Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G21140 Arabidopsis thaliana HOM05D003311 ORTHO05D003707 8.4e-145 517.3 322 100.0
AL4G10230 Arabidopsis lyrata HOM05D003311 ORTHO05D003707 6.9e-123 444.5 335 86.3
Carub.0004s0016 Capsella rubella HOM05D003311 ORTHO05D003707 1.5e-106 390.2 324 78.4
CARHR111970 Cardamine hirsuta HOM05D003311 ORTHO05D003707 7.7e-98 361.3 344 70.9
Thhalv10000244m.g Eutrema salsugineum HOM05D003311 ORTHO05D003707 1.5e-77 293.9 346 65.6
Sp4g00290 Schrenkiella parvula HOM05D003311 ORTHO05D003707 4.5e-74 282.3 345 64.1
A04p15910 Brassica napus HOM05D003311 ORTHO05D003707 3.2e-67 259.6 365 60.0
C04p50360 Brassica napus HOM05D003311 ORTHO05D003707 2.8e-63 246.5 357 60.8
BolC4t26634H Brassica oleracea HOM05D003311 ORTHO05D003707 2.8e-63 246.5 357 60.8
CARHR294460 Cardamine hirsuta HOM05D003311 ORTHO05D003707 6.2e-63 245.4 229 58.1
Carub.0007s0062 Capsella rubella HOM05D003311 ORTHO05D003707 3.5e-58 229.6 218 59.6
C01p00120 Brassica napus HOM05D003311 ORTHO05D003707 9.5e-56 221.5 363 55.9
Thhalv10025123m.g Eutrema salsugineum HOM05D003311 ORTHO05D003707 2.8e-55 219.9 182 62.6
Sp7g37040 Schrenkiella parvula HOM05D003311 ORTHO05D003707 6.8e-54 215.3 180 65.0
AL7G10640 Arabidopsis lyrata HOM05D003311 ORTHO05D003707 8.9e-54 214.9 216 56.9
AT4G38770 Arabidopsis thaliana HOM05D003311 ORTHO05D003707 9.8e-53 211.5 216 55.1
Aa31LG6G16430 Aethionema arabicum HOM05D003311 ORTHO05D003707 4.9e-52 209.1 211 56.4
A08p24020 Brassica napus HOM05D003311 ORTHO05D003707 6.4e-52 208.8 185 61.1
BraA08t34359Z Brassica rapa HOM05D003311 ORTHO05D003707 8.3e-52 208.4 185 61.1
BcaC01g00253 Brassica carinata HOM05D003311 ORTHO05D003707 1.4e-51 207.6 185 61.1
C03p77310 Brassica napus HOM05D003311 ORTHO05D003707 1.4e-51 207.6 185 61.1
BolC3t19984H Brassica oleracea HOM05D003311 ORTHO05D003707 1.4e-51 207.6 185 61.1
BcaB03g12224 Brassica carinata HOM05D003311 ORTHO05D003707 3.2e-51 206.5 186 60.8
BraA01t00013Z Brassica rapa HOM05D003311 ORTHO05D003707 7.1e-51 205.3 357 55.7
BcaNung01299 Brassica carinata HOM05D003311 ORTHO05D003707 1.0e-49 201.4 352 55.4
BolC1t00017H Brassica oleracea HOM05D003311 ORTHO05D003707 1.0e-49 201.4 352 55.4
Aa31LG7G15540 Aethionema arabicum HOM05D003311 ORTHO05D003707 5.8e-45 185.7 211 48.3
THA.LOC104807787 Tarenaya hassleriana HOM05D003311 ORTHO05D003707 3.8e-44 183.0 154 58.4
THA.LOC104824774 Tarenaya hassleriana HOM05D003311 ORTHO05D003707 6.4e-44 182.2 327 51.7
Atru.chr5.3229 Acer truncatum HOM05D003311 ORTHO05D003707 1.2e-37 161.4 210 50.0
COL.COLO4_17258 Corchorus olitorius HOM05D003311 ORTHO05D003707 2.2e-36 157.1 238 46.2
