Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G23370 Arabidopsis thaliana HOM05D004652 ORTHO05D005634 2.7e-194 681.8 341 100.0
AL4G13280 Arabidopsis lyrata HOM05D004652 ORTHO05D005634 8.0e-178 627.1 342 93.3
Carub.0004s0257 Capsella rubella HOM05D004652 ORTHO05D005634 2.0e-173 612.5 342 90.1
CARHR293000 Cardamine hirsuta HOM05D004652 ORTHO05D005634 1.6e-170 602.8 341 89.1
Sp4g02380 Schrenkiella parvula HOM05D004652 ORTHO05D005634 3.7e-167 591.7 343 87.8
BolC8t51563H Brassica oleracea HOM05D004652 ORTHO05D005634 9.1e-166 587.0 343 86.6
A09p56940 Brassica napus HOM05D004652 ORTHO05D005634 5.9e-165 584.3 343 86.3
BcaC07g40988 Brassica carinata HOM05D004652 ORTHO05D005634 2.9e-164 582.0 343 86.0
C08p39900 Brassica napus HOM05D004652 ORTHO05D005634 2.9e-164 582.0 343 86.0
BraA09t41086Z Brassica rapa HOM05D004652 ORTHO05D005634 1.1e-163 580.1 343 86.0
Aa31LG7G13600 Aethionema arabicum HOM05D004652 ORTHO05D005634 1.8e-145 519.6 383 72.8
THA.LOC104807591 Tarenaya hassleriana HOM05D004652 ORTHO05D005634 1.9e-142 509.6 342 75.1
Thhalv10000243m.g Eutrema salsugineum HOM05D004652 ORTHO05D005634 2.7e-141 505.8 350 77.1
Cpa.g.sc55.119 Carica papaya HOM05D004652 ORTHO05D005634 2.1e-130 469.5 338 67.8
Duzib147G0331 Durio zibethinus HOM05D004652 ORTHO05D005634 2.1e-125 453.0 335 66.3
CiPaw.01G015500 Carya illinoinensis HOM05D004652 ORTHO05D005634 3.0e-124 449.1 329 66.3
Thecc.01G060000 Theobroma cacao HOM05D004652 ORTHO05D005634 3.0e-124 449.1 303 71.0
Gorai.007G215700 Gossypium raimondii HOM05D004652 ORTHO05D005634 5.1e-124 448.4 340 65.3
CiPaw.01G015800 Carya illinoinensis HOM05D004652 ORTHO05D005634 6.6e-124 448.0 329 66.3
VMungo1215G2858 Vigna mungo HOM05D004652 ORTHO05D005634 1.1e-123 447.2 329 65.7
Manes.13G121100 Manihot esculenta HOM05D004652 ORTHO05D005634 1.5e-123 446.8 343 65.0
QL06p040720 Quercus lobata HOM05D004652 ORTHO05D005634 5.6e-123 444.9 343 63.6
GSVIVG01022087001 Vitis vinifera HOM05D004652 ORTHO05D005634 1.2e-122 443.7 343 63.3
arahy.Tifrunner.gnm1.ann1.8Y90C0 Arachis hypogaea HOM05D004652 ORTHO05D005634 2.1e-122 443.0 318 66.7
arahy.Tifrunner.gnm1.ann1.EFTP1R Arachis hypogaea HOM05D004652 ORTHO05D005634 4.7e-122 441.8 318 66.4
Lj2g0023089 Lotus japonicus HOM05D004652 ORTHO05D005634 8.1e-122 441.0 342 62.9
Nn5g30355 Nelumbo nucifera HOM05D004652 ORTHO05D005634 8.1e-122 441.0 313 67.1
Lalb_Chr05g0213341 Lupinus albus HOM05D004652 ORTHO05D005634 1.1e-121 440.7 341 62.2
Dinv30009 Davidia involucrata HOM05D004652 ORTHO05D005634 1.8e-121 439.9 326 66.3
Phvul.002G017100 Phaseolus vulgaris HOM05D004652 ORTHO05D005634 2.4e-121 439.5 332 63.6
CANSAT25G2702 Cannabis sativa HOM05D004652 ORTHO05D005634 8.9e-121 437.6 343 61.8
