Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G21385 Arabidopsis thaliana HOM05D005703 ORTHO05D006643 1.3e-180 636.3 331 100.0
AL4G10560 Arabidopsis lyrata HOM05D005703 ORTHO05D006643 8.8e-174 613.6 331 95.5
Carub.0004s0043 Capsella rubella HOM05D005703 ORTHO05D006643 5.9e-170 600.9 331 93.1
CARHR112270 Cardamine hirsuta HOM05D005703 ORTHO05D006643 3.5e-162 575.1 331 89.4
Sp4g00560 Schrenkiella parvula HOM05D005703 ORTHO05D006643 4.3e-160 568.2 331 87.3
C08p41580 Brassica napus HOM05D005703 ORTHO05D006643 1.1e-152 543.5 333 83.8
A09p58290 Brassica napus HOM05D005703 ORTHO05D006643 4.3e-152 541.6 334 83.8
BraA09t41216Z Brassica rapa HOM05D005703 ORTHO05D006643 7.3e-152 540.8 335 83.6
BolC8t51720H Brassica oleracea HOM05D005703 ORTHO05D006643 2.1e-151 539.3 334 82.9
Aa31LG7G15130 Aethionema arabicum HOM05D005703 ORTHO05D001153 7.5e-149 530.8 331 80.7
THA.LOC104824803 Tarenaya hassleriana HOM05D005703 ORTHO05D006643 3.6e-135 485.3 330 75.5
Cpa.g.sc150.43 Carica papaya HOM05D005703 ORTHO05D006643 1.5e-125 453.4 333 69.1
Thhalv10000241m.g Eutrema salsugineum HOM05D005703 ORTHO05D006643 1.4e-123 446.8 251 88.4
Atru.chr5.3109 Acer truncatum HOM05D005703 ORTHO05D006643 2.7e-122 442.6 295 73.6
Potri.004G160800 Populus trichocarpa HOM05D005703 ORTHO05D006643 3.5e-122 442.2 277 77.3
QL11p045612 Quercus lobata HOM05D005703 ORTHO05D006643 2.5e-120 436.0 330 68.5
Eucgr.D00178 Eucalyptus grandis HOM05D005703 ORTHO05D006643 3.3e-120 435.6 277 76.5
Manes.11G087800 Manihot esculenta HOM05D005703 ORTHO05D006643 3.3e-120 435.6 300 71.7
Thecc.02G078100 Theobroma cacao HOM05D005703 ORTHO05D006643 3.6e-119 432.2 277 75.1
TWI31G0330 Tripterygium wilfordii HOM05D005703 ORTHO05D006643 3.6e-119 432.2 307 69.7
Hma1.2p1_0066F.1_g035910 Hydrangea macrophylla HOM05D005703 ORTHO05D006643 1.8e-118 429.9 276 76.1
GSVIVG01024205001 Vitis vinifera HOM05D005703 ORTHO05D006643 1.8e-118 429.9 292 72.6
Sopen01g052320 Solanum pennellii HOM05D005703 ORTHO05D006643 5.3e-118 428.3 302 70.9
FvH4_2g10050 Fragaria vesca HOM05D005703 ORTHO05D006643 6.9e-118 427.9 297 69.7
Solyc01g110160.4 Solanum lycopersicum HOM05D005703 ORTHO05D006643 6.9e-118 427.9 302 70.5
Lj3g0017018 Lotus japonicus HOM05D005703 ORTHO05D006643 2.0e-117 426.4 288 71.5
Actinidia27862 Actinidia chinensis HOM05D005703 ORTHO05D006643 3.4e-117 425.6 291 71.8
MELO3C002791.2 Cucumis melo HOM05D005703 ORTHO05D006643 3.4e-117 425.6 291 72.9
RcHm_v2.0_Chr6g0266981 Rosa chinensis HOM05D005703 ORTHO05D006643 4.5e-117 425.2 295 70.5
CSS0001334 Camellia sinensis var. sinensis HOM05D005703 ORTHO05D006643 5.8e-117 424.9 296 69.9
Lalb_Chr03g0025421 Lupinus albus HOM05D005703 ORTHO05D006643 5.8e-117 424.9 284 72.9
CsaV3_7G000370 Cucumis sativus L. HOM05D005703 ORTHO05D006643 7.6e-117 424.5 291 72.5
Sabra04G0107600 Salix brachista HOM05D005703 ORTHO05D006643 7.6e-117 424.5 276 75.0
MD10G1066100 Malus domestica HOM05D005703 ORTHO05D006643 2.9e-116 422.5 297 69.4
