Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G21870 Arabidopsis thaliana HOM05D002293 ORTHO05D005475 5.0e-126 454.5 241 100.0
Carub.0004s0090 Capsella rubella HOM05D002293 ORTHO05D005475 2.0e-122 442.6 241 97.9
CARHR112910 Cardamine hirsuta HOM05D002293 ORTHO05D005475 2.0e-119 432.6 241 94.2
BcaB06g27791 Brassica carinata HOM05D002293 ORTHO05D005475 2.2e-118 429.1 241 93.8
Thhalv10000307m.g Eutrema salsugineum HOM05D002293 ORTHO05D005475 1.5e-117 426.4 241 92.5
BcaC02g08759 Brassica carinata HOM05D002293 ORTHO05D005475 1.9e-117 426.0 241 93.4
C04p50970 Brassica napus HOM05D002293 ORTHO05D005475 1.9e-117 426.0 241 93.4
BcaB08g35009 Brassica carinata HOM05D002293 ORTHO05D005475 9.4e-117 423.7 241 92.9
BraA04t17281Z Brassica rapa HOM05D002293 ORTHO05D005475 9.4e-117 423.7 241 92.5
Sp4g00960 Schrenkiella parvula HOM05D002293 ORTHO05D005475 2.1e-116 422.5 241 92.1
C08p41150 Brassica napus HOM05D002293 ORTHO05D005475 1.0e-115 420.2 241 92.1
A04p16460 Brassica napus HOM05D002293 ORTHO05D005475 2.3e-115 419.1 242 92.1
BolC4t26688H Brassica oleracea HOM05D002293 ORTHO05D005475 1.2e-114 416.8 246 90.7
BcaC07g41114 Brassica carinata HOM05D002293 ORTHO05D005475 1.7e-113 412.9 242 91.3
BolC8t51682H Brassica oleracea HOM05D002293 ORTHO05D005475 1.7e-113 412.9 242 91.3
BraA09t41184Z Brassica rapa HOM05D002293 ORTHO05D005475 1.7e-113 412.9 244 91.4
A09p57920 Brassica napus HOM05D002293 ORTHO05D005475 1.1e-112 410.2 244 91.0
Aa31LG7G14740 Aethionema arabicum HOM05D002293 ORTHO05D005475 1.4e-112 409.8 241 88.4
THA.LOC104804134 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 4.6e-103 378.3 241 82.6
THA.LOC104824852 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 5.0e-102 374.8 241 81.3
THA.LOC104807725 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 2.5e-101 372.5 243 81.5
AL4G11180 Arabidopsis lyrata HOM05D002293 ORTHO05D005475 4.0e-99 365.2 196 99.0
MD15G1331100 Malus domestica HOM05D002293 ORTHO05D005475 3.0e-94 349.0 241 75.9
GSVIVG01022249001 Vitis vinifera HOM05D002293 ORTHO05D005475 3.0e-94 349.0 241 73.9
CiPaw.04G090200 Carya illinoinensis HOM05D002293 ORTHO05D005475 1.5e-93 346.7 243 73.7
MD01G1021000 Malus domestica HOM05D002293 ORTHO05D005475 4.3e-93 345.1 241 74.7
Prupe.6G169300 Prunus persica HOM05D002293 ORTHO05D005475 5.6e-93 344.7 241 75.1
QL06p031785 Quercus lobata HOM05D002293 ORTHO05D005475 7.3e-93 344.4 240 72.9
CSS0016943 Camellia sinensis var. sinensis HOM05D002293 ORTHO05D005475 2.8e-92 342.4 242 71.9
CiPaw.03G133000 Carya illinoinensis HOM05D002293 ORTHO05D005475 6.2e-92 341.3 241 73.4
Manes.12G143700 Manihot esculenta HOM05D002293 ORTHO05D005475 6.2e-92 341.3 241 73.4
