Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G21970 Arabidopsis thaliana HOM05D006985 ORTHO05D008749 1.3e-106 389.8 203 100.0
AL4G11290 Arabidopsis lyrata HOM05D006985 ORTHO05D008749 6.3e-98 360.9 204 92.2
Carub.0004s0111 Capsella rubella HOM05D006985 ORTHO05D008749 1.2e-96 356.7 206 92.2
Sp4g01050 Schrenkiella parvula HOM05D006985 ORTHO05D008749 5.9e-96 354.4 204 88.7
C08p41110 Brassica napus HOM05D006985 ORTHO05D008749 2.5e-94 349.0 203 88.2
BolC8t51677H Brassica oleracea HOM05D006985 ORTHO05D008749 2.5e-94 349.0 203 88.2
BraA09t41180Z Brassica rapa HOM05D006985 ORTHO05D008749 2.5e-94 349.0 203 88.2
A09p57880 Brassica napus HOM05D006985 ORTHO05D008749 3.3e-94 348.6 203 88.2
BcaC07g41109 Brassica carinata HOM05D006985 ORTHO05D008749 7.2e-94 347.4 203 87.7
BcaB08g35014 Brassica carinata HOM05D006985 ORTHO05D008749 8.9e-92 340.5 206 85.4
Thhalv10000325m.g Eutrema salsugineum HOM05D006985 ORTHO05D008749 4.6e-88 328.2 209 85.2
Aa31LG7G14690 Aethionema arabicum HOM05D006985 ORTHO05D008749 1.2e-75 287.0 206 75.7
THA.LOC104804144 Tarenaya hassleriana HOM05D006985 ORTHO05D008749 2.6e-75 285.8 207 73.4
Rhsim10G0013600 Rhododendron simsii HOM05D006985 ORTHO05D008749 1.9e-57 226.5 188 62.2
Sabra05G0069300 Salix brachista HOM05D006985 ORTHO05D008749 2.4e-57 226.1 202 57.9
Potri.005G084200 Populus trichocarpa HOM05D006985 ORTHO05D008749 3.2e-57 225.7 206 57.3
Thecc.01G112400 Theobroma cacao HOM05D006985 ORTHO05D008749 1.6e-56 223.4 209 59.3
COL.COLO4_11016 Corchorus olitorius HOM05D006985 ORTHO05D008749 2.7e-56 222.6 206 59.7
QL06p032211 Quercus lobata HOM05D006985 ORTHO05D008749 4.6e-56 221.9 210 58.1
CSS0005033 Camellia sinensis var. sinensis HOM05D006985 ORTHO05D008749 7.8e-56 221.1 192 63.0
Rhsim08G0007300 Rhododendron simsii HOM05D006985 ORTHO05D008749 7.8e-56 221.1 188 61.7
Rhsim08G0006600 Rhododendron simsii HOM05D006985 ORTHO05D008749 1.0e-55 220.7 203 59.1
Gohir.A02G134801 Gossypium hirsutum HOM05D006985 ORTHO05D008749 2.3e-55 219.5 205 62.0
Duzib147G0418 Durio zibethinus HOM05D006985 ORTHO05D008749 3.9e-55 218.8 211 56.9
Eucgr.I00326 Eucalyptus grandis HOM05D006985 ORTHO05D008749 8.7e-55 217.6 209 57.9
Gohir.D03G045800 Gossypium hirsutum HOM05D006985 ORTHO05D008749 8.7e-55 217.6 204 61.8
Gorai.003G047000 Gossypium raimondii HOM05D006985 ORTHO05D008749 8.7e-55 217.6 204 61.8
arahy.Tifrunner.gnm1.ann1.MHK3H7 Arachis hypogaea HOM05D006985 ORTHO05D008749 1.1e-54 217.2 204 60.3