TAR628G0207 Trochodendron aralioides HOM05D003311 ORTHO05D003707 6.4e-36 155.6 235 45.5
Duzib052G0176 Durio zibethinus HOM05D003311 ORTHO05D003707 1.9e-35 154.1 219 47.9
Potri.004G168600 Populus trichocarpa HOM05D003311 ORTHO05D003707 5.4e-35 152.5 232 45.7
Thecc.02G066700 Theobroma cacao HOM05D003311 ORTHO05D003707 3.5e-34 149.8 179 49.2
Duzib132G0547 Durio zibethinus HOM05D003311 ORTHO05D003707 4.6e-34 149.4 201 47.8
Cfa005186 Carpinus fangiana HOM05D003311 ORTHO05D003707 1.7e-33 147.5 216 43.1
Potri.009G129900 Populus trichocarpa HOM05D003311 ORTHO05D003707 2.3e-33 147.1 229 45.0
Nn5g29097 Nelumbo nucifera HOM05D003311 ORTHO05D003707 3.0e-33 146.7 222 45.5
Sabra04G0113000 Salix brachista HOM05D003311 ORTHO05D003707 3.0e-33 146.7 232 45.7
CsaV3_2G015730 Cucumis sativus L. HOM05D003311 ORTHO05D003707 3.9e-33 146.4 206 44.7
Phvul.011G026700 Phaseolus vulgaris HOM05D003311 ORTHO05D003707 3.9e-33 146.4 210 43.8
Cpa.g.sc37.189 Carica papaya HOM05D003311 ORTHO05D003707 6.6e-33 145.6 186 50.0
MELO3C020785.2 Cucumis melo HOM05D003311 ORTHO05D003707 6.6e-33 145.6 206 45.1
Ciclev10029326m.g Citrus clementina HOM05D003311 ORTHO05D003707 2.5e-32 143.7 178 47.2
Sed0012527 Sechium edule HOM05D003311 ORTHO05D003707 3.3e-32 143.3 206 44.2
Duzib099G0001 Durio zibethinus HOM05D003311 ORTHO05D003707 4.3e-32 142.9 221 43.9
Sabra09G0099300 Salix brachista HOM05D003311 ORTHO05D003707 9.6e-32 141.7 207 44.4
CiPaw.06G125100 Carya illinoinensis HOM05D003311 ORTHO05D003707 1.6e-31 141.0 206 46.1
Gorai.002G193500 Gossypium raimondii HOM05D003311 ORTHO05D003707 3.6e-31 139.8 217 42.9
GSVIVG01024081001 Vitis vinifera HOM05D003311 ORTHO05D003707 3.6e-31 139.8 204 45.1
ClCG02G011360 Citrullus lanatus HOM05D003311 ORTHO05D003707 4.8e-31 139.4 231 42.9
ClCG02G011540 Citrullus lanatus HOM05D003311 ORTHO05D003707 4.8e-31 139.4 231 42.9
Gohir.D01G156000 Gossypium hirsutum HOM05D003311 ORTHO05D003707 4.8e-31 139.4 217 42.9
Gohir.A01G164100 Gossypium hirsutum HOM05D003311 ORTHO05D003707 1.1e-30 138.3 217 42.4
Lj3g0005308 Lotus japonicus HOM05D003311 ORTHO05D003707 1.1e-30 138.3 169 49.7
Actinidia20487 Actinidia chinensis HOM05D000144 ORTHO05D003707 4.0e-30 136.3 189 45.5
Lalb_Chr01g0001331 Lupinus albus HOM05D003311 ORTHO05D003707 4.0e-30 136.3 157 49.0
Hund00043 Selenicereus undatus HOM05D003311 ORTHO05D003707 5.3e-30 136.0 217 44.7
AUR62013087 Chenopodium quinoa HOM05D003311 ORTHO05D003707 6.9e-30 135.6 221 41.6
Lj9A389T67 Lonicera japonica HOM05D003311 ORTHO05D003707 6.9e-30 135.6 177 49.7
QL11p047628 Quercus lobata HOM05D003311 ORTHO05D003707 6.9e-30 135.6 177 48.0