RcHm_v2.0_Chr2g0117231 Rosa chinensis HOM05D002293 ORTHO05D005475 6.2e-92 341.3 241 73.9
Sc03g0004490 Simmondsia chinensis HOM05D002293 ORTHO05D005475 1.1e-91 340.5 241 73.0
Nn3g18603 Nelumbo nucifera HOM05D002293 ORTHO05D005475 3.1e-91 339.0 241 72.2
Hma1.2p1_2282F.1_g318820 Hydrangea macrophylla HOM05D002293 ORTHO05D005475 1.2e-90 337.0 242 73.6
PGR102G1541 Punica granatum HOM05D002293 ORTHO05D005475 2.0e-90 336.3 241 72.2
Dinv42674 Davidia involucrata HOM05D002293 ORTHO05D005475 3.4e-90 335.5 241 71.4
vmacro08972 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 3.4e-90 335.5 241 71.8
Dinv41022 Davidia involucrata HOM05D002293 ORTHO05D005475 4.4e-90 335.1 242 72.3
Actinidia12214 Actinidia chinensis HOM05D002293 ORTHO05D005475 5.8e-90 334.7 241 71.8
Aqoxy6G00441 Aquilegia oxysepala HOM05D002293 ORTHO05D005475 7.5e-90 334.3 242 71.5
Eucgr.H04880 Eucalyptus grandis HOM05D002293 ORTHO05D005475 7.5e-90 334.3 241 71.4
Cfa002767 Carpinus fangiana HOM05D002293 ORTHO05D005475 1.3e-89 333.6 241 71.0
Haze_25060 Corylus avellana HOM05D002293 ORTHO05D005475 1.3e-89 333.6 241 71.0
TWI75G0492 Tripterygium wilfordii HOM05D002293 ORTHO05D005475 1.3e-89 333.6 241 71.4
Atru.chr4.451 Acer truncatum HOM05D002293 ORTHO05D005475 2.2e-89 332.8 241 72.6
Cpa.g.sc72.4 Carica papaya HOM05D002293 ORTHO05D005475 2.2e-89 332.8 241 71.4
Sed0002744 Sechium edule HOM05D002293 ORTHO05D005475 1.4e-88 330.1 241 69.3
Ciclev10026373m.g Citrus clementina HOM05D002293 ORTHO05D005475 1.9e-88 329.7 241 71.8
TWI31G0415 Tripterygium wilfordii HOM05D002293 ORTHO05D005475 4.1e-88 328.6 241 70.1
CsaV3_6G042260 Cucumis sativus L. HOM05D002293 ORTHO05D005475 5.4e-88 328.2 241 68.9
Gohir.A11G054000 Gossypium hirsutum HOM05D002293 ORTHO05D005475 5.4e-88 328.2 241 70.1
Glyma.05G184800 Glycine max HOM05D002293 ORTHO05D005475 7.1e-88 327.8 242 70.2
PSO541G6166 Papaver somniferum HOM05D002293 ORTHO05D005475 7.1e-88 327.8 242 71.1
Potri.007G079500 Populus trichocarpa HOM05D002293 ORTHO05D005475 7.1e-88 327.8 241 70.5
Hma1.2p1_0358F.1_g134890 Hydrangea macrophylla HOM05D002293 ORTHO05D005475 9.2e-88 327.4 242 70.2
PSO675G2787 Papaver somniferum HOM05D002293 ORTHO05D005475 1.6e-87 326.6 242 70.2
Actinidia05381 Actinidia chinensis HOM05D002293 ORTHO05D005475 2.1e-87 326.2 242 69.0
ClCG01G015980 Citrullus lanatus HOM05D002293 ORTHO05D005475 2.7e-87 325.9 235 70.2
Duzib264G1168 Durio zibethinus HOM05D002293 ORTHO05D005475 3.5e-87 325.5 241 69.3
Gohir.D11G057500 Gossypium hirsutum HOM05D002293 ORTHO05D005475 6.0e-87 324.7 241 69.3
CANSAT01G0963 Cannabis sativa HOM05D002293 ORTHO05D005475 1.0e-86 323.9 242 69.0
Nn5g28871 Nelumbo nucifera HOM05D002293 ORTHO05D005475 1.0e-86 323.9 244 70.5