arahy.Tifrunner.gnm1.ann1.7DG6XK Arachis hypogaea HOM05D006985 ORTHO05D008749 1.9e-54 216.5 204 60.3
CSS0027796 Camellia sinensis var. sinensis HOM05D006985 ORTHO05D008749 2.5e-54 216.1 191 62.3
Lj2A564T40 Lonicera japonica HOM05D006985 ORTHO05D008749 2.5e-54 216.1 205 57.6
FvH4_1g22220 Fragaria vesca HOM05D006985 ORTHO05D008749 3.3e-54 215.7 209 57.4
Glyma.08G141300 Glycine max HOM05D006985 ORTHO05D008749 3.3e-54 215.7 208 55.8
Cfa002750 Carpinus fangiana HOM05D006985 ORTHO05D008749 1.3e-53 213.8 207 54.1
FAN23G1894 Fragaria x ananassa HOM05D006985 ORTHO05D008749 1.3e-53 213.8 209 57.4
RcHm_v2.0_Chr2g0116361 Rosa chinensis HOM05D006985 ORTHO05D008749 1.3e-53 213.8 203 57.1
Glyma.05G183500 Glycine max HOM05D006985 ORTHO05D008749 1.6e-53 213.4 207 57.5
Actinidia28892 Actinidia chinensis HOM05D006985 ORTHO05D008749 2.1e-53 213.0 169 64.5
Haze_25036 Corylus avellana HOM05D006985 ORTHO05D008749 2.8e-53 212.6 207 54.6
GSVIVG01022222001 Vitis vinifera HOM05D006985 ORTHO05D008749 6.2e-53 211.5 207 55.1
Lalb_Chr13g0296201 Lupinus albus HOM05D006985 ORTHO05D008749 1.4e-52 210.3 203 55.7
TAR625G1052 Trochodendron aralioides HOM05D006985 ORTHO05D008749 3.1e-52 209.1 206 56.3
Nn5g28916 Nelumbo nucifera HOM05D006985 ORTHO05D008749 1.2e-51 207.2 203 54.2
PGR004G1495 Punica granatum HOM05D006985 ORTHO05D008749 1.5e-51 206.8 217 54.8
CiPaw.04G092100 Carya illinoinensis HOM05D006985 ORTHO05D008749 2.0e-51 206.5 206 53.9
TWI53G2009 Tripterygium wilfordii HOM05D006985 ORTHO05D008749 2.0e-51 206.5 206 53.9
MD15G1333400 Malus domestica HOM05D006985 ORTHO05D008749 2.6e-51 206.1 197 58.4
Manes.12G142400 Manihot esculenta HOM05D006985 ORTHO05D008749 2.6e-51 206.1 207 54.6
Nitab4.5_0000471g0030 Nicotiana tabacum HOM05D006985 ORTHO05D008749 3.4e-51 205.7 206 55.8
CAN.G276.1 Capsicum annuum HOM05D006985 ORTHO05D008749 4.4e-51 205.3 205 56.1
Duzib187G0142 Durio zibethinus HOM05D006985 ORTHO05D008749 5.8e-51 204.9 204 57.4
CANSAT01G0007 Cannabis sativa HOM05D006985 ORTHO05D008749 2.2e-50 203.0 210 54.8
Peaxi162Scf00323g00052 Petunia axillaris HOM05D006985 ORTHO05D008749 3.8e-50 202.2 188 58.5
ECA238G4202 Erigeron canadensis HOM05D006985 ORTHO05D008749 4.9e-50 201.8 204 53.4
Dinv42695 Davidia involucrata HOM05D006985 ORTHO05D008749 8.4e-50 201.1 197 57.9
Lj4g0016816 Lotus japonicus HOM05D006985 ORTHO05D008749 8.4e-50 201.1 204 56.4
Sed0020932 Sechium edule HOM05D006985 ORTHO05D008749 8.4e-50 201.1 204 54.9
VMungo0251G1437 Vigna mungo HOM05D006985 ORTHO05D008749 8.4e-50 201.1 204 54.4