Gohir.A11G195100 Gossypium hirsutum HOM05D004652 ORTHO05D005634 1.2e-120 437.2 309 67.3
Glyma.11G054000 Glycine max HOM05D004652 ORTHO05D005634 2.0e-120 436.4 328 63.7
Ciclev10025986m.g Citrus clementina HOM05D004652 ORTHO05D005634 3.4e-120 435.6 313 67.1
Actinidia36476 Actinidia chinensis HOM05D004652 ORTHO05D005634 4.4e-120 435.3 340 62.1
TWI09G0879 Tripterygium wilfordii HOM05D004652 ORTHO05D005634 4.4e-120 435.3 316 66.5
RcHm_v2.0_Chr2g0106191 Rosa chinensis HOM05D004652 ORTHO05D005634 5.8e-120 434.9 343 63.8
CSS0025726 Camellia sinensis var. sinensis HOM05D004652 ORTHO05D005634 7.6e-120 434.5 326 63.2
Haze_15373 Corylus avellana HOM05D004652 ORTHO05D005634 9.9e-120 434.1 356 59.3
Glyma.01G188100 Glycine max HOM05D004652 ORTHO05D005634 1.7e-119 433.3 338 62.1
PGR102G1991 Punica granatum HOM05D004652 ORTHO05D005634 2.9e-119 432.6 310 65.5
ECA232G0198 Erigeron canadensis HOM05D004652 ORTHO05D005634 3.8e-119 432.2 324 65.1
Peaxi162Scf00549g00023 Petunia axillaris HOM05D004652 ORTHO05D005634 6.4e-119 431.4 314 64.3
FvH4_1g16330 Fragaria vesca HOM05D004652 ORTHO05D005634 1.9e-118 429.9 343 63.0
Potri.007G045900 Populus trichocarpa HOM05D004652 ORTHO05D005634 1.9e-118 429.9 340 61.5
MELO3C020851.2 Cucumis melo HOM05D004652 ORTHO05D005634 2.4e-118 429.5 313 64.2
Medtr7g104350 Medicago truncatula HOM05D004652 ORTHO05D005634 2.4e-118 429.5 313 64.9
CsaV3_2G016420 Cucumis sativus L. HOM05D004652 ORTHO05D005634 3.2e-118 429.1 313 64.5
PSO675G7477 Papaver somniferum HOM05D004652 ORTHO05D005634 3.2e-118 429.1 324 63.0
FAN23G0595 Fragaria x ananassa HOM05D004652 ORTHO05D005634 5.4e-118 428.3 344 62.5
FAN19G0057 Fragaria x ananassa HOM05D004652 ORTHO05D005634 7.1e-118 427.9 343 62.7
Psat3g034240 Pisum sativum HOM05D004652 ORTHO05D005634 7.1e-118 427.9 330 62.4
PGSC0003DMG400004028 Solanum tuberosum HOM05D004652 ORTHO05D005634 7.1e-118 427.9 342 60.2
Lj7A73G20 Lonicera japonica HOM05D004652 ORTHO05D005634 1.2e-117 427.2 306 66.0
Cc07_g06170 Coffea canephora HOM05D004652 ORTHO05D005634 1.6e-117 426.8 314 64.3
MD02G1175800 Malus domestica HOM05D004652 ORTHO05D005634 1.6e-117 426.8 329 64.1
Sed0013827 Sechium edule HOM05D004652 ORTHO05D005634 1.6e-117 426.8 315 65.7
TPR.G19549 Trifolium pratense HOM05D004652 ORTHO05D005634 1.6e-117 426.8 311 64.6
GSVIVG01031712001 Vitis vinifera HOM05D004652 ORTHO05D005634 1.6e-117 426.8 341 62.2
Hma1.2p1_0670F.1_g200440 Hydrangea macrophylla HOM05D004652 ORTHO05D005634 4.6e-117 425.2 329 62.6
Nitab4.5_0001221g0030 Nicotiana tabacum HOM05D004652 ORTHO05D005634 5.1e-116 421.8 314 63.1
Actinidia12037 Actinidia chinensis HOM05D004652 ORTHO05D005634 8.7e-116 421.0 356 59.3
Gorai.013G045700 Gossypium raimondii HOM05D004652 ORTHO05D005634 8.7e-116 421.0 318 63.5