Actinidia02238 Actinidia chinensis HOM05D005703 ORTHO05D006643 6.4e-116 421.4 300 69.0
CiPaw.06G130900 Carya illinoinensis HOM05D005703 ORTHO05D006643 6.4e-116 421.4 300 68.7
Gohir.D12G030600 Gossypium hirsutum HOM05D005703 ORTHO05D006643 1.9e-115 419.9 277 72.9
Glyma.11G112900 Glycine max HOM05D005703 ORTHO05D006643 2.4e-115 419.5 277 72.6
Gorai.008G031500 Gossypium raimondii HOM05D005703 ORTHO05D006643 7.1e-115 417.9 277 72.2
PGSC0003DMG400030971 Solanum tuberosum HOM05D005703 ORTHO05D006643 7.1e-115 417.9 332 65.1
Aqoxy5G01507 Aquilegia oxysepala HOM05D005703 ORTHO05D006643 1.2e-114 417.2 278 72.3
VMungo1127G0812 Vigna mungo HOM05D005703 ORTHO05D006643 6.0e-114 414.8 278 72.3
Glyma.12G038800 Glycine max HOM05D005703 ORTHO05D006643 7.9e-114 414.5 277 72.6
COL.COLO4_26014 Corchorus olitorius HOM05D005703 ORTHO05D006643 1.0e-113 414.1 277 72.9
Peaxi162Scf00016g00231 Petunia axillaris HOM05D005703 ORTHO05D006643 3.0e-113 412.5 292 70.5
arahy.Tifrunner.gnm1.ann1.YBLQ63 Arachis hypogaea HOM05D005703 ORTHO05D006643 6.7e-113 411.4 295 69.8
Ciclev10028680m.g Citrus clementina HOM05D005703 ORTHO05D006643 8.7e-113 411.0 327 64.5
Medtr4g071190 Medicago truncatula HOM05D005703 ORTHO05D006643 1.1e-112 410.6 291 70.1
Rhsim05G0069500 Rhododendron simsii HOM05D005703 ORTHO05D006643 1.1e-112 410.6 308 65.9
TPR.G16235 Trifolium pratense HOM05D005703 ORTHO05D006643 1.5e-112 410.2 287 70.7
Ca_20918_v3 Cicer arietinum L. HOM05D005703 ORTHO05D006643 5.6e-112 408.3 291 70.4
Nn6g32200 Nelumbo nucifera HOM05D005703 ORTHO05D006643 9.6e-112 407.5 277 71.1
PSO170G4951 Papaver somniferum HOM05D005703 ORTHO05D006643 1.6e-111 406.8 279 70.6
MSTRG.20056 Avicennia marina HOM05D005703 ORTHO05D006643 4.0e-110 402.1 288 68.1
Psat7g139960 Pisum sativum HOM05D005703 ORTHO05D006643 9.0e-110 401.0 290 69.3
FAN15G0097 Fragaria x ananassa HOM05D005703 ORTHO05D006643 2.0e-109 399.8 350 59.4
Sc14g0002020 Simmondsia chinensis HOM05D005703 ORTHO05D006643 2.6e-109 399.4 284 68.0
ECA234G1754 Erigeron canadensis HOM05D005703 ORTHO05D006643 3.4e-109 399.1 270 72.2
Migut.B00193 Erythranthe guttata HOM05D005703 ORTHO05D006643 1.7e-108 396.7 275 70.9
HanXRQChr12g0373591 Helianthus annuus HOM05D005703 ORTHO05D006643 1.7e-108 396.7 277 70.0
Prupe.8G088000 Prunus persica HOM05D005703 ORTHO05D006643 1.7e-108 396.7 285 69.8
ATR0661G148 Amborella trichopoda HOM05D005703 ORTHO05D006643 3.2e-107 392.5 281 69.0
HPP92_025877 Vanilla planifolia HOM05D005703 ORTHO05D006643 5.5e-107 391.7 303 65.3
Os09g0531100 Oryza sativa ssp. japonica HOM05D005703 ORTHO05D006643 9.3e-107 391.0 277 69.0
Lsat_1_v5_gn_5_125081 Lactuca sativa HOM05D005703 ORTHO05D006643 4.6e-106 388.7 336 61.9
CDE09G1081 Ceratophyllum demersum HOM05D005703 ORTHO05D006643 1.5e-104 383.6 320 60.9
AUR62010417 Chenopodium quinoa HOM05D005703 ORTHO05D006643 5.7e-104 381.7 301 64.8
Zm00001eb353590 Zea mays HOM05D005703 ORTHO05D006643 5.7e-104 381.7 285 66.3
