatum HOM05D004106 ORTHO05D004381 6.8e-51 204.5 146 75.3
Sopen12g004850 Solanum pennellii HOM05D004106 ORTHO05D004381 6.8e-51 204.5 140 79.3
PGSC0003DMG400007906 Solanum tuberosum HOM05D004106 ORTHO05D004381 6.8e-51 204.5 140 79.3
Lj4g0010746 Lotus japonicus HOM05D004106 ORTHO05D004381 8.9e-51 204.1 163 71.8
Prupe.7G264300 Prunus persica HOM05D004106 ORTHO05D004381 8.9e-51 204.1 135 80.0
Migut.K00317 Erythranthe guttata HOM05D004106 ORTHO05D004381 1.2e-50 203.8 139 77.0
Hund25620 Selenicereus undatus HOM05D004106 ORTHO05D004381 1.2e-50 203.8 173 68.8
MSTRG.1632 Avicennia marina HOM05D004106 ORTHO05D004381 1.5e-50 203.4 141 78.7
Solyc12g009980.2 Solanum lycopersicum HOM05D004106 ORTHO05D004381 1.5e-50 203.4 184 66.8
Lalb_Chr07g0179881 Lupinus albus HOM05D004106 ORTHO05D004381 2.0e-50 203.0 181 63.5
CAN.G353.7 Capsicum annuum HOM05D004106 ORTHO05D004381 2.6e-50 202.6 152 73.7
ClCG06G012460 Citrullus lanatus HOM05D004106 ORTHO05D004381 3.4e-50 202.2 167 69.5
MBI14_g09102_MAGBIO Magnolia biondii HOM05D004106 ORTHO05D004381 3.4e-50 202.2 166 69.3
Zm00001eb206700 Zea mays HOM05D004106 ORTHO05D004381 4.4e-50 201.8 150 72.7
CDE05G2988 Ceratophyllum demersum HOM05D004106 ORTHO05D004381 5.8e-50 201.4 163 69.9
Lsat_1_v5_gn_7_50001 Lactuca sativa HOM05D004106 ORTHO05D004381 5.8e-50 201.4 138 79.0
unitig_749.g13818 Utricularia gibba HOM05D004106 ORTHO05D004381 7.6e-50 201.1 141 79.4
TPR.G3593 Trifolium pratense HOM05D004106 ORTHO05D004381 9.9e-50 200.7 205 61.0
Manes.03G008200 Manihot esculenta HOM05D004106 ORTHO05D004381 1.7e-49 199.9 140 76.4
Sed0000106 Sechium edule HOM05D004106 ORTHO05D004381 1.7e-49 199.9 148 75.0
TWI34G1622 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 1.7e-49 199.9 146 75.3
TWI63G0696 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 1.7e-49 199.9 153 73.9
Aqoxy7G02464 Aquilegia oxysepala HOM05D004106 ORTHO05D004381 2.2e-49 199.5 139 78.4
vmacro06074 Vaccinium macrocarpon HOM05D004106 ORTHO05D004381 2.9e-49 199.1 152 69.7
CDE02G1701 Ceratophyllum demersum HOM05D004106 ORTHO05D004381 6.4e-49 198.0 164 68.9
TWI32G0932 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 8.4e-49 197.6 186 66.1
BcaC01g01145 Brassica carinata HOM05D004106 ORTHO05D004381 1.4e-48 196.8 165 69.7
Medtr4g130730 Medicago truncatula HOM05D004106 ORTHO05D004381 3.2e-48 195.7 164 67.7
TPR.G24849 Trifolium pratense HOM05D004106 ORTHO05D004381 4.1e-48 195.3 140 75.7
MD15G1041000 Malus domestica HOM05D004106 ORTHO05D004381 7.1e-48 194.5 149 71.8
Actinidia23107 Actinidia chinensis HOM05D004106 ORTHO05D004381 1.2e-47 193.7 142 75.4
Aqoxy7G02301 Aquilegia oxysepala HOM05D004106 ORTHO05D004381 2.1e-47 193.0 115 87.0
Cfa013048 Carpinus fangiana HOM05D004106 ORTHO05D004381 2.7e-47 192.6 113 88.5
AUR62024802 Chenopodium quinoa HOM05D004106 ORTHO05D004381 4.6e-47 191.8 115 84.3
AUR62032418 Chenopodium quinoa HOM05D004106 ORTHO05D004381 4.6e-47 191.8 115 84.3
Ah.10g025490 Amaranthus hybridus HOM05D004106 ORTHO05D004381 1.3e-46 190.3 153 71.9
Haze_21409 Corylus avellana HOM05D004106 ORTHO05D004381 3.9e-46 188.7 112 87.5
Psat4g009640 Pisum sativum HOM05D004106 ORTHO05D004381 3.9e-46 188.7 145 70.3
Sabra18G0090100 Salix brachista HOM05D004106 ORTHO05D004381 8.7e-46 187.6 173 61.8
SalBow1G1642 Salvia bowleyana HOM05D004106 ORTHO05D004381 1.1e-45 187.2 145 71.0