TWI75G0647 Tripterygium wilfordii HOM05D003311 ORTHO05D003707 2.0e-29 134.0 219 42.0
RcHm_v2.0_Chr6g0245161 Rosa chinensis HOM05D003311 ORTHO05D003707 2.6e-29 133.7 183 48.1
Prupe.8G160900 Prunus persica HOM05D003311 ORTHO05D003707 4.5e-29 132.9 229 44.5
Actinidia00597 Actinidia chinensis HOM05D003311 ORTHO05D003707 5.8e-29 132.5 189 42.9
Medtr4g075333 Medicago truncatula HOM05D003311 ORTHO05D003707 5.8e-29 132.5 141 51.8
Atru.chr5.3230 Acer truncatum HOM05D003311 ORTHO05D003707 7.6e-29 132.1 195 45.1
Ciclev10028101m.g Citrus clementina HOM05D003311 ORTHO05D003707 7.6e-29 132.1 231 42.4
TPR.G17164 Trifolium pratense HOM05D003311 ORTHO05D003707 9.9e-29 131.7 162 48.8
Hma1.2p1_4000F.1_g338120 Hydrangea macrophylla HOM05D003311 ORTHO05D003707 1.3e-28 131.3 190 43.2
DCAR_022953 Daucus carota HOM05D003311 ORTHO05D003707 2.9e-28 130.2 218 42.7
Dinv04967 Davidia involucrata HOM05D003311 ORTHO05D003707 6.4e-28 129.0 203 44.3
Lalb_Chr03g0024711 Lupinus albus HOM05D003311 ORTHO05D003707 6.4e-28 129.0 195 44.6
MSTRG.16857 Avicennia marina HOM05D003311 ORTHO05D003707 8.4e-28 128.6 208 41.8
MSTRG.5426 Avicennia marina HOM05D003311 ORTHO05D003707 8.4e-28 128.6 216 42.1
Eucgr.L01869 Eucalyptus grandis HOM05D003311 ORTHO05D003707 1.1e-27 128.3 198 42.4
Sc08g0003160 Simmondsia chinensis HOM05D003311 ORTHO05D003707 1.1e-27 128.3 202 41.1
MD05G1116400 Malus domestica HOM05D003311 ORTHO05D003707 3.2e-27 126.7 216 42.1
Aqoxy5G01798 Aquilegia oxysepala HOM05D003311 ORTHO05D003707 4.2e-27 126.3 225 42.2
AUR62010091 Chenopodium quinoa HOM05D003311 ORTHO05D003707 4.2e-27 126.3 192 41.7
Lsat_1_v5_gn_3_45680 Lactuca sativa HOM05D003311 ORTHO05D003707 9.3e-27 125.2 144 48.6
ClCG00G004470 Citrullus lanatus HOM05D003311 ORTHO05D003707 2.1e-26 124.0 173 45.1
Peaxi162Scf00538g00520 Petunia axillaris HOM05D003311 ORTHO05D003707 2.1e-26 124.0 183 43.7
SGA_v2.0_scaffold32G13229 Striga asiatica HOM05D003311 ORTHO05D003707 3.5e-26 123.2 210 41.0
Peaxi162Scf00362g00962 Petunia axillaris HOM05D003311 ORTHO05D003707 4.6e-26 122.9 206 42.7
CANSAT25G1598 Cannabis sativa HOM05D003311 ORTHO05D003707 6.0e-26 122.5 240 37.9
Ca_19004_v3 Cicer arietinum L. HOM05D003311 ORTHO05D003707 7.9e-26 122.1 162 45.1
HanXRQChr10g0289061 Helianthus annuus HOM05D003311 ORTHO05D003707 1.8e-25 120.9 191 43.5
Oeu010053.1 Olea europaea HOM05D003311 ORTHO05D003707 1.8e-25 120.9 195 42.1
GSVIVG01024076001 Vitis vinifera HOM05D003311 ORTHO05D003707 1.8e-25 120.9 203 44.8
DCAR_003701 Daucus carota HOM05D003311 ORTHO05D003707 3.0e-25 120.2 217 42.4
FvH4_2g01970 Fragaria vesca HOM05D003311 ORTHO05D003707 3.0e-25 120.2 140 48.6