AUR62016798 Chenopodium quinoa HOM05D005703 ORTHO05D006643 2.8e-103 379.4 316 61.7
Phvul.011G040900 Phaseolus vulgaris HOM05D005703 ORTHO05D006643 4.8e-103 378.6 255 71.0
Nitab4.5_0011132g0020 Nicotiana tabacum HOM05D005703 ORTHO05D006643 2.4e-102 376.3 288 66.3
arahy.Tifrunner.gnm1.ann1.R55P3J Arachis hypogaea HOM05D005703 ORTHO05D006643 8.4e-100 367.9 268 69.0
Dinv23475 Davidia involucrata HOM05D005703 ORTHO05D006643 1.9e-99 366.7 277 66.8
Haze_02308 Corylus avellana HOM05D005703 ORTHO05D006643 1.6e-98 363.6 302 63.2
MELO3C013421.2 Cucumis melo HOM05D005703 ORTHO05D006643 1.5e-96 357.1 276 67.4
Hma1.2p1_0066F.1_g035920 Hydrangea macrophylla HOM05D005703 ORTHO05D006643 1.5e-96 357.1 276 66.7
SGA_v2.0_scaffold58G20483 Striga asiatica HOM05D005703 ORTHO05D006643 9.7e-96 354.4 304 61.2
ClCG02G004580 Citrullus lanatus HOM05D005703 ORTHO05D006643 6.9e-94 348.2 291 64.3
SalBow6G5125 Salvia bowleyana HOM05D005703 ORTHO05D006643 2.6e-93 346.3 278 64.4
EL10Ac9g21670 Beta vulgaris HOM05D005703 ORTHO05D006643 2.3e-89 333.2 339 53.1
DCAR_022931 Daucus carota HOM05D005703 ORTHO05D006643 3.9e-89 332.4 276 62.0
vmacro17444 Vaccinium macrocarpon HOM05D005703 ORTHO05D006643 2.5e-88 329.7 296 58.4
Nitab4.5_0002723g0090 Nicotiana tabacum HOM05D005703 ORTHO05D006643 3.7e-87 325.9 276 62.0
BcaB06g27102 Brassica carinata HOM05D005703 ORTHO05D006643 1.8e-86 323.6 261 67.8
FAN24G3327 Fragaria x ananassa HOM05D005703 ORTHO05D006643 6.9e-86 321.6 297 56.2
FAN27G2042 Fragaria x ananassa HOM05D005703 ORTHO05D006643 9.1e-86 321.2 297 55.9
FAN20G2472 Fragaria x ananassa HOM05D005703 ORTHO05D006643 7.7e-85 318.2 297 55.9
Hund00227 Selenicereus undatus HOM05D005703 ORTHO05D006643 6.5e-84 315.1 330 52.7
Sed0007704 Sechium edule HOM05D005703 ORTHO05D006643 4.2e-83 312.4 221 69.7
CANSAT11G2682 Cannabis sativa HOM05D005703 ORTHO05D006643 3.6e-82 309.3 286 58.4
Lj5C191G8 Lonicera japonica HOM05D005703 ORTHO05D006643 1.0e-81 307.8 291 58.1
Thhalv10005656m.g Eutrema salsugineum HOM05D005703 ORTHO05D006643 3.0e-81 306.2 182 84.6
BraA01t01909Z Brassica rapa HOM05D005703 ORTHO05D006643 4.8e-79 298.9 208 76.0
Mapoly0084s0041 Marchantia polymorpha HOM05D005703 ORTHO05D006643 4.8e-79 298.9 278 54.0
Pp3c22_4620 Physcomitrium patens HOM05D005703 ORTHO05D006643 7.0e-78 295.0 282 51.8
SMO356G0671 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 1.2e-77 294.3 273 54.6
Cc02_g17090 Coffea canephora HOM05D005703 ORTHO05D006643 4.5e-77 292.4 198 71.7
Cfa005074 Carpinus fangiana HOM05D005703 ORTHO05D006643 1.0e-76 291.2 219 69.4
SMO290G0004 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 2.9e-76 289.7 275 54.2
SMO290G0013 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 8.5e-76 288.1 275 54.2
SMO356G0278 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 1.1e-70 271.2 275 52.4
unitig_0.g54 Utricularia gibba HOM05D005703 ORTHO05D006643 2.0e-69 266.9 198 65.2
Gohir.A12G041600 Gossypium hirsutum HOM05D005703 ORTHO05D006643 8.3e-63 245.0 163 73.0
