Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G20835 Arabidopsis thaliana HOM05D003865 ORTHO05D004466 7.5e-35 149.8 69 100.0
AL3G54020 Arabidopsis lyrata HOM05D003865 ORTHO05D004466 6.4e-34 146.7 69 97.1
BcaB08g34942 Brassica carinata HOM05D003865 ORTHO05D004466 6.4e-34 146.7 69 97.1
BraA09t41256Z Brassica rapa HOM05D003865 ORTHO05D004466 6.4e-34 146.7 69 97.1
Sp3g34080 Schrenkiella parvula HOM05D003865 ORTHO05D004466 6.4e-34 146.7 69 97.1
CARHR111560 Cardamine hirsuta HOM05D003865 ORTHO05D004466 8.3e-34 146.4 69 97.1
BcaC07g41193 Brassica carinata HOM05D003865 ORTHO05D004466 1.4e-33 145.6 69 95.7
C08p41990 Brassica napus HOM05D003865 ORTHO05D004466 1.4e-33 145.6 69 95.7
BolC8t51762H Brassica oleracea HOM05D003865 ORTHO05D004466 1.4e-33 145.6 69 95.7
Thhalv10002196m.g Eutrema salsugineum HOM05D003865 ORTHO05D004466 3.2e-33 144.4 69 95.7
BcaC06g36774 Brassica carinata HOM05D003865 ORTHO05D004466 4.1e-33 144.1 69 94.2
BolC7t40459H Brassica oleracea HOM05D003865 ORTHO05D004466 4.1e-33 144.1 69 94.2
Carub.0003s3548 Capsella rubella HOM05D003865 ORTHO05D004466 1.2e-32 142.5 69 94.2
Aa31LG8G17640 Aethionema arabicum HOM05D003865 ORTHO05D004466 6.6e-31 136.7 69 88.4
A09p58700 Brassica napus HOM05D003865 ORTHO05D004466 3.1e-28 127.9 60 96.7
THA.LOC109117138 Tarenaya hassleriana HOM05D003865 ORTHO05D004466 9.9e-27 122.9 69 79.7
HanXRQChr17g0554211 Helianthus annuus HOM05D003865 ORTHO05D004466 4.1e-25 117.5 69 76.8
MD09G1091900 Malus domestica HOM05D003865 ORTHO05D004466 7.1e-25 116.7 69 71.0
Cc00_g29860 Coffea canephora HOM05D003865 ORTHO05D004466 1.2e-24 115.9 69 72.5
Potri.019G104100 Populus trichocarpa HOM05D003865 ORTHO05D004466 1.2e-24 115.9 69 75.4
Potri.019G104300 Populus trichocarpa HOM05D003865 ORTHO05D004466 1.2e-24 115.9 69 75.4
CSS0037327 Camellia sinensis var. sinensis HOM05D003865 ORTHO05D004466 1.6e-24 115.5 69 72.5
Gohir.D01G015600 Gossypium hirsutum HOM05D003865 ORTHO05D004466 2.7e-24 114.8 69 72.5
Gorai.002G017300 Gossypium raimondii HOM05D003865 ORTHO05D004466 2.7e-24 114.8 69 72.5
CANSAT64G1248 Cannabis sativa HOM05D003865 ORTHO05D004466 3.5e-24 114.4 69 71.0
Gohir.A01G015600 Gossypium hirsutum HOM05D003865 ORTHO05D004466 4.6e-24 114.0 69 72.5
Potri.013G145100 Populus trichocarpa HOM05D003865 ORTHO05D004466 4.6e-24 114.0 69 72.5
Prupe.3G233100 Prunus persica HOM05D003865 ORTHO05D004466 4.6e-24 114.0 69 69.6
ATR0191G001 Amborella trichopoda HOM05D003865 ORTHO05D004466 7.8e-24 113.2 69 73.9
Lalb_Chr22g0356421 Lupinus albus HOM05D003865 ORTHO05D004466 7.8e-24 113.2 67 74.6