Sopen02g037740 Solanum pennellii HOM05D004652 ORTHO05D005634 8.7e-116 421.0 312 62.5
Atru.chr5.2643 Acer truncatum HOM05D004652 ORTHO05D005634 1.1e-115 420.6 321 62.6
Atru.chr5.2649 Acer truncatum HOM05D004652 ORTHO05D005634 1.1e-115 420.6 321 62.6
MSTRG.23735 Avicennia marina HOM05D004652 ORTHO05D005634 1.9e-115 419.9 311 64.0
Gohir.A13G042200 Gossypium hirsutum HOM05D004652 ORTHO05D005634 1.9e-115 419.9 318 63.5
Solyc02g093170.4 Solanum lycopersicum HOM05D004652 ORTHO05D005634 1.9e-115 419.9 313 62.3
AUR62013234 Chenopodium quinoa HOM05D004652 ORTHO05D005634 7.3e-115 417.9 310 65.8
FAN28G0632 Fragaria x ananassa HOM05D004652 ORTHO05D005634 1.3e-114 417.2 348 60.9
Lsat_1_v5_gn_4_165120 Lactuca sativa HOM05D004652 ORTHO05D005634 1.6e-114 416.8 340 61.8
Ciclev10030127m.g Citrus clementina HOM05D004652 ORTHO05D005634 6.2e-114 414.8 314 64.0
DCAR_010876 Daucus carota HOM05D004652 ORTHO05D005634 6.2e-114 414.8 347 59.4
Nitab4.5_0002765g0060 Nicotiana tabacum HOM05D004652 ORTHO05D005634 1.4e-113 413.7 336 59.8
Aqoxy6G01262 Aquilegia oxysepala HOM05D004652 ORTHO05D005634 1.8e-113 413.3 327 61.5
Eucgr.I01131 Eucalyptus grandis HOM05D004652 ORTHO05D005634 3.1e-113 412.5 317 64.4
HanXRQChr15g0490761 Helianthus annuus HOM05D004652 ORTHO05D005634 3.1e-113 412.5 344 61.0
Thecc.02G103600 Theobroma cacao HOM05D004652 ORTHO05D005634 1.5e-112 410.2 318 63.8
Duzib132G1249 Durio zibethinus HOM05D004652 ORTHO05D005634 2.0e-112 409.8 317 62.1
Migut.H00415 Erythranthe guttata HOM05D004652 ORTHO05D005634 2.0e-112 409.8 312 61.9
CSS0033708 Camellia sinensis var. sinensis HOM05D004652 ORTHO05D005634 4.4e-112 408.7 311 62.1
Potri.009G099600 Populus trichocarpa HOM05D004652 ORTHO05D005634 5.8e-112 408.3 318 61.9
Sabra07G0041100 Salix brachista HOM05D004652 ORTHO05D005634 9.9e-112 407.5 366 55.5
Atru.chr3.293 Acer truncatum HOM05D004652 ORTHO05D005634 1.3e-111 407.1 338 61.2
Sabra09G0075900 Salix brachista HOM05D004652 ORTHO05D005634 1.3e-111 407.1 318 61.9
Sc07g0000730 Simmondsia chinensis HOM05D004652 ORTHO05D005634 3.8e-111 405.6 312 61.2
unitig_736.g22389 Utricularia gibba HOM05D004652 ORTHO05D005634 3.8e-111 405.6 341 58.7
Gohir.D11G201200 Gossypium hirsutum HOM05D004652 ORTHO05D005634 6.4e-111 404.8 284 68.0
TWI31G1310 Tripterygium wilfordii HOM05D004652 ORTHO05D005634 1.1e-110 404.1 306 63.1
Hund13540 Selenicereus undatus HOM05D004652 ORTHO05D005634 2.1e-109 399.8 336 57.4
THA.LOC104807263 Tarenaya hassleriana HOM05D004652 ORTHO05D005634 1.5e-107 393.7 317 59.9
Eucgr.H01690 Eucalyptus grandis HOM05D004652 ORTHO05D005634 7.4e-107 391.3 311 58.2
EL10Ac9g22324 Beta vulgaris HOM05D004652 ORTHO05D005634 2.1e-106 389.8 350 55.7