Duzib132G0736 Durio zibethinus HOM05D005703 ORTHO05D006643 1.0e-57 228.0 316 44.9
AagrBONN_evm.TU.Sc2ySwM_228.378 Anthoceros agrestis HOM05D005703 ORTHO05D006643 1.8e-57 227.3 199 56.3
BolC1t00937H Brassica oleracea HOM05D005703 ORTHO05D006643 1.2e-53 214.5 147 78.2
C01p09750 Brassica napus HOM05D005703 ORTHO05D006643 5.0e-52 209.1 186 64.0
BolC2t11489H Brassica oleracea HOM05D005703 ORTHO05D006643 2.2e-47 193.7 185 60.0
BolC4t23697H Brassica oleracea HOM05D005703 ORTHO05D006643 5.0e-44 182.6 182 55.5
BcaC04g19425 Brassica carinata HOM05D005703 ORTHO05D006643 8.6e-44 181.8 225 50.7
C04p21760 Brassica napus HOM05D005703 ORTHO05D006643 5.2e-41 172.6 206 50.0
C09p55850 Brassica napus HOM05D005703 ORTHO05D006643 6.8e-41 172.2 208 50.5
MBI01_g29867_MAGBIO Magnolia biondii HOM05D005703 ORTHO05D006643 8.9e-41 171.8 134 66.4
TAR381G0871 Trochodendron aralioides HOM05D005703 ORTHO05D006643 1.5e-40 171.0 113 71.7
C02p54250 Brassica napus HOM05D005703 ORTHO05D006643 1.4e-38 164.5 211 50.7
BcaC01g06448 Brassica carinata HOM05D005703 ORTHO05D006643 1.1e-33 148.3 137 61.3
CBR_g49480 Chara braunii HOM05D005703 ORTHO05D006643 1.7e-31 141.0 240 34.2
Cre08.g372000 Chlamydomonas reinhardtii HOM05D005703 ORTHO05D006643 1.2e-29 134.8 274 31.0
Potri.009G121902 Populus trichocarpa HOM05D005703 ORTHO05D006643 2.5e-27 127.1 106 62.3
PRCOL_00000952 Prasinoderma coloniale HOM05D005703 ORTHO05D006643 1.2e-26 124.8 232 33.2
QL11p045593 Quercus lobata HOM05D005703 ORTHO05D006643 2.3e-25 120.6 71 76.1
C03p15450 Brassica napus HOM05D005703 ORTHO05D006643 7.6e-24 115.5 140 50.7
HanXRQChr14g0433731 Helianthus annuus HOM05D005703 ORTHO05D006643 9.9e-24 115.2 79 74.7
BcaC09g52221 Brassica carinata HOM05D005703 ORTHO05D006643 1.2e-21 108.2 61 85.2
SEGI_33335 Sequoiadendron giganteum HOM05D005703 ORTHO05D006643 6.0e-21 105.9 90 55.6
QL11p045598 Quercus lobata HOM05D005703 ORTHO05D006643 2.3e-20 104.0 69 69.6
unitig_0.g53 Utricularia gibba HOM05D005703 ORTHO05D006643 5.1e-20 102.8 100 52.0
C03p56750 Brassica napus HOM05D005703 ORTHO05D006643 6.6e-20 102.4 130 46.9
BolC1t00936H Brassica oleracea HOM05D005703 ORTHO05D006643 8.6e-20 102.1 61 80.3
Cc02_g17080 Coffea canephora HOM05D005703 ORTHO05D006643 1.9e-19 100.9 70 65.7
C03p56740 Brassica napus HOM05D005703 ORTHO05D006643 2.5e-19 100.5 78 65.4
MBI01_g29866_MAGBIO Magnolia biondii HOM05D005703 ORTHO05D006643 6.9e-17 92.4 61 63.9
Lsat_1_v5_gn_1_61800 Lactuca sativa HOM05D005428 ORTHO05D002547 1.5e-08 64.7 57 56.1
MCO02G267 Micromonas commoda HOM05D005703 ORTHO05D006643 4.5e-08 63.2 141 29.8
Oeu037764.1 Olea europaea HOM05D005703 ORTHO05D006643 6.4e-07 59.3 35 71.4
CAN.G878.5 Capsicum annuum HOM05D000269 ORTHO05D000216 1.1e-06 58.5 39 64.1
TAR381G1022 Trochodendron aralioides HOM05D005703 ORTHO05D006643 1.1e-06 58.5 63 47.6
AUR62033094 Chenopodium quinoa HOM05D005703 ORTHO05D006643 1.4e-06 58.2 49 59.2


User provided reference genes

Program Settings