MBI18_g32892_MAGBIO Magnolia biondii HOM05D003865 ORTHO05D004466 7.8e-24 113.2 69 71.0
Phvul.005G085500 Phaseolus vulgaris HOM05D003865 ORTHO05D004466 7.8e-24 113.2 69 73.9
Potri.001G405400 Populus trichocarpa HOM05D003865 ORTHO05D004466 7.8e-24 113.2 69 73.9
C01p48910 Brassica napus HOM05D003865 ORTHO05D004466 1.0e-23 112.8 69 71.0
BolC1t04854H Brassica oleracea HOM05D003865 ORTHO05D004466 1.0e-23 112.8 69 71.0
CSS0011087 Camellia sinensis var. sinensis HOM05D003865 ORTHO05D004466 1.0e-23 112.8 68 70.6
CSS0044246 Camellia sinensis var. sinensis HOM05D003865 ORTHO05D004466 1.0e-23 112.8 68 70.6
Glyma.12G220500 Glycine max HOM05D003865 ORTHO05D004466 1.0e-23 112.8 69 73.9
Nn1g03940 Nelumbo nucifera HOM05D003865 ORTHO05D004466 1.0e-23 112.8 69 71.0
Nn1g06711 Nelumbo nucifera HOM05D003865 ORTHO05D004466 1.0e-23 112.8 69 71.0
PGR142G1950 Punica granatum HOM05D003865 ORTHO05D004466 1.0e-23 112.8 69 71.0
EL10Ac9g20679 Beta vulgaris HOM05D003865 ORTHO05D004466 1.7e-23 112.1 69 68.1
CiPaw.04G123400 Carya illinoinensis HOM05D003865 ORTHO05D004466 1.7e-23 112.1 69 72.5
Ciclev10017406m.g Citrus clementina HOM05D003865 ORTHO05D004466 1.7e-23 112.1 69 72.5
Duzib248G0431 Durio zibethinus HOM05D003865 ORTHO05D004466 1.7e-23 112.1 69 72.5
Medtr2g090110 Medicago truncatula HOM05D003865 ORTHO05D004466 1.7e-23 112.1 68 72.1
Prupe.4G187900 Prunus persica HOM05D003865 ORTHO05D004466 1.7e-23 112.1 69 73.9
Lsat_1_v5_gn_8_131501 Lactuca sativa HOM05D003865 ORTHO05D004466 2.3e-23 111.7 69 72.5
RcHm_v2.0_Chr2g0162101 Rosa chinensis HOM05D003865 ORTHO05D004466 2.3e-23 111.7 67 74.6
TWI18G0639 Tripterygium wilfordii HOM05D003865 ORTHO05D004466 2.3e-23 111.7 67 73.1
Migut.H01032 Erythranthe guttata HOM05D003865 ORTHO05D004466 3.0e-23 111.3 69 69.6
Glyma.12G201800 Glycine max HOM05D003865 ORTHO05D004466 3.0e-23 111.3 67 71.6
Glyma.13G300400 Glycine max HOM05D003865 ORTHO05D004466 3.0e-23 111.3 67 71.6
Gohir.D02G182200 Gossypium hirsutum HOM05D003865 ORTHO05D004466 3.0e-23 111.3 69 72.5
Gorai.005G204700 Gossypium raimondii HOM05D003865 ORTHO05D004466 3.0e-23 111.3 69 72.5
Lsat_1_v5_gn_8_131640 Lactuca sativa HOM05D003865 ORTHO05D004466 3.0e-23 111.3 67 73.1
Manes.15G084300 Manihot esculenta HOM05D003865 ORTHO05D004466 3.0e-23 111.3 69 71.0
THA.LOC109116854 Tarenaya hassleriana HOM05D003865 ORTHO05D004466 3.0e-23 111.3 69 71.0
CiPaw.03G171100 Carya illinoinensis HOM05D003865 ORTHO05D004466 3.9e-23 110.9 69 69.6