Glyma.08G142800 Glycine max HOM05D002293 ORTHO05D005475 2.3e-86 322.8 242 68.2
SalBow6G4022 Salvia bowleyana HOM05D002293 ORTHO05D005475 3.0e-86 322.4 245 69.8
Thecc.01G115200 Theobroma cacao HOM05D002293 ORTHO05D005475 3.0e-86 322.4 241 68.5
Rhsim08G0005300 Rhododendron simsii HOM05D002293 ORTHO05D005475 6.6e-86 321.2 282 62.8
MSTRG.24489 Avicennia marina HOM05D002293 ORTHO05D005475 1.1e-85 320.5 244 67.6
Gorai.007G062700 Gossypium raimondii HOM05D002293 ORTHO05D005475 1.5e-85 320.1 241 68.9
Migut.N02943 Erythranthe guttata HOM05D002293 ORTHO05D005475 2.5e-85 319.3 244 68.0
FvH4_1g22890 Fragaria vesca HOM05D002293 ORTHO05D005475 2.5e-85 319.3 241 69.3
Oeu046075.1 Olea europaea HOM05D002293 ORTHO05D005475 4.3e-85 318.5 244 68.0
Gohir.A11G196900 Gossypium hirsutum HOM05D002293 ORTHO05D005475 5.6e-85 318.2 242 69.4
Lj4g0016673 Lotus japonicus HOM05D002293 ORTHO05D005475 7.3e-85 317.8 242 68.6
Gohir.D11G228400 Gossypium hirsutum HOM05D002293 ORTHO05D005475 4.7e-84 315.1 242 67.8
EL10Ac6g14774 Beta vulgaris HOM05D002293 ORTHO05D005475 6.2e-84 314.7 241 68.0
ATR0736G207 Amborella trichopoda HOM05D002293 ORTHO05D005475 8.1e-84 314.3 242 67.4
ECA247G2680 Erigeron canadensis HOM05D002293 ORTHO05D005475 8.1e-84 314.3 238 69.3
Lsat_1_v5_gn_9_42461 Lactuca sativa HOM05D002293 ORTHO05D005475 8.1e-84 314.3 237 70.0
Medtr8g092040 Medicago truncatula HOM05D002293 ORTHO05D005475 8.1e-84 314.3 245 67.8
arahy.Tifrunner.gnm1.ann1.GC7XSK Arachis hypogaea HOM05D002293 ORTHO05D005475 2.3e-83 312.8 242 68.6
Sabra07G0066700 Salix brachista HOM05D002293 ORTHO05D005475 2.3e-83 312.8 270 63.3
HanXRQChr04g0115601 Helianthus annuus HOM05D002293 ORTHO05D005475 3.1e-83 312.4 239 69.5
Phvul.002G265700 Phaseolus vulgaris HOM05D002293 ORTHO05D005475 3.1e-83 312.4 242 64.9
HanXRQChr02g0042411 Helianthus annuus HOM05D002293 ORTHO05D005475 8.9e-83 310.8 239 69.5
Ca_17689_v3 Cicer arietinum L. HOM05D002293 ORTHO05D005475 1.5e-82 310.1 242 67.8
Lalb_Chr07g0184761 Lupinus albus HOM05D002293 ORTHO05D005475 1.5e-82 310.1 241 65.1
Nn2g12418 Nelumbo nucifera HOM05D002293 ORTHO05D005475 2.0e-82 309.7 241 69.3
Potri.005G085500 Populus trichocarpa HOM05D002293 ORTHO05D005475 2.0e-82 309.7 241 67.2
PGSC0003DMG400025052 Solanum tuberosum HOM05D002293 ORTHO05D005475 2.0e-82 309.7 243 66.3
VMungo0251G0649 Vigna mungo HOM05D002293 ORTHO05D005475 2.6e-82 309.3 242 64.9
Hund19634 Selenicereus undatus HOM05D002293 ORTHO05D005475 7.6e-82 307.8 243 66.7
unitig_8.g4827 Utricularia gibba HOM05D002293 ORTHO05D005475 7.6e-82 307.8 243 67.1
AUR62003295 Chenopodium quinoa HOM05D002293 ORTHO05D005475 9.9e-82 307.4 243 67.5
HPP92_010855 Vanilla planifolia HOM05D002293 ORTHO05D005475 9.9e-82 307.4 244 66.4
