Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G22860 Arabidopsis thaliana HOM05D001756 ORTHO05D001581 9.6e-43 176.4 88 100.0
AL4G12440 Arabidopsis lyrata HOM05D001756 ORTHO05D001581 7.9e-37 156.8 85 94.1
Carub.0004s0199 Capsella rubella HOM05D001756 ORTHO05D001581 1.2e-29 132.9 84 78.6
CARHR114180 Cardamine hirsuta HOM05D001756 ORTHO05D001581 4.6e-29 131.0 87 78.2
Sp4g01910 Schrenkiella parvula HOM05D001756 ORTHO05D001581 7.9e-29 130.2 86 77.9
Thhalv10000381m.g Eutrema salsugineum HOM05D001756 ORTHO05D001581 1.3e-28 129.4 87 78.2
CARHR114170 Cardamine hirsuta HOM05D001756 ORTHO05D001581 1.1e-25 119.8 87 72.4
BcaB06g27846 Brassica carinata HOM05D001756 ORTHO05D001581 5.3e-25 117.5 86 74.4
C04p52190 Brassica napus HOM05D001756 ORTHO05D001581 6.9e-25 117.1 86 74.4
BcaC02g08589 Brassica carinata HOM05D001756 ORTHO05D001581 9.0e-25 116.7 86 74.4
BolC4t26796H Brassica oleracea HOM05D001756 ORTHO05D001581 9.0e-25 116.7 86 74.4
A04p17430 Brassica napus HOM05D001756 ORTHO05D001581 2.6e-24 115.2 86 73.3
BraA04t17366Z Brassica rapa HOM05D001756 ORTHO05D001581 2.6e-24 115.2 86 73.3
THA.LOC104819883 Tarenaya hassleriana HOM05D001756 ORTHO05D001581 3.0e-20 101.7 91 60.4
THA.LOC104804198 Tarenaya hassleriana HOM05D001756 ORTHO05D001581 4.5e-16 87.8 84 56.0
AT4G37720 Arabidopsis thaliana HOM05D012092 ORTHO05D001581 1.1e-14 83.2 89 57.3
Sp7g35370 Schrenkiella parvula HOM05D012092 ORTHO05D001581 1.9e-14 82.4 91 60.4
CARHR246110 Cardamine hirsuta HOM05D012092 ORTHO05D001581 1.2e-13 79.7 86 61.6
A08p22740 Brassica napus HOM05D012092 ORTHO05D001581 3.6e-13 78.2 90 55.6
BraA08t34243Z Brassica rapa HOM05D012092 ORTHO05D001581 3.6e-13 78.2 90 55.6
Prupe.6G217500 Prunus persica HOM05D001756 ORTHO05D001581 4.6e-13 77.8 84 54.8
BcaB03g12333 Brassica carinata HOM05D012092 ORTHO05D001581 2.3e-12 75.5 88 54.5
Actinidia16413 Actinidia chinensis HOM05D001756 ORTHO05D001581 5.1e-12 74.3 85 49.4
Carub.0007s0253 Capsella rubella HOM05D012092 ORTHO05D001581 8.8e-12 73.6 90 57.8
AL7G12960 Arabidopsis lyrata HOM05D012092 ORTHO05D001581 4.3e-11 71.2 71 59.2
Cpa.g.c33491 Carica papaya HOM05D001756 ORTHO05D001581 1.3e-10 69.7 86 50.0
Rhsim10G0094800 Rhododendron simsii HOM05D001756 ORTHO05D001581 2.2e-10 68.9 85 47.1
RcHm_v2.0_Chr2g0108571 Rosa chinensis HOM05D001756 ORTHO05D001581 4.8e-10 67.8 87 49.4
CARHR158860 Cardamine hirsuta HOM05D001756 ORTHO05D001581 6.3e-10 67.4 87 48.3
Lj7A111T6 Lonicera japonica HOM05D001756 ORTHO05D001581 8.2e-10 67.0 86 46.5
Actinidia04395 Actinidia chinensis HOM05D001756 ORTHO05D001581 1.1e-09 66.6 84 50.0
Actinidia11965 Actinidia chinensis HOM05D001756 ORTHO05D001581 1.1e-09 66.6 88 45.5
Actinidia28000 Actinidia chinensis HOM05D001756 ORTHO05D001581 1.1e-09 66.6 84 52.4
Thhalv10026843m.g Eutrema salsugineum HOM05D012092 ORTHO05D001581 1.1e-09 66.6 91 53.8
FAN26G2568 Fragaria x ananassa HOM05D001756 ORTHO05D001581 1.4e-09 66.2 88 50.0