Hma1.2p1_0213F.1_g090470 Hydrangea macrophylla HOM05D003865 ORTHO05D004466 3.9e-23 110.9 69 71.0
TPR.G35550 Trifolium pratense HOM05D003865 ORTHO05D004466 3.9e-23 110.9 68 72.1
Hma1.2p1_1143F.1_g261110 Hydrangea macrophylla HOM05D003865 ORTHO05D004466 5.1e-23 110.5 69 72.5
Lalb_Chr19g0134391 Lupinus albus HOM05D003865 ORTHO05D004466 5.1e-23 110.5 69 73.9
BcaB04g20919 Brassica carinata HOM05D003865 ORTHO05D004466 6.6e-23 110.2 69 68.1
Eucgr.K00940 Eucalyptus grandis HOM05D003865 ORTHO05D004466 6.6e-23 110.2 69 69.6
Manes.03G115200 Manihot esculenta HOM05D003865 ORTHO05D004466 6.6e-23 110.2 67 73.1
Phvul.005G107201 Phaseolus vulgaris HOM05D003865 ORTHO05D004466 6.6e-23 110.2 67 70.1
PGR083G1332 Punica granatum HOM05D003865 ORTHO05D004466 6.6e-23 110.2 69 71.0
Sopen07g031650 Solanum pennellii HOM05D003865 ORTHO05D004466 6.6e-23 110.2 69 73.9
BcaC09g48519 Brassica carinata HOM05D003865 ORTHO05D004466 8.6e-23 109.8 69 69.6
CANSAT11G1994 Cannabis sativa HOM05D003865 ORTHO05D004466 8.6e-23 109.8 69 69.6
Ca_01531_v3 Cicer arietinum L. HOM05D003865 ORTHO05D004466 8.6e-23 109.8 68 69.1
Duzib132G0908 Durio zibethinus HOM05D003865 ORTHO05D004466 8.6e-23 109.8 69 71.0
Eucgr.F01087 Eucalyptus grandis HOM05D003865 ORTHO05D004466 8.6e-23 109.8 69 71.0
Gorai.009G432200 Gossypium raimondii HOM05D003865 ORTHO05D004466 8.6e-23 109.8 69 71.0
AT3G15534 Arabidopsis thaliana HOM05D003865 ORTHO05D004466 1.1e-22 109.4 69 69.6
Cfa014557 Carpinus fangiana HOM05D003865 ORTHO05D004466 1.1e-22 109.4 67 70.1
COL.COLO4_09463 Corchorus olitorius HOM05D003865 ORTHO05D004466 1.1e-22 109.4 69 69.6
MELO3C013523.2 Cucumis melo HOM05D003865 ORTHO05D004466 1.1e-22 109.4 69 65.2
TWI36G0902 Tripterygium wilfordii HOM05D003865 ORTHO05D004466 1.1e-22 109.4 69 71.0
Duzib268G1549 Durio zibethinus HOM05D003865 ORTHO05D004466 1.5e-22 109.0 69 69.6
Phvul.011G148500 Phaseolus vulgaris HOM05D003865 ORTHO05D004466 1.5e-22 109.0 67 73.1
QL08p037564 Quercus lobata HOM05D003865 ORTHO05D004466 1.5e-22 109.0 67 71.6
Sed0011440 Sechium edule HOM05D003865 ORTHO05D004466 1.5e-22 109.0 69 66.7
unitig_0.g2049 Utricularia gibba HOM05D003865 ORTHO05D004466 1.5e-22 109.0 67 70.1
BraA01t03904Z Brassica rapa HOM05D003865 ORTHO05D004466 1.9e-22 108.6 69 68.1
Cpa.g.sc34.113 Carica papaya HOM05D003865 ORTHO05D004466 1.9e-22 108.6 67 65.7
CsaV3_7G004170 Cucumis sativus L. HOM05D003865 ORTHO05D004466 1.9e-22 108.6 69 66.7
Solyc07g063470.1 Solanum lycopersicum HOM05D003865 ORTHO05D004466 1.9e-22 108.6 69 72.5
Cc05_g12570 Coffea canephora HOM05D003865 ORTHO05D004466 2.5e-22 108.2 69 71.0