Dinv19470 Davidia involucrata HOM05D002293 ORTHO05D005475 1.3e-81 307.0 220 70.9
Sopen04g028170 Solanum pennellii HOM05D002293 ORTHO05D005475 2.2e-81 306.2 243 65.4
Solyc04g072047.1 Solanum lycopersicum HOM05D002293 ORTHO05D005475 2.9e-81 305.8 243 65.0
Nitab4.5_0004252g0010 Nicotiana tabacum HOM05D002293 ORTHO05D005475 4.1e-80 302.0 258 63.6
TPR.G20796 Trifolium pratense HOM05D002293 ORTHO05D005475 2.7e-79 299.3 246 66.3
SGA_v2.0_scaffold54G19692 Striga asiatica HOM05D002293 ORTHO05D005475 3.5e-79 298.9 243 64.6
Lalb_Chr12g0203481 Lupinus albus HOM05D002293 ORTHO05D005475 4.6e-79 298.5 226 67.3
Nitab4.5_0001000g0170 Nicotiana tabacum HOM05D002293 ORTHO05D005475 2.3e-78 296.2 258 62.8
CAN.G1252.8 Capsicum annuum HOM05D002293 ORTHO05D005475 6.6e-78 294.7 224 67.0
Lsat_1_v5_gn_1_5861 Lactuca sativa HOM05D002293 ORTHO05D005475 1.1e-77 293.9 281 59.4
AUR62027167 Chenopodium quinoa HOM05D002293 ORTHO05D005475 4.3e-77 292.0 246 63.4
Ah.03g141640 Amaranthus hybridus HOM05D002293 ORTHO05D005475 1.2e-76 290.4 223 67.7
Sabra05G0070400 Salix brachista HOM05D002293 ORTHO05D005475 2.8e-76 289.3 290 56.2
Zm00001eb231220 Zea mays HOM05D002293 ORTHO05D005475 6.2e-76 288.1 244 62.3
Gorai.007G246300 Gossypium raimondii HOM05D002293 ORTHO05D005475 1.1e-75 287.3 221 67.4
Zm00001eb209000 Zea mays HOM05D002293 ORTHO05D005475 1.8e-75 286.6 244 61.5
Duzib147G0641 Durio zibethinus HOM05D002293 ORTHO05D005475 2.4e-75 286.2 222 67.6
TAR376G0974 Trochodendron aralioides HOM05D002293 ORTHO05D005475 2.4e-75 286.2 197 74.6
Sc16g0004130 Simmondsia chinensis HOM05D002293 ORTHO05D005475 1.5e-74 283.5 196 73.5
SGA_v2.0_scaffold364G49965 Striga asiatica HOM05D002293 ORTHO05D005475 1.5e-74 283.5 202 69.3
Lj2A567T21 Lonicera japonica HOM05D002293 ORTHO05D005475 2.6e-74 282.7 196 73.5
Lj7A386T88 Lonicera japonica HOM05D002293 ORTHO05D005475 2.6e-74 282.7 196 74.5
DCAR_019970 Daucus carota HOM05D002293 ORTHO05D005475 1.3e-73 280.4 234 62.4
MELO3C007468.2 Cucumis melo HOM05D002293 ORTHO05D005475 8.4e-73 277.7 196 70.4
Ah.02g125930 Amaranthus hybridus HOM05D002293 ORTHO05D005475 1.1e-72 277.3 196 71.4
arahy.Tifrunner.gnm1.ann1.LE5EW2 Arachis hypogaea HOM05D002293 ORTHO05D005475 1.1e-72 277.3 197 72.6
FAN26G3412 Fragaria x ananassa HOM05D002293 ORTHO05D005475 1.2e-71 273.9 199 70.9
FAN28G2749 Fragaria x ananassa HOM05D002293 ORTHO05D005475 2.1e-71 273.1 199 71.4
FAN19G1282 Fragaria x ananassa HOM05D002293 ORTHO05D005475 2.7e-71 272.7 204 69.6
FAN23G0553 Fragaria x ananassa HOM05D002293 ORTHO05D005475 2.7e-71 272.7 199 70.9
Duzib187G0135 Durio zibethinus HOM05D002293 ORTHO05D005475 1.3e-70 270.4 196 70.9
Oeu061454.1 Olea europaea HOM05D002293 ORTHO05D005475 3.9e-70 268.9 279 54.5
