Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G23940 Arabidopsis thaliana HOM05D005031 ORTHO05D006098 4.9e-91 337.8 174 100.0
AL4G13970 Arabidopsis lyrata HOM05D005031 ORTHO05D006098 2.1e-89 332.4 174 97.1
Carub.0004s0310 Capsella rubella HOM05D005031 ORTHO05D006098 3.4e-84 315.1 174 92.0
CARHR184610 Cardamine hirsuta HOM05D005031 ORTHO05D006098 1.4e-82 309.7 174 92.5
Sp7g28380 Schrenkiella parvula HOM05D005031 ORTHO05D006098 3.2e-82 308.5 174 88.5
Thhalv10026393m.g Eutrema salsugineum HOM05D005031 ORTHO05D006098 2.7e-81 305.4 174 86.8
C01p08550 Brassica napus HOM05D005031 ORTHO05D006098 5.1e-80 301.2 174 86.8
BcaNung00560 Brassica carinata HOM05D005031 ORTHO05D006098 6.7e-80 300.8 174 86.2
BcaNung00561 Brassica carinata HOM05D005031 ORTHO05D006098 6.7e-80 300.8 174 86.2
C07p57970 Brassica napus HOM05D005031 ORTHO05D006098 6.7e-80 300.8 174 86.2
BolC7t46255H Brassica oleracea HOM05D005031 ORTHO05D006098 6.7e-80 300.8 174 86.2
BcaC09g51840 Brassica carinata HOM05D005031 ORTHO05D006098 8.7e-80 300.4 174 87.4
A03p59910 Brassica napus HOM05D005031 ORTHO05D006098 1.5e-79 299.7 174 86.2
BraA03t15048Z Brassica rapa HOM05D005031 ORTHO05D006098 3.3e-79 298.5 174 85.6
Aa31LG2G20010 Aethionema arabicum HOM05D005031 ORTHO05D006098 7.4e-79 297.4 174 83.9
A01p07680 Brassica napus HOM05D005031 ORTHO05D006098 2.1e-78 295.8 174 85.1
BraA01t00711Z Brassica rapa HOM05D005031 ORTHO05D006098 2.8e-78 295.4 173 85.0
THA.LOC104803530 Tarenaya hassleriana HOM05D005031 ORTHO05D006098 2.0e-76 289.3 174 85.1
THA.LOC104819960 Tarenaya hassleriana HOM05D005031 ORTHO05D006098 2.6e-76 288.9 174 82.8
BolC1t00837H Brassica oleracea HOM05D005031 ORTHO05D006098 2.9e-75 285.4 167 85.0
BolC1t00831H Brassica oleracea HOM05D005031 ORTHO05D006098 1.1e-74 283.5 167 84.4
AL7G21640 Arabidopsis lyrata HOM05D005031 ORTHO05D006098 2.5e-74 282.3 174 79.9
Ca_21160_v3 Cicer arietinum L. HOM05D005031 ORTHO05D006098 2.1e-73 279.3 174 78.7
Medtr4g130180 Medicago truncatula HOM05D005031 ORTHO05D006098 1.0e-72 276.9 174 78.2
MD00G1059200 Malus domestica HOM05D005031 ORTHO05D006098 2.3e-72 275.8 174 77.6
Gohir.D08G098400 Gossypium hirsutum HOM05D005031 ORTHO05D006098 7.4e-71 270.8 174 77.6
Prupe.1G100400 Prunus persica HOM05D005031 ORTHO05D006098 7.4e-71 270.8 174 75.9
Ciclev10012924m.g Citrus clementina HOM05D005031 ORTHO05D006098 1.3e-70 270.0 174 75.9
RcHm_v2.0_Chr4g0405231 Rosa chinensis HOM05D005031 ORTHO05D006098 1.3e-70 270.0 174 75.3
TPR.G1244 Trifolium pratense HOM05D005031 ORTHO05D006098 2.2e-70 269.2 174 76.4
FvH4_3g25860 Fragaria vesca HOM05D005031 ORTHO05D006098 2.8e-70 268.9 174 75.3
FAN11G2096 Fragaria x ananassa HOM05D005031 ORTHO05D006098 2.8e-70 268.9 174 75.3
Gorai.004G106100 Gossypium raimondii HOM05D005031 ORTHO05D006098 2.8e-70 268.9 174 77.0
Thecc.09G157500 Theobroma cacao HOM05D005031 ORTHO05D006098 3.7e-70 268.5 174 77.6
Gohir.A08G087500 Gossypium hirsutum HOM05D005031 ORTHO05D006098 4.8e-70 268.1 174 76.4
Nn8g40193 Nelumbo nucifera HOM05D005031 ORTHO05D006098 4.8e-70 268.1 174 74.7
VMungo1215G0734 Vigna mungo HOM05D005031 ORTHO05D006098 4.8e-70 268.1 174 74.1
