Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G21655 Arabidopsis thaliana HOM05D007888 ORTHO05D009976 2.1e-85 318.9 157 100.0
AT3G29797 Arabidopsis thaliana HOM05D007888 ORTHO05D009976 2.3e-71 272.3 157 84.1
AT3G30247 Arabidopsis thaliana HOM05D007888 ORTHO05D009976 4.8e-69 264.6 159 81.8
AL4G10980 Arabidopsis lyrata HOM05D007888 ORTHO05D009976 1.1e-65 253.4 155 78.1
AL4G10990 Arabidopsis lyrata HOM05D007888 ORTHO05D009976 9.7e-62 240.4 157 75.2
AT2G21727 Arabidopsis thaliana HOM05D007888 ORTHO05D009976 1.1e-52 210.3 150 69.3
Sp4g04720 Schrenkiella parvula HOM05D007888 ORTHO05D009976 4.6e-48 194.9 159 64.8
Thhalv10000516m.g Eutrema salsugineum HOM05D007888 ORTHO05D009976 2.6e-46 189.1 153 63.4
Sp4g04740 Schrenkiella parvula HOM05D007888 ORTHO05D009976 4.1e-44 181.8 158 59.5
CARHR112800 Cardamine hirsuta HOM05D007888 ORTHO05D009976 1.0e-34 150.6 149 49.7
AL4G16900 Arabidopsis lyrata HOM05D007888 ORTHO05D009976 3.2e-33 145.6 158 49.4
Sp2g20590 Schrenkiella parvula HOM05D007888 ORTHO05D009976 1.0e-31 140.6 149 46.3
C01p52810 Brassica napus HOM05D007888 ORTHO05D009976 4.0e-31 138.7 154 47.4
C01p52860 Brassica napus HOM05D007888 ORTHO05D009976 6.7e-31 137.9 154 46.8
C01p52850 Brassica napus HOM05D007888 ORTHO05D009976 2.6e-30 136.0 154 46.8
C01p52830 Brassica napus HOM05D007888 ORTHO05D009976 3.3e-30 135.6 154 46.8
BolC1t05222H Brassica oleracea HOM05D007888 ORTHO05D009976 7.5e-30 134.4 152 44.7
BcaC09g48217 Brassica carinata HOM05D007888 ORTHO05D009976 9.7e-30 134.0 152 43.4
BolC1t05261H Brassica oleracea HOM05D007888 ORTHO05D009976 9.7e-30 134.0 152 43.4
BcaB04g21393 Brassica carinata HOM05D007888 ORTHO05D009976 1.7e-29 133.3 150 42.7
C01p52840 Brassica napus HOM05D007888 ORTHO05D009976 2.2e-29 132.9 154 45.5
BolC1t05223H Brassica oleracea HOM05D007888 ORTHO05D009976 2.2e-29 132.9 154 46.1
Sp4g04710 Schrenkiella parvula HOM05D007888 ORTHO05D009976 2.2e-29 132.9 123 56.9
BolC1t05220H Brassica oleracea HOM05D007888 ORTHO05D009976 2.8e-29 132.5 154 46.1
BcaC09g48239 Brassica carinata HOM05D007888 ORTHO05D009976 4.8e-29 131.7 154 45.5
BolC1t05221H Brassica oleracea HOM05D007888 ORTHO05D009976 6.3e-29 131.3 154 44.8
BcaB04g21088 Brassica carinata HOM05D007888 ORTHO05D009976 8.2e-29 131.0 149 43.6
C01p52800 Brassica napus HOM05D007888 ORTHO05D009976 8.2e-29 131.0 154 44.8
BolC1t05218H Brassica oleracea HOM05D007888 ORTHO05D009976 8.2e-29 131.0 154 44.8
C01p52820 Brassica napus HOM05D007888 ORTHO05D009976 1.8e-28 129.8 154 45.5
BolC1t05219H Brassica oleracea HOM05D007888 ORTHO05D009976 1.8e-28 129.8 154 45.5
AT2G25482 Arabidopsis thaliana HOM05D007888 ORTHO05D009976 2.4e-28 129.4 158 42.4
Carub.0004s0516 Capsella rubella HOM05D007888 ORTHO05D009976 7.0e-28 127.9 158 43.0
BcaC01g00727 Brassica carinata HOM05D007888 ORTHO05D009976 9.1e-28 127.5 150 41.3
BcaC07g40200 Brassica carinata HOM05D007888 ORTHO05D009976 9.1e-28 127.5 149 43.6
BolC1t05230H Brassica oleracea HOM05D007888 ORTHO05D009976 1.2e-27 127.1 149 42.3
C01p53020 Brassica napus HOM05D007888 ORTHO05D009976 2.0e-27 126.3 149 40.3
BolC1t05244H Brassica oleracea HOM05D007888 ORTHO05D009976 2.0e-27 126.3 150 42.7