Sabra07G0005100 Salix brachista HOM05D001756 ORTHO05D001581 1.4e-09 66.2 89 48.3
Actinidia34539 Actinidia chinensis HOM05D001756 ORTHO05D001581 3.1e-09 65.1 86 45.3
A09p42920 Brassica napus HOM05D001756 ORTHO05D001581 3.1e-09 65.1 87 47.1
BraA09t39759Z Brassica rapa HOM05D001756 ORTHO05D001581 3.1e-09 65.1 87 47.1
CSS0040959 Camellia sinensis var. sinensis HOM05D001756 ORTHO05D001581 3.1e-09 65.1 86 50.0
FAN23G1434 Fragaria x ananassa HOM05D001756 ORTHO05D001581 3.1e-09 65.1 89 48.3
Hma1.2p1_1760F.1_g301210 Hydrangea macrophylla HOM05D001756 ORTHO05D001581 3.1e-09 65.1 86 46.5
CSS0000381 Camellia sinensis var. sinensis HOM05D001756 ORTHO05D001581 4.1e-09 64.7 86 47.7
Eucgr.H02325 Eucalyptus grandis HOM05D001756 ORTHO05D001581 4.1e-09 64.7 90 48.9
Potri.007G006800 Populus trichocarpa HOM05D001756 ORTHO05D001581 4.1e-09 64.7 89 46.1
Sabra14G0006400 Salix brachista HOM05D001756 ORTHO05D001581 4.1e-09 64.7 83 49.4
Dinv26955 Davidia involucrata HOM05D001756 ORTHO05D001581 5.3e-09 64.3 89 50.6
Eucgr.H02324 Eucalyptus grandis HOM05D001756 ORTHO05D001581 5.3e-09 64.3 90 46.7
Thhalv10010875m.g Eutrema salsugineum HOM05D001756 ORTHO05D001581 5.3e-09 64.3 87 46.0
Hma1.2p1_2434F.1_g322120 Hydrangea macrophylla HOM05D001756 ORTHO05D001581 5.3e-09 64.3 86 46.5
Lj4A164T42 Lonicera japonica HOM05D001756 ORTHO05D001581 5.3e-09 64.3 86 44.2
Sp5g12310 Schrenkiella parvula HOM05D001756 ORTHO05D001581 6.9e-09 63.9 87 47.1
BcaNung02085 Brassica carinata HOM05D012092 ORTHO05D001581 9.1e-09 63.5 84 52.4
C07p62600 Brassica napus HOM05D012092 ORTHO05D001581 9.1e-09 63.5 84 52.4
BolC7t46675H Brassica oleracea HOM05D012092 ORTHO05D001581 9.1e-09 63.5 84 52.4
A01p24530 Brassica napus HOM05D001756 ORTHO05D001581 1.2e-08 63.2 87 48.3
A03p65500 Brassica napus HOM05D012092 ORTHO05D001581 1.2e-08 63.2 84 52.4
BraA01t02363Z Brassica rapa HOM05D001756 ORTHO05D001581 1.2e-08 63.2 87 48.3
BraA03t15602Z Brassica rapa HOM05D012092 ORTHO05D001581 1.2e-08 63.2 84 52.4
Hma1.2p1_0424F.1_g150520 Hydrangea macrophylla HOM05D001756 ORTHO05D001581 1.2e-08 63.2 86 47.7
AL5G29770 Arabidopsis lyrata HOM05D001756 ORTHO05D001581 1.5e-08 62.8 86 46.5
Ca_24672_v3 Cicer arietinum L. HOM05D001756 ORTHO05D001581 1.5e-08 62.8 83 45.8
Ca_30012_v3 Cicer arietinum L. HOM05D001756 ORTHO05D001581 1.5e-08 62.8 83 45.8
Dinv09540 Davidia involucrata HOM05D001756 ORTHO05D001581 1.5e-08 62.8 85 43.5
C08p24800 Brassica napus HOM05D001756 ORTHO05D001581 2.0e-08 62.4 87 46.0
BolC8t50097H Brassica oleracea HOM05D001756 ORTHO05D001581 2.0e-08 62.4 87 46.0
BcaB05g23153 Brassica carinata HOM05D001756 ORTHO05D001581 2.6e-08 62.0 78 50.0
Atru.chr3.1054 Acer truncatum HOM05D001756 ORTHO05D001581 3.4e-08 61.6 83 45.8
CiPaw.01G002400 Carya illinoinensis HOM05D001756 ORTHO05D001581 3.4e-08 61.6 88 48.9