FAN15G0502 Fragaria x ananassa HOM05D003311 ORTHO05D003707 3.0e-25 120.2 140 48.6
FAN20G1603 Fragaria x ananassa HOM05D003311 ORTHO05D003707 3.0e-25 120.2 140 48.6
FAN27G1129 Fragaria x ananassa HOM05D003311 ORTHO05D003707 3.0e-25 120.2 140 48.6
CAN.G588.28 Capsicum annuum HOM05D003311 ORTHO05D003707 3.9e-25 119.8 212 40.6
CiPaw.05G077500 Carya illinoinensis HOM05D003311 ORTHO05D003707 3.9e-25 119.8 228 39.5
TWI79G0740 Tripterygium wilfordii HOM05D003311 ORTHO05D003707 6.7e-25 119.0 178 42.1
vmacro02251 Vaccinium macrocarpon HOM05D003311 ORTHO05D003707 6.7e-25 119.0 186 44.1
FAN24G0785 Fragaria x ananassa HOM05D003311 ORTHO05D003707 8.7e-25 118.6 140 47.9
Gorai.012G153300 Gossypium raimondii HOM05D003311 ORTHO05D003707 8.7e-25 118.6 155 45.2
HanXRQChr07g0186871 Helianthus annuus HOM05D003311 ORTHO05D003707 8.7e-25 118.6 238 40.8
TAR376G0773 Trochodendron aralioides HOM05D003311 ORTHO05D003707 8.7e-25 118.6 189 41.3
Gohir.D04G164900 Gossypium hirsutum HOM05D003311 ORTHO05D003707 1.1e-24 118.2 160 45.0
Rhsim11G0187900 Rhododendron simsii HOM05D003311 ORTHO05D003707 1.1e-24 118.2 165 44.2
Ah.01g009150 Amaranthus hybridus HOM05D003396 ORTHO05D003646 1.5e-24 117.9 128 45.3
Haze_02195 Corylus avellana HOM05D003311 ORTHO05D003707 1.9e-24 117.5 220 40.9
Gohir.A04G122900 Gossypium hirsutum HOM05D003311 ORTHO05D003707 1.9e-24 117.5 155 44.5
HanXRQChr10g0294871 Helianthus annuus HOM05D003311 ORTHO05D003707 1.9e-24 117.5 204 39.2
Duzib248G1175 Durio zibethinus HOM05D003311 ORTHO05D003707 2.5e-24 117.1 162 45.7
Glyma.04G005400 Glycine max HOM05D003311 ORTHO05D003707 2.5e-24 117.1 189 42.3
MD10G1118600 Malus domestica HOM05D003311 ORTHO05D003707 2.5e-24 117.1 214 42.5
QL05p072824 Quercus lobata HOM05D003311 ORTHO05D008853 7.4e-24 115.5 111 52.3
CsaV3_7G000820 Cucumis sativus L. HOM05D000144 ORTHO05D003707 9.6e-24 115.2 193 39.9
ECA246G0279 Erigeron canadensis HOM05D003311 ORTHO05D003707 9.6e-24 115.2 199 42.7
Phvul.009G024900 Phaseolus vulgaris HOM05D003311 ORTHO05D003707 1.3e-23 114.8 182 44.0
Psat7g138320 Pisum sativum HOM05D003311 ORTHO05D003707 1.6e-23 114.4 142 46.5
VMungo1309G0179 Vigna mungo HOM05D003311 ORTHO05D003707 2.1e-23 114.0 182 42.9
PGSC0003DMG400001243 Solanum tuberosum HOM05D003311 ORTHO05D003707 2.8e-23 113.6 135 45.9
PGSC0003DMG400004441 Solanum tuberosum HOM05D003311 ORTHO05D003707 2.8e-23 113.6 153 44.4
EL10Ac9g21436 Beta vulgaris HOM05D003311 ORTHO05D003707 3.6e-23 113.2 138 44.2
HanXRQChr10g0290731 Helianthus annuus HOM05D003311 ORTHO05D003707 3.6e-23 113.2 169 41.4