AT4G30500 Arabidopsis thaliana HOM05D005031 ORTHO05D006098 6.3e-70 267.7 174 77.0
Duzib187G1655 Durio zibethinus HOM05D005031 ORTHO05D006098 8.2e-70 267.3 174 76.4
Duzib168G1565 Durio zibethinus HOM05D005031 ORTHO05D006098 1.8e-69 266.2 174 75.9
CANSAT11G2524 Cannabis sativa HOM05D005031 ORTHO05D006098 2.4e-69 265.8 174 75.9
Duzib187G0728 Durio zibethinus HOM05D005031 ORTHO05D006098 2.4e-69 265.8 174 75.9
Potri.018G101100 Populus trichocarpa HOM05D005031 ORTHO05D006098 2.4e-69 265.8 174 74.1
FAN21G1649 Fragaria x ananassa HOM05D005031 ORTHO05D006098 3.1e-69 265.4 174 74.7
MD00G1091200 Malus domestica HOM05D005031 ORTHO05D006098 3.1e-69 265.4 174 75.9
Phvul.010G125500 Phaseolus vulgaris HOM05D005031 ORTHO05D006098 3.1e-69 265.4 174 73.0
Lj6g0018969 Lotus japonicus HOM05D005031 ORTHO05D006098 4.1e-69 265.0 174 74.7
RcHm_v2.0_Chr5g0047191 Rosa chinensis HOM05D005031 ORTHO05D006098 4.1e-69 265.0 174 74.1
Phvul.003G152700 Phaseolus vulgaris HOM05D005031 ORTHO05D006098 5.3e-69 264.6 174 73.0
Glyma.02G207700 Glycine max HOM05D005031 ORTHO05D006098 6.9e-69 264.2 174 73.0
ATR0580G158 Amborella trichopoda HOM05D005031 ORTHO05D006098 9.0e-69 263.8 174 75.3
arahy.Tifrunner.gnm1.ann1.QFVN2V Arachis hypogaea HOM05D005031 ORTHO05D006098 9.0e-69 263.8 174 74.7
EL10Ac7g17961 Beta vulgaris HOM05D005031 ORTHO05D006098 1.2e-68 263.5 174 75.3
Glyma.17G070000 Glycine max HOM05D005031 ORTHO05D006098 2.0e-68 262.7 174 72.4
CsaV3_2G007780 Cucumis sativus L. HOM05D005031 ORTHO05D006098 4.5e-68 261.5 174 74.1
Lj4g0007960 Lotus japonicus HOM05D005031 ORTHO05D006098 4.5e-68 261.5 175 73.1
BolC1t00834H Brassica oleracea HOM05D005031 ORTHO05D006098 1.0e-67 260.4 151 84.1
FAN25G2017 Fragaria x ananassa HOM05D005031 ORTHO05D006098 1.0e-67 260.4 174 73.6
Hund18050 Selenicereus undatus HOM05D005031 ORTHO05D006098 1.3e-67 260.0 174 74.7
Oeu045637.1 Olea europaea HOM05D005031 ORTHO05D006098 2.2e-67 259.2 174 73.0
COL.COLO4_10074 Corchorus olitorius HOM05D005031 ORTHO05D006098 3.8e-67 258.5 174 73.0
Hma1.2p1_2290F.1_g319050 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 1.1e-66 256.9 174 70.7
Oeu031856.2 Olea europaea HOM05D005031 ORTHO05D006098 4.2e-66 255.0 174 70.7
Sabra18G0087000 Salix brachista HOM05D005031 ORTHO05D006098 4.2e-66 255.0 194 67.0
GSVIVG01033204001 Vitis vinifera HOM05D005031 ORTHO05D006098 4.2e-66 255.0 174 72.4
Sed0023985 Sechium edule HOM05D005031 ORTHO05D006098 5.5e-66 254.6 174 73.0
MELO3C004109.2 Cucumis melo HOM05D005031 ORTHO05D006098 9.3e-66 253.8 174 72.4
PGR031G2537 Punica granatum HOM05D005031 ORTHO05D006098 9.3e-66 253.8 174 71.3
Manes.06G033000 Manihot esculenta HOM05D005031 ORTHO05D006098 1.2e-65 253.4 174 73.6
TWI73G0469 Tripterygium wilfordii HOM05D005031 ORTHO05D006098 4.6e-65 251.5 174 71.3
CiPaw.06G050600 Carya illinoinensis HOM05D005031 ORTHO05D006098 6.1e-65 251.1 174 71.3
Eucgr.H00166 Eucalyptus grandis HOM05D005031 ORTHO05D006098 7.9e-65 250.8 174 69.0
CAN.G1190.6 Capsicum annuum HOM05D005031 ORTHO05D006098 1.8e-64 249.6 174 71.3