Dinv44936 Davidia involucrata HOM05D001756 ORTHO05D001581 4.5e-08 61.2 87 48.3
C01p30590 Brassica napus HOM05D001756 ORTHO05D001581 5.9e-08 60.8 87 47.1
BolC1t02995H Brassica oleracea HOM05D001756 ORTHO05D001581 5.9e-08 60.8 87 47.1
CiPaw.02G001200 Carya illinoinensis HOM05D001756 ORTHO05D001581 5.9e-08 60.8 89 47.2
AUR62004029 Chenopodium quinoa HOM05D001756 ORTHO05D001581 5.9e-08 60.8 86 45.3
AUR62007537 Chenopodium quinoa HOM05D001756 ORTHO05D001581 5.9e-08 60.8 86 50.0
Psat2g172320 Pisum sativum HOM05D001756 ORTHO05D001581 5.9e-08 60.8 84 41.7
Potri.002G116300 Populus trichocarpa HOM05D001756 ORTHO05D001581 5.9e-08 60.8 85 38.8
Potri.014G006900 Populus trichocarpa HOM05D001756 ORTHO05D001581 5.9e-08 60.8 84 45.2
FvH4_2g32750 Fragaria vesca HOM05D001756 ORTHO05D001581 7.7e-08 60.5 92 46.7
FAN24G1728 Fragaria x ananassa HOM05D001756 ORTHO05D001581 7.7e-08 60.5 92 46.7
Lj5g0025862 Lotus japonicus HOM05D001756 ORTHO05D001581 7.7e-08 60.5 87 47.1
BcaC07g39442 Brassica carinata HOM05D001756 ORTHO05D001581 1.0e-07 60.1 78 48.7
CSS0048277 Camellia sinensis var. sinensis HOM05D001756 ORTHO05D001581 1.0e-07 60.1 85 42.4
CSS0049317 Camellia sinensis var. sinensis HOM05D001756 ORTHO05D001581 1.0e-07 60.1 85 42.4
THA.LOC104827714 Tarenaya hassleriana HOM05D001756 ORTHO05D001581 1.0e-07 60.1 83 48.2
Dinv16070 Davidia involucrata HOM05D001756 ORTHO05D001581 1.3e-07 59.7 86 45.3
Glyma.01G195700 Glycine max HOM05D001756 ORTHO05D001581 1.3e-07 59.7 89 41.6
QL12p038416 Quercus lobata HOM05D001756 ORTHO05D001581 1.3e-07 59.7 88 45.5
Thecc.08G085400 Theobroma cacao HOM05D001756 ORTHO05D001581 1.3e-07 59.7 86 44.2
TAR628G0014 Trochodendron aralioides HOM05D001756 ORTHO05D001581 1.3e-07 59.7 86 47.7
AT3G49780 Arabidopsis thaliana HOM05D001756 ORTHO05D001581 1.7e-07 59.3 86 45.3
arahy.Tifrunner.gnm1.ann1.0BB13E Arachis hypogaea HOM05D001756 ORTHO05D001581 1.7e-07 59.3 46 63.0
Carub.0005s1613 Capsella rubella HOM05D001756 ORTHO05D001581 1.7e-07 59.3 87 44.8
Hma1.2p1_1051F.1_g252120 Hydrangea macrophylla HOM05D001756 ORTHO05D001581 1.7e-07 59.3 86 46.5
Nitab4.5_0002525g0020 Nicotiana tabacum HOM05D001756 ORTHO05D001581 1.7e-07 59.3 90 41.1
vmacro01948 Vaccinium macrocarpon HOM05D001756 ORTHO05D001581 1.7e-07 59.3 85 47.1
BcaB01g00674 Brassica carinata HOM05D001756 ORTHO05D001581 2.2e-07 58.9 78 48.7
GSVIVG01004437001 Vitis vinifera HOM05D001756 ORTHO05D001581 2.2e-07 58.9 83 43.4
Actinidia00357 Actinidia chinensis HOM05D001756 ORTHO05D001581 2.9e-07 58.5 86 44.2
BcaC09g49971 Brassica carinata HOM05D001756 ORTHO05D001581 2.9e-07 58.5 78 50.0
COL.COLO4_28472 Corchorus olitorius HOM05D001756 ORTHO05D001581 2.9e-07 58.5 86 44.2
Glyma.14G089063 Glycine max HOM05D001756 ORTHO05D001581 2.9e-07 58.5 85 38.8
PSO017G5266 Papaver somniferum HOM05D001756 ORTHO05D001581 2.9e-07 58.5 81 46.9
Duzib132G0635 Durio zibethinus HOM05D001756 ORTHO05D001581 3.8e-07 58.2 86 43.0