Nn1g05901 Nelumbo nucifera HOM05D003311 ORTHO05D003707 3.6e-23 113.2 189 43.4
ECA234G1895 Erigeron canadensis HOM05D003311 ORTHO05D003707 4.8e-23 112.8 166 42.2
Manes.11G090200 Manihot esculenta HOM05D003311 ORTHO05D003707 4.8e-23 112.8 209 42.1
Nitab4.5_0013889g0010 Nicotiana tabacum HOM05D003311 ORTHO05D003707 4.8e-23 112.8 204 39.2
Sopen01g053220 Solanum pennellii HOM05D003311 ORTHO05D003707 6.2e-23 112.5 195 36.9
MELO3C013376.2 Cucumis melo HOM05D003311 ORTHO05D003707 8.1e-23 112.1 195 38.5
Nitab4.5_0000956g0190 Nicotiana tabacum HOM05D003311 ORTHO05D003707 8.1e-23 112.1 210 39.5
CSS0033713 Camellia sinensis var. sinensis HOM05D003311 ORTHO05D003707 1.4e-22 111.3 190 41.1
PGSC0003DMG400001631 Solanum tuberosum HOM05D003311 ORTHO05D003707 1.4e-22 111.3 139 43.9
Sed0022693 Sechium edule HOM05D003311 ORTHO05D003707 1.8e-22 110.9 167 40.1
Hund06406 Selenicereus undatus HOM05D003396 ORTHO05D003646 2.4e-22 110.5 167 37.7
SGA_v2.0_scaffold207G41882 Striga asiatica HOM05D003311 ORTHO05D003707 2.4e-22 110.5 183 39.3
Sopen10g024830 Solanum pennellii HOM05D003311 ORTHO05D003707 3.1e-22 110.2 174 42.0
arahy.Tifrunner.gnm1.ann1.6SU9IG Arachis hypogaea HOM05D003311 ORTHO05D003707 9.0e-22 108.6 167 43.7
arahy.Tifrunner.gnm1.ann1.M74JA5 Arachis hypogaea HOM05D003311 ORTHO05D003707 1.5e-21 107.8 167 44.9
MBI05_g26897_MAGBIO Magnolia biondii HOM05D003311 ORTHO05D003707 1.5e-21 107.8 127 43.3
Oeu008607.1 Olea europaea HOM05D003311 ORTHO05D003707 1.5e-21 107.8 207 39.1
Oeu008608.1 Olea europaea HOM05D003311 ORTHO05D003707 2.0e-21 107.5 205 39.5
Sopen10g024820 Solanum pennellii HOM05D003311 ORTHO05D003707 2.6e-21 107.1 185 41.1
Eucgr.I01377 Eucalyptus grandis HOM05D003311 ORTHO05D003707 3.4e-21 106.7 192 39.6
unitig_0.g832 Utricularia gibba HOM05D003311 ORTHO05D003707 4.5e-21 106.3 162 40.1
Solyc10g054900.2 Solanum lycopersicum HOM05D003311 ORTHO05D003707 7.6e-21 105.5 187 42.2
ClCG02G004300 Citrullus lanatus HOM05D003311 ORTHO05D003707 9.9e-21 105.1 263 33.5
MBI09_g00986_MAGBIO Magnolia biondii HOM05D003311 ORTHO05D003707 2.2e-20 104.0 232 34.9
PGR042G2254 Punica granatum HOM05D003311 ORTHO05D003707 2.2e-20 104.0 219 36.5
Aqoxy5G01799 Aquilegia oxysepala HOM05D003311 ORTHO05D003707 2.9e-20 103.6 220 35.5
ATR0810G037 Amborella trichopoda HOM05D003311 ORTHO05D003707 3.8e-20 103.2 183 36.1
Sopen10g024840 Solanum pennellii HOM05D003311 ORTHO05D003707 3.8e-20 103.2 138 44.2
CAN.G104.8 Capsicum annuum HOM05D003311 ORTHO05D003707 8.4e-20 102.1 173 41.6
MBI05_g46239_MAGBIO Magnolia biondii HOM05D003311 ORTHO05D003707 8.4e-20 102.1 188 36.7