Glyma.06G249600 Glycine max HOM05D003865 ORTHO05D004466 2.5e-22 108.2 69 72.5
Glyma.12G148300 Glycine max HOM05D003865 ORTHO05D004466 2.5e-22 108.2 69 72.5
Hma1.2p1_1143F.1_g261120 Hydrangea macrophylla HOM05D003865 ORTHO05D004466 2.5e-22 108.2 69 69.6
MD17G1081800 Malus domestica HOM05D003865 ORTHO05D004466 2.5e-22 108.2 69 66.7
BcaB07g33385 Brassica carinata HOM05D003865 ORTHO05D004466 3.3e-22 107.8 69 68.1
A06p01500 Brassica napus HOM05D003865 ORTHO05D004466 3.3e-22 107.8 69 68.1
BolC6t35932H Brassica oleracea HOM05D003865 ORTHO05D004466 3.3e-22 107.8 69 68.1
BraA06t23371Z Brassica rapa HOM05D003865 ORTHO05D004466 3.3e-22 107.8 69 68.1
CARHR090600 Cardamine hirsuta HOM05D003865 ORTHO05D004466 3.3e-22 107.8 69 66.7
Lj3g0025843 Lotus japonicus HOM05D003865 ORTHO05D004466 3.3e-22 107.8 69 71.0
TWI75G0545 Tripterygium wilfordii HOM05D003865 ORTHO05D004466 3.3e-22 107.8 69 71.0
VMungo1127G2113 Vigna mungo HOM05D003865 ORTHO05D004466 3.3e-22 107.8 67 73.1
Duzib170G0518 Durio zibethinus HOM05D003865 ORTHO05D004466 4.3e-22 107.5 69 69.6
HanXRQChr17g0559351 Helianthus annuus HOM05D003865 ORTHO05D004466 4.3e-22 107.5 69 69.6
PGSC0003DMG400018392 Solanum tuberosum HOM05D003865 ORTHO05D004466 4.3e-22 107.5 69 69.6
Thecc.07G074300 Theobroma cacao HOM05D003865 ORTHO05D004466 4.3e-22 107.5 69 68.1
Sc06g0009210 Simmondsia chinensis HOM05D003865 ORTHO05D004466 5.6e-22 107.1 69 68.1
Sopen07g028410 Solanum pennellii HOM05D003865 ORTHO05D004466 5.6e-22 107.1 69 69.6
BcaC08g43469 Brassica carinata HOM05D003865 ORTHO05D004466 7.3e-22 106.7 69 66.7
A05p33870 Brassica napus HOM05D003865 ORTHO05D004466 7.3e-22 106.7 69 65.2
C06p08510 Brassica napus HOM05D003865 ORTHO05D004466 7.3e-22 106.7 69 66.7
ClCG02G017420 Citrullus lanatus HOM05D003865 ORTHO05D004466 7.3e-22 106.7 69 63.8
MD11G1238900 Malus domestica HOM05D003865 ORTHO05D004466 7.3e-22 106.7 69 68.1
Potri.011G124800 Populus trichocarpa HOM05D003865 ORTHO05D004466 7.3e-22 106.7 69 69.6
RcHm_v2.0_Chr5g0035051 Rosa chinensis HOM05D003865 ORTHO05D004466 7.3e-22 106.7 69 69.6
PGSC0003DMG400019299 Solanum tuberosum HOM05D003865 ORTHO05D004466 7.3e-22 106.7 69 72.5
HanXRQChr17g0559361 Helianthus annuus HOM05D003865 ORTHO05D004466 9.6e-22 106.3 69 68.1
Sed0016537 Sechium edule HOM05D003865 ORTHO05D004466 9.6e-22 106.3 69 65.2
TPR.G32874 Trifolium pratense HOM05D003865 ORTHO05D004466 9.6e-22 106.3 69 69.6
TWI39G0307 Tripterygium wilfordii HOM05D003865 ORTHO05D004466 9.6e-22 106.3 67 67.2