Hund03526 Selenicereus undatus HOM05D002293 ORTHO05D005475 1.3e-65 253.8 220 61.4
TAR381G0840 Trochodendron aralioides HOM05D002293 ORTHO05D005475 6.4e-65 251.5 179 69.8
Psat0s281g0080 Pisum sativum HOM05D002293 ORTHO05D005475 1.1e-64 250.8 242 57.0
Glyma.14G174100 Glycine max HOM05D002293 ORTHO05D005475 9.3e-64 247.7 175 72.0
COL.COLO4_10988 Corchorus olitorius HOM05D002293 ORTHO05D005475 1.1e-61 240.7 188 65.4
TAR625G1205 Trochodendron aralioides HOM05D002293 ORTHO05D005475 3.9e-54 215.7 196 61.2
Peaxi162Scf17813g00005 Petunia axillaris HOM05D002293 ORTHO05D005475 3.7e-52 209.1 155 70.3
CDE04G0337 Ceratophyllum demersum HOM05D002293 ORTHO05D005475 6.2e-52 208.4 210 53.8
Haze_25047 Corylus avellana HOM05D002293 ORTHO05D005475 1.9e-48 196.8 135 71.9
Zm00001eb114730 Zea mays HOM05D002293 ORTHO05D005475 5.1e-46 188.7 155 63.9
Lalb_Chr13g0296261 Lupinus albus HOM05D002293 ORTHO05D005475 3.0e-38 162.9 112 75.9
Lalb_Chr13g0296251 Lupinus albus HOM05D002293 ORTHO05D005475 1.1e-37 161.0 130 59.2
Rhsim10G0148500 Rhododendron simsii HOM05D002293 ORTHO05D005475 5.3e-35 152.1 149 57.0
vmacro12893 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 4.5e-34 149.1 169 49.1
HPP92_010897 Vanilla planifolia HOM05D002293 ORTHO05D005475 1.4e-30 137.5 223 43.5
Mapoly0014s0184 Marchantia polymorpha HOM05D002293 ORTHO05D005475 3.0e-30 136.3 198 40.4
AagrBONN_evm.TU.Sc2ySwM_117.3341 Anthoceros agrestis HOM05D002293 ORTHO05D005475 1.5e-26 124.0 241 33.2
Peaxi162Scf00226g00011 Petunia axillaris HOM05D002293 ORTHO05D005475 4.5e-26 122.5 99 61.6
Pp3c9_7910 Physcomitrium patens HOM05D002293 ORTHO05D005475 5.9e-26 122.1 217 35.9
Nn8g40924 Nelumbo nucifera HOM05D002293 ORTHO05D005475 1.7e-25 120.6 232 39.2
CBR_g39756 Chara braunii HOM05D002293 ORTHO05D005475 5.5e-24 115.5 207 36.7
CBR_g72646 Chara braunii HOM05D002293 ORTHO05D005475 9.4e-24 114.8 193 36.8
vmacro18642 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 9.7e-21 104.8 236 33.9
ATR0736G144 Amborella trichopoda HOM05D006066 ORTHO05D007720 3.1e-19 99.8 104 48.1
unitig_744.g24089 Utricularia gibba HOM05D002293 ORTHO05D005475 1.5e-16 90.9 84 61.9
Nn2g12848 Nelumbo nucifera HOM05D002293 ORTHO05D005475 2.0e-13 80.5 178 37.1
Gohir.D08G112008 Gossypium hirsutum HOM05D001556 ORTHO05D005475 1.7e-12 77.4 59 59.3
BcaC08g42952 Brassica carinata HOM05D004411 ORTHO05D032662 7.7e-10 68.6 50 78.0
BcaC09g49352 Brassica carinata HOM05D000853 ORTHO05D000723 1.0e-09 68.2 40 92.5
SEGI_39212 Sequoiadendron giganteum HOM05D002293 ORTHO05D005475 1.0e-09 68.2 64 59.4
C06p01940 Brassica napus HOM05D004411 ORTHO05D032662 1.5e-08 64.3 98 48.0


User provided reference genes

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