HanXRQChr12g0376281 Helianthus annuus HOM05D001756 ORTHO05D001581 3.8e-07 58.2 78 51.3
Lalb_Chr06g0164991 Lupinus albus HOM05D001756 ORTHO05D001581 3.8e-07 58.2 70 47.1
MD02G1189200 Malus domestica HOM05D001756 ORTHO05D001581 3.8e-07 58.2 85 45.9
PGR004G0933 Punica granatum HOM05D001756 ORTHO05D001581 3.8e-07 58.2 90 44.4
RhsimUnG0041200 Rhododendron simsii HOM05D001756 ORTHO05D001581 3.8e-07 58.2 85 44.7
RhsimUnG0123200 Rhododendron simsii HOM05D001756 ORTHO05D001581 3.8e-07 58.2 85 44.7
CSS0039448 Camellia sinensis var. sinensis HOM05D001756 ORTHO05D001581 5.0e-07 57.8 87 47.1
Nn5g30652 Nelumbo nucifera HOM05D001756 ORTHO05D001581 5.0e-07 57.8 89 43.8
RhsimUnG0122800 Rhododendron simsii HOM05D001756 ORTHO05D001581 5.0e-07 57.8 88 43.2
CsaV3_6G044290 Cucumis sativus L. HOM05D001756 ORTHO05D001581 6.5e-07 57.4 78 50.0
MBI16_g16475_MAGBIO Magnolia biondii HOM05D001756 ORTHO05D001581 6.5e-07 57.4 88 42.0
MBI16_g32087_MAGBIO Magnolia biondii HOM05D001756 ORTHO05D001581 6.5e-07 57.4 88 42.0
Thecc.01G075600 Theobroma cacao HOM05D001756 ORTHO05D001581 6.5e-07 57.4 86 41.9
Thecc.02G119700 Theobroma cacao HOM05D001756 ORTHO05D001581 6.5e-07 57.4 87 43.7
TAR376G0419 Trochodendron aralioides HOM05D001756 ORTHO05D001581 6.5e-07 57.4 86 46.5
vmacro01947 Vaccinium macrocarpon HOM05D001756 ORTHO05D001581 6.5e-07 57.4 86 44.2
Glyma.11G046000 Glycine max HOM05D001756 ORTHO05D001581 8.5e-07 57.0 89 38.2
Atru.chr13.861 Acer truncatum HOM05D001756 ORTHO05D001581 1.1e-06 56.6 86 46.5
CAN.G1343.2 Capsicum annuum HOM05D001756 ORTHO05D001581 1.1e-06 56.6 79 44.3
Duzib093G0345 Durio zibethinus HOM05D001756 ORTHO05D001581 1.1e-06 56.6 86 45.3
Duzib116G0348 Durio zibethinus HOM05D001756 ORTHO05D001581 1.1e-06 56.6 86 43.0
MD15G1300000 Malus domestica HOM05D001756 ORTHO05D001581 1.1e-06 56.6 82 47.6
Manes.13G109600 Manihot esculenta HOM05D001756 ORTHO05D001581 1.1e-06 56.6 82 46.3
HPP92_015705 Vanilla planifolia HOM05D001756 ORTHO05D001581 1.1e-06 56.6 88 44.3
HPP92_026657 Vanilla planifolia HOM05D001756 ORTHO05D001581 1.1e-06 56.6 88 44.3
Glyma.17G233400 Glycine max HOM05D001756 ORTHO05D001581 1.4e-06 56.2 86 41.9
RcHm_v2.0_Chr6g0309921 Rosa chinensis HOM05D001756 ORTHO05D001581 1.4e-06 56.2 91 44.0
Sed0002457 Sechium edule HOM05D001756 ORTHO05D001581 1.4e-06 56.2 61 44.3
arahy.Tifrunner.gnm1.ann1.YSS1PU Arachis hypogaea HOM05D001756 ORTHO05D001581 1.9e-06 55.8 46 60.9
CSS0048145 Camellia sinensis var. sinensis HOM05D001756 ORTHO05D001581 1.9e-06 55.8 88 42.0
Cfa004702 Carpinus fangiana HOM05D001756 ORTHO05D001581 1.9e-06 55.8 88 45.5
Medtr1g106030 Medicago truncatula HOM05D001756 ORTHO05D001581 1.9e-06 55.8 37 70.3
Haze_10304 Corylus avellana HOM05D001756 ORTHO05D001581 2.5e-06 55.5 88 45.5
ECA238G4790 Erigeron canadensis HOM05D001756 ORTHO05D001581 2.5e-06 55.5 78 43.6
ECA246G3808 Erigeron canadensis HOM05D001756 ORTHO05D001581 2.5e-06 55.5 78 43.6