Ah.01g017900 Amaranthus hybridus HOM05D004652 ORTHO05D005634 2.8e-106 389.4 286 64.7
CDE02G2369 Ceratophyllum demersum HOM05D004652 ORTHO05D005634 1.1e-105 387.5 311 61.1
Os03g0109700 Oryza sativa ssp. japonica HOM05D004652 ORTHO05D005634 4.0e-105 385.6 322 56.5
AT4G34090 Arabidopsis thaliana HOM05D004652 ORTHO05D005634 6.9e-105 384.8 318 59.7
Thhalv10025679m.g Eutrema salsugineum HOM05D004652 ORTHO05D005634 6.9e-105 384.8 315 60.0
SGA_v2.0_scaffold143G35809 Striga asiatica HOM05D004652 ORTHO05D005634 9.0e-105 384.4 279 65.2
Aa31LG2G16510 Aethionema arabicum HOM05D002471 ORTHO05D003712 2.6e-104 382.9 316 60.1
AL7G17310 Arabidopsis lyrata HOM05D004652 ORTHO05D005634 5.8e-104 381.7 318 59.7
CARHR242200 Cardamine hirsuta HOM05D004652 ORTHO05D005634 5.8e-104 381.7 318 59.1
PSO541G5706 Papaver somniferum HOM05D004652 ORTHO05D005634 5.8e-104 381.7 324 58.3
Carub.0007s0633 Capsella rubella HOM05D004652 ORTHO05D005634 1.3e-103 380.6 318 58.5
Sp7g31800 Schrenkiella parvula HOM05D004652 ORTHO05D005634 1.3e-103 380.6 315 59.4
AUR62010252 Chenopodium quinoa HOM05D004652 ORTHO05D005634 1.7e-103 380.2 279 66.7
AUR62001905 Chenopodium quinoa HOM05D004652 ORTHO05D005634 4.9e-103 378.6 336 55.1
BcaNung03359 Brassica carinata HOM05D004652 ORTHO05D005634 1.9e-102 376.7 315 58.4
vmacro05311 Vaccinium macrocarpon HOM05D004652 ORTHO05D005634 5.5e-102 375.2 314 57.3
ATR0724G029 Amborella trichopoda HOM05D004652 ORTHO05D005634 2.1e-101 373.2 319 55.8
SGA_v2.0_scaffold34G13618 Striga asiatica HOM05D004652 ORTHO05D005634 1.8e-100 370.2 280 64.6
HPP92_024094 Vanilla planifolia HOM05D004652 ORTHO05D005634 1.3e-98 364.0 308 57.8
Zm00001eb404220 Zea mays HOM05D004652 ORTHO05D005634 4.0e-97 359.0 303 57.1
Prupe.6G231900 Prunus persica HOM05D004652 ORTHO05D005634 1.4e-94 350.5 269 64.3
Hund00119 Selenicereus undatus HOM05D004652 ORTHO05D005634 1.4e-94 350.5 326 56.7
Oeu049898.1 Olea europaea HOM05D004652 ORTHO05D005634 1.6e-93 347.1 295 59.0
AUR62003906 Chenopodium quinoa HOM05D004652 ORTHO05D005634 7.9e-93 344.7 278 57.6
COL.COLO4_24563 Corchorus olitorius HOM05D004652 ORTHO05D005634 1.1e-91 340.9 251 65.3
Rhsim10G0114700 Rhododendron simsii HOM05D004652 ORTHO05D005634 1.9e-91 340.1 288 56.2
Pp3c4_13980 Physcomitrium patens HOM05D004652 ORTHO05D005634 1.8e-89 333.6 337 48.4
BolC7t46455H Brassica oleracea HOM05D004652 ORTHO05D005634 1.5e-88 330.5 318 53.8
BraA03t15329Z Brassica rapa HOM05D004652 ORTHO05D005634 8.5e-87 324.7 308 53.2
Cpa.g.sc200.27 Carica papaya HOM05D004652 ORTHO05D005634 1.4e-86 323.9 333 52.0
Pp3c13_18360 Physcomitrium patens HOM05D004652 ORTHO05D005634 2.5e-86 323.2 316 47.8
SMO367G0761 Selaginella moellendorffii HOM05D004652 ORTHO05D005634 7.2e-86 321.6 303 50.2