PGSC0003DMG400016590 Solanum tuberosum HOM05D006985 ORTHO05D008749 1.1e-49 200.7 186 58.6
Hma1.2p1_0375F.1_g138690 Hydrangea macrophylla HOM05D006985 ORTHO05D008749 1.4e-49 200.3 160 65.0
Phvul.002G264600 Phaseolus vulgaris HOM05D006985 ORTHO05D008749 4.2e-49 198.7 159 62.3
Ciclev10026526m.g Citrus clementina HOM05D006985 ORTHO05D008749 5.4e-49 198.4 211 53.1
Atru.chr4.358 Acer truncatum HOM05D006985 ORTHO05D008749 1.2e-48 197.2 207 55.6
Sopen04g023520 Solanum pennellii HOM05D006985 ORTHO05D008749 1.6e-48 196.8 184 57.6
Cpa.g.sc196.10 Carica papaya HOM05D006985 ORTHO05D008749 2.1e-48 196.4 157 65.6
Lsat_1_v5_gn_2_67381 Lactuca sativa HOM05D006985 ORTHO05D008749 2.7e-48 196.1 206 53.9
MELO3C007486.2 Cucumis melo HOM05D006985 ORTHO05D008749 3.5e-48 195.7 205 52.7
Solyc04g053130.4 Solanum lycopersicum HOM05D006985 ORTHO05D008749 3.5e-48 195.7 184 57.6
MBI02_g45734_MAGBIO Magnolia biondii HOM05D006985 ORTHO05D008749 1.0e-47 194.1 202 53.0
Prupe.6G173300 Prunus persica HOM05D006985 ORTHO05D008749 1.3e-47 193.7 204 52.9
Cc07_g16120 Coffea canephora HOM05D006985 ORTHO05D008749 1.7e-47 193.4 162 61.1
CsaV3_6G042430 Cucumis sativus L. HOM05D006985 ORTHO05D008749 3.0e-47 192.6 207 51.2
vmacro18630 Vaccinium macrocarpon HOM05D006985 ORTHO05D008749 3.0e-47 192.6 200 52.0
Oeu028373.1 Olea europaea HOM05D006985 ORTHO05D008749 5.1e-47 191.8 187 55.1
Oeu030683.1 Olea europaea HOM05D006985 ORTHO05D008749 6.6e-47 191.4 206 51.5
HanXRQChr14g0446291 Helianthus annuus HOM05D006985 ORTHO05D008749 1.5e-46 190.3 207 52.2
SalBow6G7167 Salvia bowleyana HOM05D006985 ORTHO05D008749 7.3e-46 188.0 171 59.1
ClCG01G016160 Citrullus lanatus HOM05D006985 ORTHO05D008749 9.6e-46 187.6 195 53.3
MBI02_g20708_MAGBIO Magnolia biondii HOM05D006985 ORTHO05D008749 9.6e-46 187.6 199 51.8
Ah.03g141710 Amaranthus hybridus HOM05D006985 ORTHO05D008749 2.8e-45 186.0 197 51.8
DCAR_010078 Daucus carota HOM05D006985 ORTHO05D008749 6.2e-45 184.9 160 58.8
Sc16g0004160 Simmondsia chinensis HOM05D006985 ORTHO05D008749 8.1e-45 184.5 200 53.0
Migut.H02428 Erythranthe guttata HOM05D006985 ORTHO05D008749 2.4e-44 183.0 161 59.0
EL10Ac6g14751 Beta vulgaris HOM05D006985 ORTHO05D008749 3.1e-44 182.6 165 59.4
MSTRG.23313 Avicennia marina HOM05D006985 ORTHO05D008749 4.0e-44 182.2 191 50.3
AUR62003309 Chenopodium quinoa HOM05D006985 ORTHO05D008749 5.3e-44 181.8 197 51.3
AUR62016276 Chenopodium quinoa HOM05D006985 ORTHO05D008749 5.3e-44 181.8 197 51.8
Ca_17697_v3 Cicer arietinum L. HOM05D006985 ORTHO05D008749 6.9e-44 181.4 200 54.0