Lalb_Chr12g0198731 Lupinus albus HOM05D004106 ORTHO05D004381 5.6e-45 184.9 113 83.2
Mapoly0031s0030 Marchantia polymorpha HOM05D004106 ORTHO05D004381 4.7e-44 181.8 136 66.2
vmacro05152 Vaccinium macrocarpon HOM05D004106 ORTHO05D004381 1.8e-43 179.9 176 60.2
Haze_19171 Corylus avellana HOM05D004106 ORTHO05D004381 2.0e-42 176.4 111 82.9
Pp3c2_35530 Physcomitrium patens HOM05D004106 ORTHO05D004381 1.7e-41 173.3 139 66.9
SMO364G0386 Selaginella moellendorffii HOM05D004106 ORTHO05D004381 1.1e-40 170.6 109 78.0
FAN20G0773 Fragaria x ananassa HOM05D004106 ORTHO05D004381 1.9e-40 169.9 184 57.1
MELO3C010214.2 Cucumis melo HOM05D004106 ORTHO05D004381 5.4e-40 168.3 125 72.8
Pp3c1_1160 Physcomitrium patens HOM05D004106 ORTHO05D004381 9.3e-40 167.5 181 55.8
Pp3c11_2360 Physcomitrium patens HOM05D004106 ORTHO05D004381 2.1e-39 166.4 143 62.2
CANSAT54G0776 Cannabis sativa HOM05D004106 ORTHO05D004381 1.1e-37 160.6 145 63.4
Nitab4.5_0002891g0090 Nicotiana tabacum HOM05D004106 ORTHO05D004381 1.9e-37 159.8 144 63.9
Nitab4.5_0008875g0050 Nicotiana tabacum HOM05D004106 ORTHO05D004381 1.9e-37 159.8 144 63.9
Thecc.09G028700 Theobroma cacao HOM05D004106 ORTHO05D004381 2.5e-37 159.5 133 67.7
CBR_g728 Chara braunii HOM05D004106 ORTHO05D004381 2.1e-36 156.4 113 70.8
CBR_g54183 Chara braunii HOM05D004106 ORTHO05D004381 2.8e-36 156.0 111 70.3
AagrBONN_evm.TU.Sc2ySwM_228.5744 Anthoceros agrestis HOM05D004106 ORTHO05D004381 3.6e-36 155.6 122 71.3
Zm00001eb234060 Zea mays HOM05D004106 ORTHO05D004381 6.9e-35 151.4 150 59.3
Hma1.2p1_2680F.1_g326820 Hydrangea macrophylla HOM05D004106 ORTHO05D004381 4.5e-34 148.7 153 59.5
Nn8g39925 Nelumbo nucifera HOM05D004106 ORTHO05D004381 9.9e-34 147.5 152 59.9
Sc09g0010670 Simmondsia chinensis HOM05D004106 ORTHO05D004381 3.8e-33 145.6 125 68.8
Rhsim07G0165600 Rhododendron simsii HOM05D004106 ORTHO05D004381 3.2e-32 142.5 292 36.6
PRCOL_00004350 Prasinoderma coloniale HOM05D004106 ORTHO05D004381 1.5e-29 133.7 107 61.7
Actinidia38669 Actinidia chinensis HOM05D004106 ORTHO05D004381 2.4e-27 126.3 137 56.2
BraA02t07117Z Brassica rapa HOM05D004106 ORTHO05D004381 6.4e-25 118.2 101 71.3
A02p20860 Brassica napus HOM05D004106 ORTHO05D004381 2.4e-24 116.3 96 72.9
Cre10.g458550 Chlamydomonas reinhardtii HOM05D004106 ORTHO05D004381 4.2e-24 115.5 157 45.2
BcaC03g15698 Brassica carinata HOM05D004106 ORTHO05D004381 7.1e-24 114.8 97 74.2
BolC2t09418H Brassica oleracea HOM05D004106 ORTHO05D004381 7.1e-24 114.8 97 74.2
C02p32810 Brassica napus HOM05D004106 ORTHO05D004381 9.3e-24 114.4 97 74.2
BcaB05g25007 Brassica carinata HOM05D004106 ORTHO05D004381 2.1e-23 113.2 91 71.4
QL02p018811 Quercus lobata HOM05D004106 ORTHO05D004381 1.3e-20 104.0 85 68.2
Gohir.D07G031300 Gossypium hirsutum HOM05D004106 ORTHO05D004381 6.2e-20 101.7 120 55.0
BcaB01g01386 Brassica carinata HOM05D004106 ORTHO05D005755 7.1e-16 88.2 49 93.9
Peaxi162Scf00387g00211 Petunia axillaris HOM05D004106 ORTHO05D004381 9.3e-16 87.8 87 57.5
CARHR238490 Cardamine hirsuta HOM05D004106 ORTHO05D004381 1.0e-14 84.3 47 89.4
SEGI_18679 Sequoiadendron giganteum HOM05D004106 ORTHO05D004381 3.7e-12 75.9 44 86.4
Lsat_1_v5_gn_7_47460 Lactuca sativa HOM05D004106 ORTHO05D002137 7.2e-08 61.6 38 81.6


User provided reference genes

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