ClCG02G012270 Citrullus lanatus HOM05D004652 ORTHO05D005634 1.2e-85 320.9 242 63.6
C07p60150 Brassica napus HOM05D004652 ORTHO05D005634 3.0e-84 316.2 345 49.6
A03p62590 Brassica napus HOM05D004652 ORTHO05D005634 9.7e-83 311.2 345 48.7
Mapoly0032s0004 Marchantia polymorpha HOM05D004652 ORTHO05D005634 9.7e-83 311.2 310 47.7
Ca_08994_v3 Cicer arietinum L. HOM05D004652 ORTHO05D005634 6.3e-82 308.5 311 51.4
COL.COLO4_32629 Corchorus olitorius HOM05D004652 ORTHO05D005634 1.2e-80 304.3 321 50.2
CBR_g34458 Chara braunii HOM05D004652 ORTHO05D005634 1.2e-77 294.3 335 46.6
AagrBONN_evm.TU.Sc2ySwM_362.2895 Anthoceros agrestis HOM05D004652 ORTHO05D005634 6.1e-77 292.0 321 45.8
EL10Ac6g15724 Beta vulgaris HOM05D004652 ORTHO05D005634 6.1e-77 292.0 235 57.0
Ah.02g125990 Amaranthus hybridus HOM05D004652 ORTHO05D005634 2.0e-72 276.9 277 50.2
Gohir.D13G040700 Gossypium hirsutum HOM05D004652 ORTHO05D005634 9.4e-70 268.1 207 63.8
Eucgr.I01132 Eucalyptus grandis HOM05D004652 ORTHO05D005634 9.7e-67 258.1 229 57.6
Oeu004436.1 Olea europaea HOM05D004652 ORTHO05D005634 2.2e-63 246.9 322 45.7
FAN26G0096 Fragaria x ananassa HOM05D004652 ORTHO05D005634 5.5e-62 242.3 164 70.1
TAR381G1258 Trochodendron aralioides HOM05D004652 ORTHO05D005634 1.5e-54 217.6 177 60.5
SEGI_25477 Sequoiadendron giganteum HOM05D004652 ORTHO05D005634 4.5e-48 196.1 162 54.9
SEGI_26044 Sequoiadendron giganteum HOM05D004652 ORTHO05D005634 4.5e-48 196.1 162 54.9
Aqoxy2G01254 Aquilegia oxysepala HOM05D004652 ORTHO05D005634 2.5e-46 190.3 140 64.3
Cre13.g563150 Chlamydomonas reinhardtii HOM05D004652 ORTHO05D005634 1.1e-41 174.9 334 32.3
TAR381G1342 Trochodendron aralioides HOM05D004652 ORTHO05D005634 1.0e-39 168.3 112 68.8
ECA248G0229 Erigeron canadensis HOM05D004652 ORTHO05D005634 1.2e-37 161.4 135 59.3
PRCOL_00001748 Prasinoderma coloniale HOM05D004652 ORTHO05D005634 3.7e-34 149.8 314 34.4
MCO15G669 Micromonas commoda HOM05D004652 ORTHO05D005634 1.6e-32 144.4 303 31.0
MCO09G010 Micromonas commoda HOM05D004652 ORTHO05D005634 1.9e-30 137.5 361 31.3
Aqoxy4G02413 Aquilegia oxysepala HOM05D004652 ORTHO05D005634 2.8e-29 133.7 112 57.1
Potri.001G304401 Populus trichocarpa HOM05D004652 ORTHO05D005634 3.4e-27 126.7 129 49.6
TAR381G1519 Trochodendron aralioides HOM05D004652 ORTHO05D005634 4.1e-25 119.8 164 41.5
Sabra07G0040900 Salix brachista HOM05D015619 ORTHO05D009044 4.4e-19 99.8 85 56.5
Lalb_Chr09g0323281 Lupinus albus HOM05D004652 ORTHO05D005634 2.2e-18 97.4 171 35.1
Cc00_g07740 Coffea canephora HOM05D004652 ORTHO05D005634 1.0e-15 88.6 279 25.8
CDE01G0594 Ceratophyllum demersum HOM05D000934 ORTHO05D000746 5.1e-15 86.3 105 43.8


User provided reference genes

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