SGA_v2.0_scaffold51G18747 Striga asiatica HOM05D006985 ORTHO05D008749 6.9e-44 181.4 189 55.6
Dinv19490 Davidia involucrata HOM05D006985 ORTHO05D008749 1.2e-43 180.6 147 63.3
Psat7g051440 Pisum sativum HOM05D006985 ORTHO05D008749 3.4e-43 179.1 194 55.2
Hund03540 Selenicereus undatus HOM05D006985 ORTHO05D008749 2.2e-42 176.4 164 56.1
CARHR113060 Cardamine hirsuta HOM05D006985 ORTHO05D008749 8.4e-42 174.5 92 93.5
Zm00001eb431840 Zea mays HOM05D006985 ORTHO05D008749 1.4e-41 173.7 164 53.7
CDE02G4368 Ceratophyllum demersum HOM05D006985 ORTHO05D008749 1.9e-41 173.3 154 55.8
MSTRG.3810 Avicennia marina HOM05D006985 ORTHO05D008749 3.2e-41 172.6 153 55.6
Os04g0639200 Oryza sativa ssp. japonica HOM05D006985 ORTHO05D008749 5.5e-41 171.8 204 49.5
CARHR113050 Cardamine hirsuta HOM05D006985 ORTHO05D008749 2.1e-40 169.9 118 81.4
Aqoxy7G01607 Aquilegia oxysepala HOM05D006985 ORTHO05D008749 1.3e-39 167.2 157 52.2
Aqoxy5G01954 Aquilegia oxysepala HOM05D006985 ORTHO05D008749 2.5e-38 162.9 157 51.6
HPP92_013077 Vanilla planifolia HOM05D006985 ORTHO05D008749 2.5e-38 162.9 157 52.9
PSO210G1005 Papaver somniferum HOM05D006985 ORTHO05D008749 4.8e-37 158.7 181 45.3
ATR0564G194 Amborella trichopoda HOM05D006985 ORTHO05D008749 3.8e-34 149.1 176 45.5
SEGI_00004 Sequoiadendron giganteum HOM05D006985 ORTHO05D008749 2.6e-27 126.3 152 42.8
PSO170G0586 Papaver somniferum HOM05D006985 ORTHO05D008749 1.1e-20 104.4 123 48.0
Hund19658 Selenicereus undatus HOM05D006985 ORTHO05D008749 1.1e-20 104.4 117 45.3
SMO174G0105 Selaginella moellendorffii HOM05D006985 ORTHO05D008749 3.8e-18 95.9 146 34.9
SMO356G0636 Selaginella moellendorffii HOM05D006985 ORTHO05D008749 8.5e-18 94.7 144 34.0
AagrBONN_evm.TU.Sc2ySwM_362.2621 Anthoceros agrestis HOM05D006985 ORTHO05D008749 7.9e-16 88.2 149 34.2
FAN26G1540 Fragaria x ananassa HOM05D000436 ORTHO05D000678 6.7e-15 85.1 119 48.7
CBR_g770 Chara braunii HOM05D006985 ORTHO05D008749 3.1e-12 76.3 141 34.0
Pp3c16_13700 Physcomitrium patens HOM05D006985 ORTHO05D008749 5.3e-12 75.5 150 31.3
Mapoly0007s0046 Marchantia polymorpha HOM05D006985 ORTHO05D008749 2.6e-11 73.2 146 32.2
Pp3c27_3810 Physcomitrium patens HOM05D006985 ORTHO05D008749 3.4e-11 72.8 141 32.6
unitig_88.g27736 Utricularia gibba HOM05D006985 ORTHO05D008749 7.7e-11 71.6 69 53.6
CDE08G1171 Ceratophyllum demersum HOM05D000290 ORTHO05D009072 1.4e-09 67.4 72 52.8


User provided reference genes

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