Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G23110 Arabidopsis thaliana HOM05D005680 ORTHO05D006334 3.2e-44 181.4 93 100.0
Carub.0004s0232 Capsella rubella HOM05D005680 ORTHO05D006334 1.1e-36 156.4 93 88.2
CARHR114400 Cardamine hirsuta HOM05D005680 ORTHO05D006334 9.2e-36 153.3 94 85.1
Thhalv10000392m.g Eutrema salsugineum HOM05D005680 ORTHO05D006334 4.0e-31 137.9 94 75.5
Sp4g02150 Schrenkiella parvula HOM05D005680 ORTHO05D006334 2.7e-27 125.2 94 69.1
THA.LOC104819870 Tarenaya hassleriana HOM05D005680 ORTHO05D006334 4.7e-16 87.8 92 58.7
AL4G12950 Arabidopsis lyrata HOM05D005680 ORTHO05D006334 1.5e-14 82.8 49 89.8
arahy.Tifrunner.gnm1.ann1.Y5V9TA Arachis hypogaea HOM05D005680 ORTHO05D006334 2.6e-14 82.0 74 56.8
arahy.Tifrunner.gnm1.ann1.C6RKPL Arachis hypogaea HOM05D005680 ORTHO05D006334 5.8e-14 80.9 67 61.2
Atru.chr3.206 Acer truncatum HOM05D005680 ORTHO05D006334 2.9e-13 78.6 99 49.5
AL4G12960 Arabidopsis lyrata HOM05D013772 ORTHO05D006334 1.1e-12 76.6 67 58.2
BcaC07g41006 Brassica carinata HOM05D013772 ORTHO05D006334 1.1e-12 76.6 74 60.8
C08p40100 Brassica napus HOM05D013772 ORTHO05D006334 1.1e-12 76.6 74 60.8
BolC8t51580H Brassica oleracea HOM05D013772 ORTHO05D006334 1.1e-12 76.6 74 60.8
Glyma.17G164200 Glycine max HOM05D005680 ORTHO05D006334 1.1e-12 76.6 86 51.2
EL10Ac6g15662 Beta vulgaris HOM05D005680 ORTHO05D006334 2.4e-12 75.5 92 50.0
A09p57080 Brassica napus HOM05D013772 ORTHO05D006334 4.2e-12 74.7 73 60.3
BraA09t41100Z Brassica rapa HOM05D013772 ORTHO05D006334 4.2e-12 74.7 73 60.3
Lalb_Chr05g0226041 Lupinus albus HOM05D005680 ORTHO05D006334 7.1e-12 73.9 90 47.8
Sc25g0001410 Simmondsia chinensis HOM05D005680 ORTHO05D006334 9.3e-12 73.6 73 52.1
CARHR114390 Cardamine hirsuta HOM05D013772 ORTHO05D006334 2.1e-11 72.4 69 58.0
Sp4g02160 Schrenkiella parvula HOM05D013772 ORTHO05D006334 2.1e-11 72.4 74 59.5
TAR376G0914 Trochodendron aralioides HOM05D005680 ORTHO05D006334 2.1e-11 72.4 93 52.7
AUR62038279 Chenopodium quinoa HOM05D005680 ORTHO05D006334 2.7e-11 72.0 96 45.8
FAN02G2432 Fragaria x ananassa HOM05D005680 ORTHO05D006334 2.7e-11 72.0 65 55.4
FAN26G2100 Fragaria x ananassa HOM05D005680 ORTHO05D006334 2.7e-11 72.0 65 55.4
TAR625G0576 Trochodendron aralioides HOM05D005680 ORTHO05D006334 3.5e-11 71.6 93 52.7
Psat4g083200 Pisum sativum HOM05D005680 ORTHO05D006334 4.6e-11 71.2 92 45.7
AUR62003966 Chenopodium quinoa HOM05D005680 ORTHO05D006334 6.0e-11 70.9 96 44.8
CAN.G1075.10 Capsicum annuum HOM05D005680 ORTHO05D006334 7.8e-11 70.5 81 51.9
Ca_13933_v3 Cicer arietinum L. HOM05D005680 ORTHO05D006334 1.7e-10 69.3 92 45.7
FAN19G0782 Fragaria x ananassa HOM05D005680 ORTHO05D006334 1.7e-10 69.3 87 46.0
Sopen02g037260 Solanum pennellii HOM05D005680 ORTHO05D006334 1.7e-10 69.3 91 47.3
Ciclev10026786m.g Citrus clementina HOM05D005680 ORTHO05D006334 3.0e-10 68.6 93 47.3
Lj4g0022522 Lotus japonicus HOM05D005680 ORTHO05D006334 3.0e-10 68.6 71 53.5
Ca_17983_v3 Cicer arietinum L. HOM05D005680 ORTHO05D006334 3.9e-10 68.2 67 53.7
Manes.12G112300 Manihot esculenta HOM05D005680 ORTHO05D006334 3.9e-10 68.2 89 48.3