ClCG11G012690 Citrullus lanatus HOM05D005031 ORTHO05D006098 2.3e-64 249.2 174 71.3
SalBow1G8617 Salvia bowleyana HOM05D005031 ORTHO05D006098 6.7e-64 247.7 174 71.3
PSO017G4787 Papaver somniferum HOM05D005031 ORTHO05D006098 8.7e-64 247.3 174 70.7
Peaxi162Scf00038g00324 Petunia axillaris HOM05D005031 ORTHO05D006098 1.5e-63 246.5 174 71.8
PSO478G0084 Papaver somniferum HOM05D005031 ORTHO05D006098 1.9e-63 246.1 174 70.1
arahy.Tifrunner.gnm1.ann1.0TL0BP Arachis hypogaea HOM05D005031 ORTHO05D006098 2.5e-63 245.7 198 64.6
Lalb_Chr07g0180011 Lupinus albus HOM05D005031 ORTHO05D006098 2.5e-63 245.7 175 69.7
Hma1.2p1_1493F.1_g286836 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 1.7e-62 243.0 174 67.8
TAR636G0261 Trochodendron aralioides HOM05D005031 ORTHO05D006098 1.7e-62 243.0 171 70.2
PSO675G4517 Papaver somniferum HOM05D005031 ORTHO05D006098 6.3e-62 241.1 174 69.0
HPP92_025776 Vanilla planifolia HOM05D005031 ORTHO05D006098 6.3e-62 241.1 174 67.8
CDE05G2574 Ceratophyllum demersum HOM05D005031 ORTHO05D006098 1.8e-61 239.6 174 67.2
Migut.K00291 Erythranthe guttata HOM05D005031 ORTHO05D006098 9.1e-61 237.3 174 69.0
Atru.chr12.1707 Acer truncatum HOM05D005031 ORTHO05D006098 2.6e-60 235.7 174 67.8
Zm00001eb186920 Zea mays HOM05D005031 ORTHO05D006098 2.6e-60 235.7 175 69.7
Nitab4.5_0001036g0100 Nicotiana tabacum HOM05D005031 ORTHO05D006098 4.5e-60 235.0 174 69.5
Aqoxy5G00990 Aquilegia oxysepala HOM05D005031 ORTHO05D006098 7.7e-60 234.2 171 67.3
Nitab4.5_0002545g0040 Nicotiana tabacum HOM05D005031 ORTHO05D006098 3.8e-59 231.9 174 68.4
Solyc07g006150.3 Solanum lycopersicum HOM05D005031 ORTHO05D006098 3.8e-59 231.9 174 68.4
Sopen07g002260 Solanum pennellii HOM05D005031 ORTHO05D006098 3.8e-59 231.9 174 68.4
PGSC0003DMG400011218 Solanum tuberosum HOM05D005031 ORTHO05D006098 3.8e-59 231.9 174 67.8
TWI23G1034 Tripterygium wilfordii HOM05D005031 ORTHO05D006098 5.0e-59 231.5 158 71.5
SGA_v2.0_scaffold12G06032 Striga asiatica HOM05D005031 ORTHO05D006098 2.5e-58 229.2 174 66.7
Hma1.2p1_2438F.1_g322190 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 1.6e-57 226.5 156 68.6
Atru.chr12.1715 Acer truncatum HOM05D005031 ORTHO05D006098 2.7e-57 225.7 143 74.1
HanXRQChr10g0307831 Helianthus annuus HOM05D005031 ORTHO05D006098 3.6e-57 225.3 174 64.9
MBI14_g16418_MAGBIO Magnolia biondii HOM05D005031 ORTHO05D006098 3.0e-56 222.2 145 73.8
QL01p011713 Quercus lobata HOM05D005031 ORTHO05D006098 3.0e-56 222.2 173 63.6
ECA234G3840 Erigeron canadensis HOM05D005031 ORTHO05D006098 5.1e-56 221.5 174 63.8
MSTRG.10716 Avicennia marina HOM05D005031 ORTHO05D006098 8.2e-54 214.2 174 61.5
vmacro01000 Vaccinium macrocarpon HOM05D005031 ORTHO05D006098 8.2e-54 214.2 174 62.6
Cc06_g14310 Coffea canephora HOM05D005031 ORTHO05D006098 2.6e-52 209.1 174 63.2
Sed0023066 Sechium edule HOM05D005031 ORTHO05D006098 2.6e-52 209.1 146 71.2
Psat0s2826g0160 Pisum sativum HOM05D005031 ORTHO05D006098 5.5e-50 201.4 122 77.0
Actinidia38656 Actinidia chinensis HOM05D005031 ORTHO05D006098 7.2e-50 201.1 174 58.6
Actinidia33308 Actinidia chinensis HOM05D005031 ORTHO05D006098 2.1e-49 199.5 174 59.8