BcaC09g48240 Brassica carinata HOM05D007888 ORTHO05D009976 2.7e-27 125.9 154 44.8
BcaC09g48231 Brassica carinata HOM05D007888 ORTHO05D009976 5.9e-27 124.8 153 41.8
C01p53000 Brassica napus HOM05D007888 ORTHO05D009976 5.9e-27 124.8 150 42.7
BcaC09g48237 Brassica carinata HOM05D007888 ORTHO05D009976 7.7e-27 124.4 154 43.5
C01p52960 Brassica napus HOM05D007888 ORTHO05D009976 1.3e-26 123.6 148 42.6
BolC1t05234H Brassica oleracea HOM05D007888 ORTHO05D009976 1.3e-26 123.6 148 42.6
Thhalv10005636m.g Eutrema salsugineum HOM05D007888 ORTHO05D009976 1.3e-26 123.6 157 42.0
C01p52940 Brassica napus HOM05D007888 ORTHO05D009976 1.7e-26 123.2 148 42.6
C01p52980 Brassica napus HOM05D007888 ORTHO05D009976 1.7e-26 123.2 154 43.5
BolC1t05238H Brassica oleracea HOM05D007888 ORTHO05D009976 2.9e-26 122.5 154 43.5
BolC1t05232H Brassica oleracea HOM05D007888 ORTHO05D009976 3.8e-26 122.1 148 41.9
BolC1t05233H Brassica oleracea HOM05D007888 ORTHO05D009976 3.8e-26 122.1 148 41.9
BolC1t05235H Brassica oleracea HOM05D007888 ORTHO05D009976 3.8e-26 122.1 148 41.9
Carub.0004s0517 Capsella rubella HOM05D007888 ORTHO05D009976 3.8e-26 122.1 158 41.1
BolC1t05237H Brassica oleracea HOM05D007888 ORTHO05D009976 1.9e-25 119.8 148 41.9
BolC1t05231H Brassica oleracea HOM05D007888 ORTHO05D009976 2.5e-25 119.4 148 41.2
Carub.0004s0518 Capsella rubella HOM05D007888 ORTHO05D009976 1.2e-24 117.1 119 46.2
BolC1t05236H Brassica oleracea HOM05D007888 ORTHO05D009976 6.1e-24 114.8 148 40.5
C01p53150 Brassica napus HOM05D007888 ORTHO05D009976 8.0e-24 114.4 134 43.3
Carub.0006s2294 Capsella rubella HOM05D007888 ORTHO05D009976 1.0e-23 114.0 155 41.3
AL3G11060 Arabidopsis lyrata HOM05D007888 ORTHO05D009976 1.8e-23 113.2 147 40.1
BcaC09g48238 Brassica carinata HOM05D007888 ORTHO05D009976 1.2e-22 110.5 146 42.5
BcaB03g11708 Brassica carinata HOM05D007888 ORTHO05D009976 2.0e-22 109.8 148 37.2
C01p52790 Brassica napus HOM05D007888 ORTHO05D009976 2.6e-22 109.4 146 43.2
BolC1t05217H Brassica oleracea HOM05D007888 ORTHO05D009976 3.4e-22 109.0 146 43.2
BcaB07g29934 Brassica carinata HOM05D007888 ORTHO05D009976 9.8e-22 107.5 161 39.8
AT3G01185 Arabidopsis thaliana HOM05D007888 ORTHO05D009976 1.7e-21 106.7 148 37.2
Carub.0003s0096 Capsella rubella HOM05D007888 ORTHO05D009976 8.3e-21 104.4 152 35.5
Thhalv10005295m.g Eutrema salsugineum HOM05D007888 ORTHO05D009976 4.1e-20 102.1 145 38.6
Sp4g04700 Schrenkiella parvula HOM05D007888 ORTHO05D009976 4.1e-20 102.1 116 50.9
CARHR112790 Cardamine hirsuta HOM05D007888 ORTHO05D009976 3.6e-16 89.0 74 54.1
C01p53160 Brassica napus HOM05D007888 ORTHO05D009976 6.1e-16 88.2 67 53.7
C01p52970 Brassica napus HOM05D007888 ORTHO05D009976 1.4e-15 87.0 80 50.0
A06p13980 Brassica napus HOM05D007888 ORTHO05D009976 1.8e-15 86.7 111 40.5
THA.LOC104799715 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 1.5e-14 83.6 151 32.5
THA.LOC104813239 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 2.0e-14 83.2 150 28.0
THA.LOC104817628 Tarenaya hassleriana HOM05D007923 ORTHO05D009976 4.4e-14 82.0 150 26.0
AL1G53940 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 1.8e-12 76.6 147 29.9
THA.LOC104810160 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 7.8e-11 71.2 138 26.8