Oeu013277.1 Olea europaea HOM05D005680 ORTHO05D006334 3.9e-10 68.2 80 51.2
Aqoxy7G01353 Aquilegia oxysepala HOM05D005680 ORTHO05D006334 5.1e-10 67.8 64 53.1
COL.COLO4_11529 Corchorus olitorius HOM05D005680 ORTHO05D006334 5.1e-10 67.8 69 56.5
FAN23G0577 Fragaria x ananassa HOM05D005680 ORTHO05D006334 5.1e-10 67.8 88 44.3
FAN28G2165 Fragaria x ananassa HOM05D005680 ORTHO05D006334 5.1e-10 67.8 87 43.7
PGR102G2721 Punica granatum HOM05D005680 ORTHO05D006334 5.1e-10 67.8 47 68.1
PGSC0003DMG400024942 Solanum tuberosum HOM05D005680 ORTHO05D006334 5.1e-10 67.8 91 46.2
TWI09G1440 Tripterygium wilfordii HOM05D005680 ORTHO05D006334 5.1e-10 67.8 93 46.2
AT2G23120 Arabidopsis thaliana HOM05D013772 ORTHO05D006334 6.6e-10 67.4 71 53.5
Carub.0004s0233 Capsella rubella HOM05D013772 ORTHO05D006334 6.6e-10 67.4 77 51.9
FvH4_1g17140 Fragaria vesca HOM05D005680 ORTHO05D006334 6.6e-10 67.4 87 44.8
Glyma.05G103100 Glycine max HOM05D005680 ORTHO05D006334 6.6e-10 67.4 89 47.2
Medtr4g095330 Medicago truncatula HOM05D005680 ORTHO05D006334 1.1e-09 66.6 91 41.8
TAR628G1700 Trochodendron aralioides HOM05D005680 ORTHO05D006334 1.1e-09 66.6 75 52.0
MD02G1181800 Malus domestica HOM05D005680 ORTHO05D006334 1.5e-09 66.2 92 43.5
Aa31LG7G13780 Aethionema arabicum HOM05D005680 ORTHO05D006334 2.5e-09 65.5 88 46.6
Lj2g0023086 Lotus japonicus HOM05D005680 ORTHO05D006334 2.5e-09 65.5 69 53.6
Phvul.003G237400 Phaseolus vulgaris HOM05D005680 ORTHO05D006334 2.5e-09 65.5 67 55.2
Prupe.6G224700 Prunus persica HOM05D005680 ORTHO05D006334 3.3e-09 65.1 92 43.5
TPR.G23854 Trifolium pratense HOM05D005680 ORTHO05D006334 4.3e-09 64.7 95 43.2
Haze_15319 Corylus avellana HOM05D005680 ORTHO05D006334 5.6e-09 64.3 82 46.3
Nn1g04629 Nelumbo nucifera HOM05D005680 ORTHO05D006334 9.6e-09 63.5 91 46.2
CANSAT01G2162 Cannabis sativa HOM05D005680 ORTHO05D006334 1.6e-08 62.8 80 51.2
Duzib147G0030 Durio zibethinus HOM05D005680 ORTHO05D006334 1.6e-08 62.8 97 44.3
Rhsim10G0104100 Rhododendron simsii HOM05D003166 ORTHO05D003605 1.6e-08 62.8 74 50.0
Sc19g0003710 Simmondsia chinensis HOM05D005680 ORTHO05D006334 1.6e-08 62.8 57 54.4
Atru.chr13.75 Acer truncatum HOM05D005680 ORTHO05D006334 2.1e-08 62.4 95 46.3
Thhalv10000405m.g Eutrema salsugineum HOM05D013772 ORTHO05D006334 2.8e-08 62.0 72 52.8
PSO063G6705 Papaver somniferum HOM05D005680 ORTHO05D006334 3.6e-08 61.6 66 48.5
Aqoxy507s001 Aquilegia oxysepala HOM05D005680 ORTHO05D006334 4.8e-08 61.2 73 47.9
Aqoxy5G00968 Aquilegia oxysepala HOM05D005680 ORTHO05D006334 4.8e-08 61.2 73 47.9
Sabra05G0114900 Salix brachista HOM05D005680 ORTHO05D006334 4.8e-08 61.2 64 50.0
Potri.005G145200 Populus trichocarpa HOM05D005680 ORTHO05D006334 8.1e-08 60.5 68 50.0
Eucgr.H02278 Eucalyptus grandis HOM05D005680 ORTHO05D006334 1.1e-07 60.1 81 43.2
Ah.03g146390 Amaranthus hybridus HOM05D005680 ORTHO05D006334 1.4e-07 59.7 58 53.4
Thecc.01G068000 Theobroma cacao HOM05D005680 ORTHO05D006334 1.4e-07 59.7 97 41.2
Sabra05G0116000 Salix brachista HOM05D005680 ORTHO05D006334 1.8e-07 59.3 64 50.0