BcaC05g28963 Brassica carinata HOM05D003865 ORTHO05D004466 1.2e-21 105.9 69 63.8
C05p51570 Brassica napus HOM05D003865 ORTHO05D004466 1.2e-21 105.9 69 63.8
BolC5t33845H Brassica oleracea HOM05D003865 ORTHO05D004466 1.2e-21 105.9 69 63.8
CiPaw.11G174800 Carya illinoinensis HOM05D003865 ORTHO05D004466 1.2e-21 105.9 69 66.7
GSVIVG01030567001 Vitis vinifera HOM05D003865 ORTHO05D004466 1.2e-21 105.9 67 65.7
BcaB06g29589 Brassica carinata HOM05D003865 ORTHO05D004466 1.6e-21 105.5 69 65.2
Carub.0003s1527 Capsella rubella HOM05D003865 ORTHO05D004466 1.6e-21 105.5 69 68.1
Solyc07g054470.1 Solanum lycopersicum HOM05D003865 ORTHO05D004466 1.6e-21 105.5 69 68.1
EL10Ac4g08086 Beta vulgaris HOM05D003865 ORTHO05D004466 2.1e-21 105.1 67 67.2
CSS0035059 Camellia sinensis var. sinensis HOM05D003865 ORTHO05D004466 2.1e-21 105.1 67 68.7
Thhalv10021922m.g Eutrema salsugineum HOM05D003865 ORTHO05D004466 2.1e-21 105.1 69 66.7
HanXRQChr05g0156551 Helianthus annuus HOM05D003865 ORTHO05D004466 2.1e-21 105.1 69 66.7
HanXRQChr08g0235631 Helianthus annuus HOM05D003865 ORTHO05D004466 2.1e-21 105.1 69 65.2
Glyma.13G281000 Glycine max HOM05D003865 ORTHO05D004466 3.6e-21 104.4 69 71.0
CARHR043080 Cardamine hirsuta HOM05D003865 ORTHO05D004466 4.7e-21 104.0 69 63.8
Ciclev10010786m.g Citrus clementina HOM05D003865 ORTHO05D004466 6.2e-21 103.6 69 66.7
Thhalv10012262m.g Eutrema salsugineum HOM05D003865 ORTHO05D004466 6.2e-21 103.6 69 62.3
Carub.0001s4201 Capsella rubella HOM05D003865 ORTHO05D004466 1.1e-20 102.8 69 63.8
Migut.M00867 Erythranthe guttata HOM05D003865 ORTHO05D004466 1.1e-20 102.8 68 66.2
HanXRQChr05g0156511 Helianthus annuus HOM05D003865 ORTHO05D004466 1.1e-20 102.8 69 65.2
PGSC0003DMG400025047 Solanum tuberosum HOM05D003865 ORTHO05D004466 1.1e-20 102.8 67 67.2
unitig_899.g15557 Utricularia gibba HOM05D003865 ORTHO05D004466 1.1e-20 102.8 67 65.7
Lsat_1_v5_gn_5_7081 Lactuca sativa HOM05D003865 ORTHO05D004466 1.4e-20 102.4 69 66.7
Manes.12G087700 Manihot esculenta HOM05D003865 ORTHO05D004466 1.4e-20 102.4 67 62.7
AT1G52855 Arabidopsis thaliana HOM05D003865 ORTHO05D004466 2.4e-20 101.7 69 63.8
MD03G1221400 Malus domestica HOM05D003865 ORTHO05D004466 2.4e-20 101.7 69 66.7
Cfa020526 Carpinus fangiana HOM05D003865 ORTHO05D004466 3.1e-20 101.3 67 65.7
Hma1.2p1_1053F.1_g252410 Hydrangea macrophylla HOM05D003865 ORTHO05D004466 4.0e-20 100.9 69 68.1
CSS0032128 Camellia sinensis var. sinensis HOM05D003865 ORTHO05D004466 6.9e-20 100.1 68 67.6
MELO3C016544.2 Cucumis melo HOM05D003865 ORTHO05D004466 8.9e-20 99.8 69 62.3