Hund13962 Selenicereus undatus HOM05D001756 ORTHO05D001581 2.5e-06 55.5 91 45.1
GSVIVG01009309001 Vitis vinifera HOM05D001756 ORTHO05D001581 2.5e-06 55.5 87 44.8
Duzib264G0169 Durio zibethinus HOM05D001756 ORTHO05D001581 3.2e-06 55.1 89 41.6
Gohir.A12G078300 Gossypium hirsutum HOM05D001756 ORTHO05D001581 3.2e-06 55.1 89 41.6
Oeu025312.1 Olea europaea HOM05D001756 ORTHO05D001581 3.2e-06 55.1 92 42.4
PGR142G2395 Punica granatum HOM05D001756 ORTHO05D001581 3.2e-06 55.1 79 41.8
Ciclev10026870m.g Citrus clementina HOM05D001756 ORTHO05D001581 4.2e-06 54.7 82 45.1
Eucgr.I00676 Eucalyptus grandis HOM05D001756 ORTHO05D001581 4.2e-06 54.7 84 44.0
FAN20G1648 Fragaria x ananassa HOM05D001756 ORTHO05D001581 4.2e-06 54.7 77 46.8
Lalb_Chr09g0323711 Lupinus albus HOM05D001756 ORTHO05D001581 4.2e-06 54.7 86 37.2
QL06p038990 Quercus lobata HOM05D001756 ORTHO05D001581 4.2e-06 54.7 88 43.2
Rhsim08G0091400 Rhododendron simsii HOM05D001756 ORTHO05D001581 4.2e-06 54.7 78 46.2
Rhsim08G0091500 Rhododendron simsii HOM05D001756 ORTHO05D001581 4.2e-06 54.7 84 44.0
TPR.G21156 Trifolium pratense HOM05D001756 ORTHO05D001581 4.2e-06 54.7 37 64.9
HPP92_007708 Vanilla planifolia HOM05D001756 ORTHO05D001581 4.2e-06 54.7 81 46.9
GSVIVG01037055001 Vitis vinifera HOM05D001756 ORTHO05D001581 4.2e-06 54.7 87 44.8
Duzib147G1196 Durio zibethinus HOM05D001756 ORTHO05D001581 5.5e-06 54.3 88 43.2
Glyma.17G233500 Glycine max HOM05D001756 ORTHO05D001581 5.5e-06 54.3 85 37.6
Manes.07G057300 Manihot esculenta HOM05D001756 ORTHO05D001581 5.5e-06 54.3 84 44.0
PSO170G3613 Papaver somniferum HOM05D001756 ORTHO05D001581 5.5e-06 54.3 81 44.4
Sabra02G0091600 Salix brachista HOM05D001756 ORTHO05D001581 5.5e-06 54.3 79 40.5
Gorai.008G085100 Gossypium raimondii HOM05D001756 ORTHO05D001581 7.2e-06 53.9 89 41.6
Hma1.2p1_0210F.1_g089330 Hydrangea macrophylla HOM05D001756 ORTHO05D001581 7.2e-06 53.9 84 46.4
MBI16_g27034_MAGBIO Magnolia biondii HOM05D001756 ORTHO05D001581 7.2e-06 53.9 67 46.3
TWI74G0998 Tripterygium wilfordii HOM05D001756 ORTHO05D001581 7.2e-06 53.9 91 44.0
vmacro18016 Vaccinium macrocarpon HOM05D001756 ORTHO05D001581 7.2e-06 53.9 80 42.5
arahy.Tifrunner.gnm1.ann1.IGD037 Arachis hypogaea HOM05D001756 ORTHO05D001581 9.4e-06 53.5 46 60.9
CANSAT25G3420 Cannabis sativa HOM05D001756 ORTHO05D001581 9.4e-06 53.5 86 44.2
CiPaw.07G172800 Carya illinoinensis HOM05D001756 ORTHO05D001581 9.4e-06 53.5 85 47.1
CDE04G0180 Ceratophyllum demersum HOM05D001756 ORTHO05D001581 9.4e-06 53.5 85 38.8
FAN27G1437 Fragaria x ananassa HOM05D001756 ORTHO05D001581 9.4e-06 53.5 92 44.6
Gohir.D12G076500 Gossypium hirsutum HOM05D001756 ORTHO05D001581 9.4e-06 53.5 89 41.6
Prupe.1G420000 Prunus persica HOM05D001756 ORTHO05D001581 9.4e-06 53.5 82 42.7


User provided reference genes

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