ClCG01G017300 Citrullus lanatus HOM05D005680 ORTHO05D006334 2.4e-07 58.9 94 39.4
Eucgr.H02273 Eucalyptus grandis HOM05D005680 ORTHO05D006334 2.4e-07 58.9 81 43.2
THA.LOC104806914 Tarenaya hassleriana HOM05D005680 ORTHO05D006334 2.4e-07 58.9 60 50.0
Psat7g075160 Pisum sativum HOM05D005680 ORTHO05D006334 3.1e-07 58.5 41 65.9
SalBow5G4637 Salvia bowleyana HOM05D005680 ORTHO05D006334 3.1e-07 58.5 84 44.0
RcHm_v2.0_Chr2g0107321 Rosa chinensis HOM05D005680 ORTHO05D006334 4.0e-07 58.2 89 40.4
BcaB06g28712 Brassica carinata HOM05D005680 ORTHO05D006334 5.3e-07 57.8 63 49.2
A04p25910 Brassica napus HOM05D005680 ORTHO05D006334 5.3e-07 57.8 84 45.2
BraA04t18094Z Brassica rapa HOM05D005680 ORTHO05D006334 5.3e-07 57.8 84 45.2
Gohir.D11G205900 Gossypium hirsutum HOM05D005680 ORTHO05D006334 5.3e-07 57.8 93 40.9
Gorai.007G221000 Gossypium raimondii HOM05D005680 ORTHO05D006334 5.3e-07 57.8 93 40.9
Sabra02G0004200 Salix brachista HOM05D005680 ORTHO05D006334 5.3e-07 57.8 96 40.6
MELO3C007608.2 Cucumis melo HOM05D005680 ORTHO05D006334 6.9e-07 57.4 95 42.1
Thhalv10017732m.g Eutrema salsugineum HOM05D005680 ORTHO05D006334 6.9e-07 57.4 63 47.6
BcaC01g05829 Brassica carinata HOM05D005680 ORTHO05D006334 9.0e-07 57.0 75 44.0
BcaC02g07811 Brassica carinata HOM05D005680 ORTHO05D006334 9.0e-07 57.0 63 47.6
C03p22000 Brassica napus HOM05D005680 ORTHO05D006334 9.0e-07 57.0 75 44.0
C04p63190 Brassica napus HOM05D005680 ORTHO05D006334 9.0e-07 57.0 63 47.6
Aa31LG9G13590 Aethionema arabicum HOM05D005680 ORTHO05D006334 1.2e-06 56.6 48 54.2
AT2G33690 Arabidopsis thaliana HOM05D005680 ORTHO05D006334 1.2e-06 56.6 53 50.9
Potri.002G006000 Populus trichocarpa HOM05D005680 ORTHO05D006334 1.2e-06 56.6 96 43.8
MD15G1292700 Malus domestica HOM05D005680 ORTHO05D006334 2.0e-06 55.8 66 45.5
Nn1g04362 Nelumbo nucifera HOM05D005680 ORTHO05D006334 2.0e-06 55.8 63 54.0
HPP92_012496 Vanilla planifolia HOM05D005680 ORTHO05D006334 2.0e-06 55.8 91 42.9
PGR031G2681 Punica granatum HOM05D005680 ORTHO05D006334 2.6e-06 55.5 41 63.4
MELO3C017050.2 Cucumis melo HOM05D005680 ORTHO05D006334 3.4e-06 55.1 81 43.2
Gohir.A11G217600 Gossypium hirsutum HOM05D005680 ORTHO05D006334 3.4e-06 55.1 94 38.3
Sp4g16030 Schrenkiella parvula HOM05D005680 ORTHO05D006334 3.4e-06 55.1 41 61.0
Zm00001eb316370 Zea mays HOM05D031961 ORTHO05D006334 3.4e-06 55.1 88 43.2
Carub.0004s1530 Capsella rubella HOM05D005680 ORTHO05D006334 4.4e-06 54.7 53 50.9
HanXRQChr12g0377211 Helianthus annuus HOM05D005680 ORTHO05D006334 4.4e-06 54.7 91 41.8
QL02p015306 Quercus lobata HOM05D005680 ORTHO05D006334 4.4e-06 54.7 85 42.4
AL4G29360 Arabidopsis lyrata HOM05D005680 ORTHO05D006334 5.8e-06 54.3 53 49.1
BcaB01g03924 Brassica carinata HOM05D005680 ORTHO05D006334 5.8e-06 54.3 75 41.3
Cpa.g.sc88.61 Carica papaya HOM05D005680 ORTHO05D006334 5.8e-06 54.3 65 50.8
ClCG11G018960 Citrullus lanatus HOM05D005680 ORTHO05D006334 7.6e-06 53.9 82 42.7
Medtr8g081540 Medicago truncatula HOM05D005680 ORTHO05D006334 9.9e-06 53.5 41 63.4


User provided reference genes

Program Settings