CSS0024126 Camellia sinensis var. sinensis HOM05D005031 ORTHO05D006098 6.1e-49 198.0 171 59.6
CSS0012616 Camellia sinensis var. sinensis HOM05D005031 ORTHO05D006098 8.0e-49 197.6 171 59.6
Lsat_1_v5_gn_5_88201 Lactuca sativa HOM05D005031 ORTHO05D006098 1.0e-48 197.2 176 61.9
Dinv41325 Davidia involucrata HOM05D005031 ORTHO05D006098 2.3e-48 196.1 174 57.5
Rhsim03G0261100 Rhododendron simsii HOM05D005031 ORTHO05D006098 5.2e-48 194.9 196 54.1
Hma1.2p1_2725F.1_g327560 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 6.7e-48 194.5 122 73.8
Sc05g0001840 Simmondsia chinensis HOM05D005031 ORTHO05D006098 1.5e-47 193.4 122 73.0
Os02g0666800 Oryza sativa ssp. japonica HOM05D005031 ORTHO05D006098 7.4e-47 191.0 175 56.6
AagrBONN_evm.TU.Sc2ySwM_368.3216 Anthoceros agrestis HOM05D005031 ORTHO05D006098 5.3e-45 184.9 171 57.3
AUR62001168 Chenopodium quinoa HOM05D005031 ORTHO05D006098 2.0e-44 183.0 182 56.0
Rhsim03G0260600 Rhododendron simsii HOM05D005031 ORTHO05D006098 2.9e-43 179.1 239 44.4
SMO164G0234 Selaginella moellendorffii HOM05D005031 ORTHO05D006098 2.3e-40 169.5 174 52.9
Mapoly0003s0226 Marchantia polymorpha HOM05D005031 ORTHO05D006098 4.0e-40 168.7 174 51.7
Pp3c11_17250 Physcomitrium patens HOM05D005031 ORTHO05D006098 2.8e-38 162.5 173 51.4
Ah.08g218880 Amaranthus hybridus HOM05D005031 ORTHO05D006098 4.5e-36 155.2 94 76.6
AUR62022155 Chenopodium quinoa HOM05D005031 ORTHO05D006098 7.7e-36 154.5 94 75.5
Haze_21256 Corylus avellana HOM05D005031 ORTHO05D006098 1.0e-35 154.1 95 72.6
Cpa.g.sc743.3 Carica papaya HOM05D005031 ORTHO05D006098 1.9e-34 149.8 93 75.3
CBR_g3690 Chara braunii HOM05D005031 ORTHO05D006098 3.2e-34 149.1 173 43.4
BcaB08g34788 Brassica carinata HOM05D005031 ORTHO05D006098 1.2e-33 147.1 127 64.6
BcaNung01743 Brassica carinata HOM05D005031 ORTHO05D006098 4.7e-33 145.2 119 63.0
CARHR238390 Cardamine hirsuta HOM05D005031 ORTHO05D006098 5.9e-28 128.3 96 64.6
BcaB04g19089 Brassica carinata HOM05D005031 ORTHO05D006098 1.3e-27 127.1 121 58.7
Cre02.g096850 Chlamydomonas reinhardtii HOM05D005031 ORTHO05D006098 4.9e-22 108.6 168 36.9
Lj7A465G52 Lonicera japonica HOM05D005031 ORTHO05D006098 2.0e-20 103.2 80 57.5
unitig_62.g23488 Utricularia gibba HOM05D005031 ORTHO05D006098 1.9e-18 96.7 85 57.6
MELO3C020438.2 Cucumis melo HOM05D005031 ORTHO05D006098 1.2e-17 94.0 55 72.7
MELO3C010414.2 Cucumis melo HOM05D005031 ORTHO05D006098 6.8e-16 88.2 53 73.6
MELO3C032992.2 Cucumis melo HOM05D005031 ORTHO05D006098 8.3e-14 81.3 48 72.9
PRCOL_00004780 Prasinoderma coloniale HOM05D005031 ORTHO05D006098 8.3e-14 81.3 176 28.4
CARHR184590 Cardamine hirsuta HOM05D005031 ORTHO05D006098 3.0e-11 72.8 50 76.0
Rhsim03G0261000 Rhododendron simsii HOM05D005031 ORTHO05D006098 8.6e-11 71.2 94 43.6
MELO3C033057.2 Cucumis melo HOM05D005031 ORTHO05D006098 1.1e-10 70.9 38 78.9
MCO15G043 Micromonas commoda HOM05D005031 ORTHO05D006098 2.5e-10 69.7 174 29.9
Sp4g02835 Schrenkiella parvula HOM05D005031 ORTHO05D006098 2.3e-08 63.2 172 31.4


User provided reference genes

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