Rhsim05G0063000 Rhododendron simsii HOM05D003311 ORTHO05D003707 3.2e-19 100.1 191 38.2
SalBow3G2231 Salvia bowleyana HOM05D003311 ORTHO05D003707 7.1e-19 99.0 184 35.3
Oeu046127.1 Olea europaea HOM05D003311 ORTHO05D003707 1.6e-18 97.8 243 36.2
SalBow6G3538 Salvia bowleyana HOM05D003311 ORTHO05D003707 1.6e-18 97.8 212 38.7
CSS0038966 Camellia sinensis var. sinensis HOM05D003311 ORTHO05D003707 2.1e-18 97.4 210 33.3
PSO700G0002 Papaver somniferum HOM05D003311 ORTHO05D003707 3.5e-18 96.7 222 36.5
PSO170G2430 Papaver somniferum HOM05D003311 ORTHO05D003707 1.0e-17 95.1 222 36.0
Nitab4.5_0000980g0220 Nicotiana tabacum HOM05D003311 ORTHO05D003707 3.9e-17 93.2 168 38.1
CDE08G0629 Ceratophyllum demersum HOM05D003311 ORTHO05D003707 1.9e-16 90.9 252 32.9
QL09p030113 Quercus lobata HOM05D003311 ORTHO05D003707 7.4e-16 89.0 86 53.5
Nitab4.5_0000283g0120 Nicotiana tabacum HOM05D003311 ORTHO05D003707 9.6e-16 88.6 135 40.0
MBI05_g25817_MAGBIO Magnolia biondii HOM05D003311 ORTHO05D003707 1.3e-15 88.2 114 39.5
unitig_37.g12824 Utricularia gibba HOM05D003311 ORTHO05D003707 1.6e-15 87.8 163 38.7
unitig_60.g25871 Utricularia gibba HOM05D003311 ORTHO05D003707 2.1e-15 87.4 203 34.0
DCAR_003704 Daucus carota HOM05D003311 ORTHO05D003707 1.8e-14 84.3 216 32.9
unitig_744.g24265 Utricularia gibba HOM05D003311 ORTHO05D003707 1.8e-14 84.3 144 38.9
A01p00090 Brassica napus HOM05D003311 ORTHO05D003707 2.4e-14 84.0 91 56.0
Zm00001eb026460 Zea mays HOM05D003311 ORTHO05D003707 1.5e-13 81.3 226 31.4
unitig_21.g20802 Utricularia gibba HOM05D003311 ORTHO05D003707 3.4e-13 80.1 179 34.6
MSTRG.20036 Avicennia marina HOM05D003311 ORTHO05D003707 1.0e-12 78.6 87 49.4
DCAR_003702 Daucus carota HOM05D003311 ORTHO05D003707 1.7e-12 77.8 185 33.5
Os03g0245200 Oryza sativa ssp. japonica HOM05D003311 ORTHO05D003707 1.2e-10 71.6 187 32.1
Oeu046128.1 Olea europaea HOM05D000700 ORTHO05D000397 6.0e-10 69.3 228 32.9
Os10g0148100 Oryza sativa ssp. japonica HOM05D003311 ORTHO05D003707 6.7e-09 65.9 217 28.1
QL04p095545 Quercus lobata HOM05D003311 ORTHO05D003707 6.7e-09 65.9 69 53.6
Zm00001eb398790 Zea mays HOM05D003311 ORTHO05D003707 6.7e-09 65.9 78 44.9
Ciclev10029494m.g Citrus clementina HOM05D003311 ORTHO05D003707 7.4e-08 62.4 149 32.9
Zm00001eb010490 Zea mays HOM05D003311 ORTHO05D003707 9.6e-08 62.0 158 36.1
Zm00001eb026530 Zea mays HOM05D003311 ORTHO05D003707 1.6e-07 61.2 166 34.3
MBI05_g26896_MAGBIO Magnolia biondii HOM05D003311 ORTHO05D003707 6.3e-07 59.3 119 32.8
vmacro17380 Vaccinium macrocarpon HOM05D003311 ORTHO05D003707 1.1e-06 58.5 86 41.9


User provided reference genes

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