Psat2g056680 Pisum sativum HOM05D003865 ORTHO05D004466 8.9e-20 99.8 69 68.1
CSS0016755 Camellia sinensis var. sinensis HOM05D003865 ORTHO05D004466 1.5e-19 99.0 69 60.9
Os07g0564200 Oryza sativa ssp. japonica HOM05D003865 ORTHO05D004466 1.5e-19 99.0 68 66.2
Migut.O00868 Erythranthe guttata HOM05D003865 ORTHO05D004466 2.0e-19 98.6 68 64.7
CSS0031855 Camellia sinensis var. sinensis HOM05D003865 ORTHO05D004466 2.6e-19 98.2 69 59.4
Lsat_1_v5_gn_9_85200 Lactuca sativa HOM05D003865 ORTHO05D004466 2.6e-19 98.2 67 65.7
Gohir.A03G159100 Gossypium hirsutum HOM05D003865 ORTHO05D004466 1.7e-18 95.5 56 78.6
Gohir.A01G067400 Gossypium hirsutum HOM05D003865 ORTHO05D004466 4.9e-18 94.0 69 63.8
Gohir.D01G054600 Gossypium hirsutum HOM05D003865 ORTHO05D004466 4.9e-18 94.0 69 63.8
Gorai.002G074500 Gossypium raimondii HOM05D003865 ORTHO05D004466 4.9e-18 94.0 69 63.8
Zm00001eb324400 Zea mays HOM05D003865 ORTHO05D004466 6.4e-18 93.6 68 61.8
BraA05t22209Z Brassica rapa HOM05D003865 ORTHO05D004466 1.1e-17 92.8 70 58.6
Sp1g39430 Schrenkiella parvula HOM05D003865 ORTHO05D004466 1.1e-17 92.8 61 65.6
Sc03g0009670 Simmondsia chinensis HOM05D003865 ORTHO05D004466 1.1e-17 92.8 67 59.7
Sed0025956 Sechium edule HOM05D003865 ORTHO05D004466 3.2e-17 91.3 67 58.2
Peaxi162Scf00007g02826 Petunia axillaris HOM05D003865 ORTHO05D004466 7.1e-17 90.1 56 73.2
Actinidia12448 Actinidia chinensis HOM05D003865 ORTHO05D004466 3.5e-16 87.8 57 66.7
CsaV3_3G006060 Cucumis sativus L. HOM05D003865 ORTHO05D004466 1.3e-15 85.9 62 56.5
DCAR_009979 Daucus carota HOM05D003865 ORTHO05D004466 1.7e-15 85.5 55 67.3
Manes.13G150400 Manihot esculenta HOM05D003865 ORTHO05D004466 8.7e-15 83.2 48 79.2
C07p00070 Brassica napus HOM05D028728 ORTHO05D033255 2.8e-13 78.2 38 86.8
DCAR_013078 Daucus carota HOM05D003865 ORTHO05D004466 6.9e-12 73.6 50 66.0
GSVIVG01014413001 Vitis vinifera HOM05D003865 ORTHO05D004466 2.0e-11 72.0 43 76.7
Mapoly0067s0090 Marchantia polymorpha HOM05D003865 ORTHO05D004466 1.7e-10 68.9 64 43.8
Oeu058398.1 Olea europaea HOM05D003865 ORTHO05D004466 1.7e-10 68.9 41 75.6
FAN21G1589 Fragaria x ananassa HOM05D003865 ORTHO05D004466 4.2e-09 64.3 46 67.4
Gohir.D05G360466 Gossypium hirsutum HOM05D003865 ORTHO05D004466 4.2e-09 64.3 41 70.7
Hma1.2p1_1961F.1_g309120 Hydrangea macrophylla HOM05D002778 ORTHO05D003112 4.3e-06 54.3 55 41.8
Hma1.2p1_2332F.1_g320100 Hydrangea macrophylla HOM05D002778 ORTHO05D003112 4.3e-06 54.3 55 41.8


User provided reference genes

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