AT1G45190 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 1.3e-10 70.5 112 33.9
Thhalv10022160m.g Eutrema salsugineum HOM05D007923 ORTHO05D009651 1.3e-10 70.5 163 27.6
AL3G23600 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 1.7e-10 70.1 156 30.1
AT1G47470 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 1.7e-10 70.1 163 29.4
CARHR086550 Cardamine hirsuta HOM05D007923 ORTHO05D009651 5.0e-10 68.6 164 25.6
AT3G11990 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 8.6e-10 67.8 162 26.5
Carub.0008s0480 Capsella rubella HOM05D007923 ORTHO05D009651 8.6e-10 67.8 164 27.4
AT1G52970 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 1.1e-09 67.4 137 27.0
AL9U10560 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 9.5e-09 64.3 147 28.6
C01p52920 Brassica napus HOM05D007888 ORTHO05D009976 3.6e-08 62.4 48 56.2
C01p52930 Brassica napus HOM05D007888 ORTHO05D009976 3.6e-08 62.4 48 56.2
C01p52950 Brassica napus HOM05D007888 ORTHO05D009976 3.6e-08 62.4 48 56.2
AL5G13880 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 6.1e-08 61.6 150 23.3
AL5G13890 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 6.1e-08 61.6 150 23.3
AL1G61300 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 8.0e-08 61.2 101 29.7
CARHR103140 Cardamine hirsuta HOM05D007923 ORTHO05D009651 8.0e-08 61.2 96 30.2
Thecc.05G151700 Theobroma cacao HOM05D001614 ORTHO05D000988 1.8e-07 60.1 109 28.4
Carub.0001s4211 Capsella rubella HOM05D007923 ORTHO05D009651 3.0e-07 59.3 113 30.1
AT4G13261 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 4.0e-07 58.9 147 28.6
AT4G13263 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 4.0e-07 58.9 147 27.9
CARHR043170 Cardamine hirsuta HOM05D007923 ORTHO05D009651 4.0e-07 58.9 136 25.0
THA.LOC104824530 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 4.0e-07 58.9 157 22.9
AT2G04031 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 5.2e-07 58.5 84 28.6
CARHR179580 Cardamine hirsuta HOM05D007923 ORTHO05D009651 5.2e-07 58.5 89 29.2
AL5G13870 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 8.9e-07 57.8 150 23.3
AL5G13900 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 8.9e-07 57.8 106 27.4
AL5G13910 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 8.9e-07 57.8 106 27.4
AT2G04037 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 8.9e-07 57.8 142 24.6
BcaC09g48206 Brassica carinata HOM05D007923 ORTHO05D009651 1.2e-06 57.4 166 22.3
Sp1g39520 Schrenkiella parvula HOM05D007923 ORTHO05D009651 1.5e-06 57.0 91 28.6
AT5G35405 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 2.0e-06 56.6 147 27.9
Thhalv10012072m.g Eutrema salsugineum HOM05D007923 ORTHO05D009651 2.0e-06 56.6 96 29.2
BcaB04g20407 Brassica carinata HOM05D007923 ORTHO05D009651 2.6e-06 56.2 108 26.9
BraA01t04147Z Brassica rapa HOM05D007923 ORTHO05D009651 5.8e-06 55.1 161 23.0
Cpa.g.c39057 Carica papaya HOM05D014073 ORTHO05D014166 5.8e-06 55.1 90 32.2
BolC1t05274H Brassica oleracea HOM05D007923 ORTHO05D009651 7.5e-06 54.7 161 22.4
Sp3g10220 Schrenkiella parvula HOM05D007923 ORTHO05D009651 7.5e-06 54.7 171 21.1


User provided reference genes

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